HHsearch alignment for GI: 254780777 and conserved domain: cd04259
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=8e-34 Score=228.18 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=157.1
Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---------------------
Q ss_conf 999940036853887770899999999999999976990999823654--102334420---------------------
Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA--------------------- 65 (242)
Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~--------------------- 65 (242)
T Consensus 2 iV~KFGGTSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~ 74 (295)
T cd04259 2 VVLKFGGTSVSS-------RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNL 74 (295)
T ss_pred EEEEECHHCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 899768010587-------9999999999998874799989997999998368999999875364466999999999999
Q ss_pred --------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH----
Q ss_conf --------------------------37777540246788888989999999999976188641134001002456----
Q gi|254780777|r 66 --------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCE---- 115 (242)
Q Consensus 66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 115 (242)
T Consensus 75 ~~~l~~~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~~~~ 154 (295)
T cd04259 75 AEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGG 154 (295)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCCCCC
T ss_conf 99852147789999999999999876640479888999999998999999999999967998379648992000467675
Q ss_pred -----------HHH--HHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf -----------654--32100001100111112465---------56777621578888864164466514754351234
Q gi|254780777|r 116 -----------VFS--CRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA 173 (242)
Q Consensus 116 -----------~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~ 173 (242)
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~ta 234 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTA 234 (295)
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 31123443565641549899875149859996784345699987772589730589999997499879999777767568
Q ss_pred CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf 3223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r 174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242)
Q Consensus 174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242)
T Consensus 235 DPr~v~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~p---------~~~GT~Is 295 (295)
T cd04259 235 NPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT 295 (295)
T ss_pred CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf 98768888465733899999999679841689999999984991899289999---------99982669