HHsearch alignment for GI: 254780777 and conserved domain: cd04242
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=5.6e-45 Score=296.94 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=180.8
Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999400368538877708999999999999999769909998236541023344203777754024678888898999
Q gi|254780777|r 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN 87 (242)
Q Consensus 8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (242)
T Consensus 1 RiViKiGss~lt~~~~-~~~~~~i~~la~~I~~l~~~G~evvlVsSGAva-~G~~~l~~~~~~~~~~~~qa~AavGQ~~L 78 (251)
T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVA-AGRQRLGLEKRPKTLPEKQALAAVGQSLL 78 (251)
T ss_pred CEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HCHHHCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 9899967011689999-859999999999999999789979998247566-18765399878640577889998571999
Q ss_pred HHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHCHH
Q ss_conf 999999997618864113--400100245665432-10000110011111246-----5567776215788888641644
Q gi|254780777|r 88 ALALDLALRKINVPTVIL--SSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGAD 159 (242)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~ad 159 (242)
T Consensus 79 m~~y~~~f~~~g~~~aQiLlt~~d~~~~~~~~n~~~ti~~LL~~g~iPIiNEND~vat~ei~fGDnD~lAa~vA~~i~Ad 158 (251)
T cd04242 79 MALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNAD 158 (251)
T ss_pred HHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999998872985003523565402749999999999999978964675588855212233447747999998651888
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 665147543512343223444444441159--99985----------599814099999999749969995189854799
Q gi|254780777|r 160 VILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIW 227 (242)
Q Consensus 160 ~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~ 227 (242)
T Consensus 159 ~LiilTdVDGvY~~dP~~~~~Ak~i~~v~~~~~~i~~~~~~~~s~~gtGGM~sKl~AA~~a~~~Gi~~~I~~g~~~~~i~ 238 (251)
T cd04242 159 LLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLL 238 (251)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 79996446732368987687666342635798799977077888887387389999999999889969998289977899
Q ss_pred HHHCCCCCCCEEC
Q ss_conf 9977998782466
Q gi|254780777|r 228 GGLSGIGRSTIIS 240 (242)
Q Consensus 228 ~~l~Ge~~GT~I~ 240 (242)
T Consensus 239 ~~l~g~~vGT~f~ 251 (251)
T cd04242 239 DILAGEAVGTLFL 251 (251)
T ss_pred HHHCCCCCCEEEC
T ss_conf 9976999841669