HHsearch alignment for GI: 254780777 and conserved domain: cd04242

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00  E-value=5.6e-45  Score=296.94  Aligned_cols=231  Identities=18%  Similarity=0.267  Sum_probs=180.8

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999400368538877708999999999999999769909998236541023344203777754024678888898999
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN   87 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
T Consensus         1 RiViKiGss~lt~~~~-~~~~~~i~~la~~I~~l~~~G~evvlVsSGAva-~G~~~l~~~~~~~~~~~~qa~AavGQ~~L   78 (251)
T cd04242           1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVA-AGRQRLGLEKRPKTLPEKQALAAVGQSLL   78 (251)
T ss_pred             CEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HCHHHCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             9899967011689999-859999999999999999789979998247566-18765399878640577889998571999


Q ss_pred             HHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHCHH
Q ss_conf             999999997618864113--400100245665432-10000110011111246-----5567776215788888641644
Q gi|254780777|r   88 ALALDLALRKINVPTVIL--SSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGAD  159 (242)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~ad  159 (242)
T Consensus        79 m~~y~~~f~~~g~~~aQiLlt~~d~~~~~~~~n~~~ti~~LL~~g~iPIiNEND~vat~ei~fGDnD~lAa~vA~~i~Ad  158 (251)
T cd04242          79 MALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNAD  158 (251)
T ss_pred             HHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             99999998872985003523565402749999999999999978964675588855212233447747999998651888


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf             665147543512343223444444441159--99985----------599814099999999749969995189854799
Q gi|254780777|r  160 VILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIW  227 (242)
Q Consensus       160 ~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~  227 (242)
T Consensus       159 ~LiilTdVDGvY~~dP~~~~~Ak~i~~v~~~~~~i~~~~~~~~s~~gtGGM~sKl~AA~~a~~~Gi~~~I~~g~~~~~i~  238 (251)
T cd04242         159 LLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLL  238 (251)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf             79996446732368987687666342635798799977077888887387389999999999889969998289977899


Q ss_pred             HHHCCCCCCCEEC
Q ss_conf             9977998782466
Q gi|254780777|r  228 GGLSGIGRSTIIS  240 (242)
Q Consensus       228 ~~l~Ge~~GT~I~  240 (242)
T Consensus       239 ~~l~g~~vGT~f~  251 (251)
T cd04242         239 DILAGEAVGTLFL  251 (251)
T ss_pred             HHHCCCCCCEEEC
T ss_conf             9976999841669