HHsearch alignment for GI: 254780777 and conserved domain: cd04236
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.45 E-value=6e-12 Score=93.27 Aligned_cols=209 Identities=11% Similarity=0.014 Sum_probs=125.5
Q ss_pred CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 82499999400368538877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST 84 (242)
Q Consensus 5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (242)
T Consensus 34 ~~~faVIKvGGaVl~d-------~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i------~~~~~---~~~~~~~-~~v~ 96 (271)
T cd04236 34 WPAFAVLEVDHSVFRS-------LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPD------GTNMS---DLELQAA-RSRL 96 (271)
T ss_pred CCCEEEEEECHHHEEC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCHHC------CCCCC---CHHHHHH-HHHH
T ss_conf 7876999988131505-------8899999999999998899489993897011------55746---0122567-6663
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-H-----------HHHHHHHCCHHHHCCCCCCCCCC-----CCCCCCCHH
Q ss_conf 999999999997618864113400100245-6-----------65432100001100111112465-----567776215
Q gi|254780777|r 85 VINALALDLALRKINVPTVILSSIFMPQVC-E-----------VFSCRNAVSYLSQGKVVIFSGGT-----GNAFLTTDS 147 (242)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~ 147 (242)
T Consensus 97 ~~~n~~lV~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIaplG~~~~Gq~~NINADt 176 (271)
T cd04236 97 VKDCKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSE 176 (271)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECCCEECCCCCEEEECHHH
T ss_conf 79999999999976996245416873377225301376687138607999999978997188252378999888775899
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----C----CCCCCCHHHHHHHH---HCCCCEE
Q ss_conf 78888864164466514754351234322344444444115999985----5----99814099999999---7499699
Q gi|254780777|r 148 AAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----K----GLKVMDCASVVLAR---DCSIPII 216 (242)
Q Consensus 148 ~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----~----G~~v~~~~A~~~a~---~~gI~v~ 216 (242)
T Consensus 177 aA~aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~~l~~~~~i~~~~~~~i~~i~~~l~~l~~~~s~v 250 (271)
T cd04236 177 VTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAV 250 (271)
T ss_pred HHHHHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 999999864876799980787407789------98822016188999987076512352674778999997177873699
Q ss_pred EEECCCCC-HHHHHHCCCCCCCEE
Q ss_conf 95189854-799997799878246
Q gi|254780777|r 217 VFSIHSPG-GIWGGLSGIGRSTII 239 (242)
Q Consensus 217 I~ng~~~~-~i~~~l~Ge~~GT~I 239 (242)
T Consensus 251 i~~---phsll~ELFTd~G~GTLf 271 (271)
T cd04236 251 ITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred EEC---HHHHHHHHHCCCCCCCCC
T ss_conf 837---568789986389877788