HHsearch alignment for GI: 254780777 and conserved domain: cd04237
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.75 E-value=5.5e-17 Score=124.33 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHH
Q ss_conf 8824999994003685388777089999999999999997699099982365410233-44203------7777540246
Q gi|254780777|r 4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTV 76 (242)
Q Consensus 4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~ 76 (242)
T Consensus 16 f~~kt~VIK~GG~~~~~~--------~l~~~~~di~lL~~~Gi~~VlVHGGG~~I~~~l~~~gi~~~fv~G~RVTd~~tl 87 (280)
T cd04237 16 HRGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAAL 87 (280)
T ss_pred HCCCEEEEEECCHHHCCH--------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCHHHH
T ss_conf 689989999896330774--------499999999999988996999928986779999986997462178777999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCCC---CCC-----CCCHH------HH----HHHHHHHHHHCCHHHHCCCCCC
Q ss_conf 788888989999999999976----18864---113-----40010------02----4566543210000110011111
Q gi|254780777|r 77 DSMGMLSTVINALALDLALRK----INVPT---VIL-----SSIFM------PQ----VCEVFSCRNAVSYLSQGKVVIF 134 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~-----~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~ 134 (242)
T Consensus 88 ~vv~~~~G~vn~~i-~a~ls~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~vG~v~~Vn~~~l~~ll~~~~iPVI 166 (280)
T cd04237 88 ECVKEAAGAVRLEI-EALLSMGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEE
T ss_conf 99999999999999-99997053435653557234058658988865314744467983026649999868758965896
Q ss_pred CCC-----CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---C-----CCCCCC
Q ss_conf 246-----556777621578888864164466514754351234322344444444115999985---5-----998140
Q gi|254780777|r 135 SGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---K-----GLKVMD 201 (242)
Q Consensus 135 ~~~-----~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~-----G~~v~~ 201 (242)
T Consensus 167 spig~~~~G~~~NvNAD~~A~~iA~aL~A~kLi~ltdv~Gvl~~------~~~~i~~l~~~e~~~ll~~~~~i~~GMipK 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred ECCEECCCCCEEEECHHHHHHHHHHHHHHCEEEEECCCCCEECC------CCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 04318899988700899999999999744709987188832789------998865049999999998479888778999
Q ss_pred HHHHHHHHHCCCC-EEEEECCCCCHHH-HHHCCCCCCCEE
Q ss_conf 9999999974996-9995189854799-997799878246
Q gi|254780777|r 202 CASVVLARDCSIP-IIVFSIHSPGGIW-GGLSGIGRSTII 239 (242)
Q Consensus 202 ~~A~~~a~~~gI~-v~I~ng~~~~~i~-~~l~Ge~~GT~I 239 (242)
T Consensus 241 l~~a~~Al~~GV~~vhIidg~~~~aLL~ElfT~~G~GT~I 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9999999983999899905999971467760699986709