HHsearch alignment for GI: 254780777 and conserved domain: cd04249

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.81  E-value=1.9e-18  Score=133.35  Aligned_cols=217  Identities=18%  Similarity=0.127  Sum_probs=135.3

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHHHHHH
Q ss_conf             999940036853887770899999999999999976-99099982365410233-44203------77775402467888
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAK-GIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTVDSMG   80 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~-g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~~~~~   80 (242)
T Consensus         1 iVIK~GG~~l~~-------~~~~~~~~~~i~~l~~~~~~~vVlVHGggpqI~~~l~~~gi~~~f~~G~RvTd~~tl~vv~   73 (252)
T cd04249           1 LVIKLGGALLET-------EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT   73 (252)
T ss_pred             CEEEECCHHCCC-------HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH
T ss_conf             989978246178-------8899999999999998189876998799689999999769997237965658999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--------------HHHHHHHHHHCCHHHHCCCCCCCCC----CC-CC
Q ss_conf             88989999999999976188641134001002--------------4566543210000110011111246----55-67
Q gi|254780777|r   81 MLSTVINALALDLALRKINVPTVILSSIFMPQ--------------VCEVFSCRNAVSYLSQGKVVIFSGG----TG-NA  141 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~  141 (242)
T Consensus        74 ~vl~g~vn~~lv~~l~~~g~~a~gl~~~dg~~~~~~~~~~dlG~vG~v~~Vn~~~i~~ll~~g~IPVisplg~~~~G~~~  153 (252)
T cd04249          74 GALAGTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLM  153 (252)
T ss_pred             HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHCCCCCCEECCCEECCCCCEE
T ss_conf             99846159999999973589862044567746873023666786555323557899998628987476353148999879


Q ss_pred             CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHCCC-
Q ss_conf             77621578888864164466514754351234322344444444115999985-------5998140999999997499-
Q gi|254780777|r  142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDCSI-  213 (242)
Q Consensus       142 ~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~gI-  213 (242)
T Consensus       154 NiNaD~~A~~iA~aL~A~-Li~ltdv~Gvld~------~g~li~~l~~~e~~~li~~~~i~gGMipKl~aa~~Al~~gv~  226 (252)
T cd04249         154 NVNADQAATAIAQLLNAD-LVLLSDVSGVLDA------DKQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRR  226 (252)
T ss_pred             ECCHHHHHHHHHHHHCCC-EEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             759999999999971598-9999688613889------998942189999999997595479739999999999981998


Q ss_pred             CEEEEECCCCCHHHHHHCCCCCCCEE
Q ss_conf             69995189854799997799878246
Q gi|254780777|r  214 PIIVFSIHSPGGIWGGLSGIGRSTII  239 (242)
Q Consensus       214 ~v~I~ng~~~~~i~~~l~Ge~~GT~I  239 (242)
T Consensus       227 ~v~I~~g~~~~~L~elft~~GiGT~I  252 (252)
T cd04249         227 GIDIASWQYPEQLTALLAGEPVGTKI  252 (252)
T ss_pred             EEEEECCCCCHHHHHHHCCCCCCCCC
T ss_conf             79994389873899997599987739