HHsearch alignment for GI: 254780777 and conserved domain: cd04238

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.89  E-value=2.3e-22  Score=157.58  Aligned_cols=217  Identities=18%  Similarity=0.146  Sum_probs=139.1

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHCCCCC------CCCHHHHHHHHH
Q ss_conf             999940036853887770899999999999999976990999823654102334-4203777------754024678888
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ-VVAENYL------LCERSTVDSMGM   81 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~-~~~~~~~------~~~~~~~~~~~~   81 (242)
T Consensus         1 IVIKlGG~~l~d~-------~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvTd~~~l~-~~~   72 (256)
T cd04238           1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETME-IVE   72 (256)
T ss_pred             CEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHH-HHH
T ss_conf             9899786894598-------79999999999999889929999188299999999869983502673146187899-999


Q ss_pred             HHH-HHHHHHHHHHHHHHCCCCCCCCCCH--------H-----HH----HHHHHHHHHHCCHHHHCCCCCCCCC-----C
Q ss_conf             898-9999999999976188641134001--------0-----02----4566543210000110011111246-----5
Q gi|254780777|r   82 LST-VINALALDLALRKINVPTVILSSIF--------M-----PQ----VCEVFSCRNAVSYLSQGKVVIFSGG-----T  138 (242)
Q Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~  138 (242)
T Consensus        73 ~~l~g~in~~l~~~l~~~g~~aiglsg~d~~~i~a~~~~~~~~d~g~vG~v~~v~~~~i~~lL~~g~IPVi~pi~~~~~G  152 (256)
T cd04238          73 MVLAGKVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG  152 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECEEECCCC
T ss_conf             99853389999999997799721214655877999975564434342455443558999999847994476041356888


Q ss_pred             CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHC
Q ss_conf             56777621578888864164466514754351234322344444444115999985-------59981409999999974
Q gi|254780777|r  139 GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDC  211 (242)
Q Consensus       139 ~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~  211 (242)
T Consensus       153 ~~~ninaD~~Aa~lA~~l~AdkLi~ltdv~Gv~~~~------g~~i~~lt~~e~~~l~~~~~~~gGM~~Kl~aa~~a~~~  226 (256)
T cd04238         153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDP------GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG  226 (256)
T ss_pred             CEEEECHHHHHHHHHHHHCCCCEEEECCCCCEECCC------CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf             689637999999999972801089852888615688------75234127999999997696689539999999999984


Q ss_pred             CC-CEEEEECCCCCHHHHHHC-CCCCCCEE
Q ss_conf             99-699951898547999977-99878246
Q gi|254780777|r  212 SI-PIIVFSIHSPGGIWGGLS-GIGRSTII  239 (242)
Q Consensus       212 gI-~v~I~ng~~~~~i~~~l~-Ge~~GT~I  239 (242)
T Consensus       227 Gv~rv~Ii~g~~~~~Ll~eLft~~G~GT~I  256 (256)
T cd04238         227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI  256 (256)
T ss_pred             CCCEEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf             999799937999877999973799985879