HHsearch alignment for GI: 254780777 and conserved domain: cd04259

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00  E-value=8e-34  Score=228.18  Aligned_cols=216  Identities=18%  Similarity=0.133  Sum_probs=157.1

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---------------------
Q ss_conf             999940036853887770899999999999999976990999823654--102334420---------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---------------------   65 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---------------------   65 (242)
T Consensus         2 iV~KFGGTSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~   74 (295)
T cd04259           2 VVLKFGGTSVSS-------RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNL   74 (295)
T ss_pred             EEEEECHHCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             899768010587-------9999999999998874799989997999998368999999875364466999999999999


Q ss_pred             --------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH----
Q ss_conf             --------------------------37777540246788888989999999999976188641134001002456----
Q gi|254780777|r   66 --------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCE----  115 (242)
Q Consensus        66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  115 (242)
T Consensus        75 ~~~l~~~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~~~~  154 (295)
T cd04259          75 AEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGG  154 (295)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCCCCC
T ss_conf             99852147789999999999999876640479888999999998999999999999967998379648992000467675


Q ss_pred             -----------HHH--HHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             -----------654--32100001100111112465---------56777621578888864164466514754351234
Q gi|254780777|r  116 -----------VFS--CRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       116 -----------~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~ta  234 (295)
T cd04259         155 ETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTA  234 (295)
T ss_pred             CCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             31123443565641549899875149859996784345699987772589730589999997499879999777767568


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             3223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
T Consensus       235 DPr~v~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~p---------~~~GT~Is  295 (295)
T cd04259         235 NPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT  295 (295)
T ss_pred             CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             98768888465733899999999679841689999999984991899289999---------99982669