HHsearch alignment for GI: 254780777 and conserved domain: cd04240

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.90  E-value=1.4e-22  Score=158.79  Aligned_cols=199  Identities=21%  Similarity=0.233  Sum_probs=136.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99940036853887770899999999999999976990999823654102334420377775402467888889899999
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL   89 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (242)
T Consensus         1 VvKiGGSL~~~----------~~~ll~~l~~~--~~~~v~IVpGGG~fAd~vR~~~~~~~-~~d~~aH~mAi~Am~~~a~   67 (203)
T cd04240           1 VVKIGGSLIRE----------AVRLLRWLKTL--SGGGVVIVPGGGPFADVVRRYQERKG-LSDAAAHWMAILAMEQYGY   67 (203)
T ss_pred             CEEEEEECCCC----------HHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_conf             97982056466----------89999999983--59978999798089999999999829-9878999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             9999997618864113400100245665432100001100111112465567---7762157888886416446651475
Q gi|254780777|r   90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNA---FLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
T Consensus        68 ll~~~~~~~~----~~~~~~---~~~~-~~~~~~~v~lP~~~l~--~~~~lp~sWdvtsDs~a~~~A~~l~a~~li~~~~  137 (203)
T cd04240          68 LLADLEPRLV----ARTLAE---LTDV-LERGKIAILLPYRLLL--DTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTD  137 (203)
T ss_pred             HHHHHCCHHH----CCCHHH---HHHH-HHCCCCEEEECHHHHC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9996013101----046477---9999-7338915871158751--5898887877661899999999759885899856


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC-CCCCEE
Q ss_conf             4351234322344444444115999985599814099999999749969995189854799997799-878246
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGI-GRSTII  239 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge-~~GT~I  239 (242)
T Consensus       138 vdGiy~~~------~kl~~~i~~~~l~--~~~~VD~~~~~~~~~~~i~~~VvnG~~p~~i~~~l~g~~~~GT~I  203 (203)
T cd04240         138 VDGIYEKD------GKLVNEIAAAELL--GETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CCCCCCCC------HHHHHHCCHHHHC--CCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCC
T ss_conf             77551875------0554115898864--887410778999997696399987998799999986898798579