Query         gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs    109 out of 4303
Neff          9.2 
Searched_HMMs 39220
Date          Sun May 29 19:38:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780777.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00358 pyrH uridylate kinase 100.0       0       0  343.5  18.2  231    7-240     1-231 (231)
  2 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0       0       0  341.2  18.4  231    7-240     1-231 (231)
  3 cd04239 AAK_UMPK-like AAK_UMPK 100.0       0       0  336.3  18.9  229    8-240     1-229 (229)
  4 TIGR02075 pyrH_bact uridylate  100.0       0       0  337.0  15.5  232    6-240     1-236 (236)
  5 TIGR01027 proB glutamate 5-kin 100.0       0       0  332.9  16.4  235    7-242     1-264 (379)
  6 COG0528 PyrH Uridylate kinase  100.0       0       0  310.2  19.8  236    3-241     2-238 (238)
  7 PRK12314 gamma-glutamyl kinase 100.0       0       0  309.8  18.5  235    6-242     9-264 (265)
  8 PRK12443 uridylate kinase; Rev 100.0       0       0  306.1  19.3  235    5-242     3-239 (247)
  9 PRK05429 gamma-glutamyl kinase 100.0       0       0  306.4  18.4  235    5-241     7-261 (372)
 10 PRK13402 gamma-glutamyl kinase 100.0       0       0  304.8  18.0  235    4-242     3-255 (363)
 11 COG0263 ProB Glutamate 5-kinas 100.0 4.2E-45       0  298.0  18.1  236    5-242     5-260 (369)
 12 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 5.6E-45       0  296.9  18.3  231    8-240     1-251 (251)
 13 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 7.1E-44       0  290.2  17.6  234    6-240     8-284 (284)
 14 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 4.6E-42       0  279.0  17.2  212    8-240     1-221 (221)
 15 TIGR00657 asp_kinases aspartat 100.0 2.8E-42       0  280.3  14.0  221    6-242     1-312 (504)
 16 TIGR02076 pyrH_arch uridylate  100.0 9.2E-40 2.4E-44  264.8  16.2  215    9-240     1-232 (232)
 17 PRK07431 aspartate kinase; Pro 100.0   4E-39   1E-43  260.9  15.6  219    6-241     1-244 (594)
 18 cd04246 AAK_AK-DapG-like AAK_A 100.0 2.6E-38 6.7E-43  255.8  17.0  215    9-240     2-239 (239)
 19 COG0527 LysC Aspartokinases [A 100.0 1.3E-38 3.3E-43  257.8  14.9  221    6-242     1-290 (447)
 20 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 5.9E-38 1.5E-42  253.7  17.7  215    9-240     2-239 (239)
 21 PRK08841 aspartate kinase; Val 100.0 1.4E-37 3.6E-42  251.3  16.4  220    6-242     1-243 (392)
 22 PRK06635 aspartate kinase; Rev 100.0 2.2E-37 5.6E-42  250.1  16.3  220    6-242     1-243 (402)
 23 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 3.7E-37 9.3E-42  248.8  15.0  215    9-240     2-244 (244)
 24 PRK08210 aspartate kinase I; R 100.0 1.1E-36 2.7E-41  245.9  16.2  219    6-241     1-247 (405)
 25 cd04241 AAK_FomA-like AAK_FomA 100.0 5.5E-36 1.4E-40  241.5  15.8  226    9-239     2-252 (252)
 26 PRK06291 aspartate kinase; Pro 100.0 9.2E-36 2.3E-40  240.1  16.6  219    8-242     2-304 (466)
 27 KOG1154 consensus              100.0 4.3E-36 1.1E-40  242.2  13.9  239    2-241     4-275 (285)
 28 cd02115 AAK Amino Acid Kinases 100.0 2.5E-35 6.3E-40  237.5  16.9  222   10-239     1-248 (248)
 29 PRK08961 bifunctional aspartat 100.0 1.4E-34 3.6E-39  232.8  14.3  225    2-242     3-305 (865)
 30 cd04244 AAK_AK-LysC-like AAK_A 100.0 4.3E-34 1.1E-38  229.9  16.4  216    8-240     1-298 (298)
 31 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0   8E-34   2E-38  228.2  17.2  216    9-240     2-295 (295)
 32 PRK05925 aspartate kinase; Pro 100.0 4.6E-34 1.2E-38  229.7  15.7  216    6-241     1-280 (440)
 33 cd04234 AAK_AK AAK_AK: Amino A 100.0 6.5E-34 1.7E-38  228.7  16.5  202    9-240     2-227 (227)
 34 PRK09436 thrA bifunctional asp 100.0 7.3E-34 1.9E-38  228.4  15.4  216   10-242     3-298 (817)
 35 PRK09466 metL bifunctional asp 100.0 5.8E-34 1.5E-38  229.1  14.3  220    5-241     9-300 (810)
 36 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 3.5E-33 8.9E-38  224.2  17.0  214   10-240     3-294 (294)
 37 TIGR01092 P5CS delta l-pyrroli 100.0 1.1E-34 2.9E-39  233.4   8.8  237    2-242     2-294 (738)
 38 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 6.1E-33 1.6E-37  222.7  15.8  216    9-242     3-306 (306)
 39 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 1.2E-32   3E-37  221.0  17.1  213    9-240     2-292 (292)
 40 PRK09084 aspartate kinase III; 100.0 8.1E-33 2.1E-37  222.0  16.1  215    9-242     2-290 (447)
 41 PRK08373 aspartate kinase; Val 100.0 7.6E-33 1.9E-37  222.2  15.0  215    7-242     4-278 (359)
 42 cd04243 AAK_AK-HSDH-like AAK_A 100.0 1.9E-32 4.9E-37  219.6  16.6  214    9-240     2-293 (293)
 43 PRK09034 aspartate kinase; Rev 100.0 2.9E-33 7.3E-38  224.8  12.1  213   10-241     3-289 (450)
 44 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1.8E-32 4.7E-37  219.8  15.2  214    6-240     1-288 (288)
 45 COG1608 Predicted archaeal kin 100.0 1.3E-31 3.2E-36  214.6  14.5  231    9-241     3-252 (252)
 46 pfam00696 AA_kinase Amino acid 100.0 9.4E-31 2.4E-35  209.3  14.1  206    7-219     1-230 (230)
 47 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 2.1E-29 5.5E-34  200.9  16.7  221    9-240    33-262 (262)
 48 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 8.8E-28 2.2E-32  190.9  13.7   93  138-240   207-304 (304)
 49 PRK09181 aspartate kinase; Val 100.0 1.9E-27 4.9E-32  188.8  14.5   95  138-242   214-313 (476)
 50 PRK00942 acetylglutamate kinas  99.9 1.2E-22   3E-27  159.4  14.2  219    8-240     1-262 (262)
 51 TIGR02078 AspKin_pair Pyrococc  99.9 3.7E-23 9.4E-28  162.4  11.2  213    9-241     2-277 (341)
 52 cd04240 AAK_UC AAK_UC: Unchara  99.9 1.4E-22 3.7E-27  158.8  14.1  199   10-239     1-203 (203)
 53 cd04238 AAK_NAGK-like AAK_NAGK  99.9 2.3E-22 5.7E-27  157.6  13.6  217    9-239     1-256 (256)
 54 KOG0456 consensus               99.9 4.8E-22 1.2E-26  155.5  12.9  217    8-242    80-376 (559)
 55 cd04250 AAK_NAGK-C AAK_NAGK-C:  99.9 5.7E-21 1.5E-25  148.9  14.7  224    5-239    13-279 (279)
 56 TIGR00656 asp_kin_monofn aspar  99.8 7.3E-20 1.9E-24  142.1  13.1  220    6-241     1-298 (480)
 57 cd04249 AAK_NAGK-NC AAK_NAGK-N  99.8 1.9E-18 4.9E-23  133.4  15.2  217    9-239     1-252 (252)
 58 cd04251 AAK_NAGK-UC AAK_NAGK-U  99.8 4.8E-18 1.2E-22  130.9  13.8  208    9-239     1-257 (257)
 59 CHL00202 argB acetylglutamate   99.8 1.8E-17 4.6E-22  127.3  16.4  226    4-240    21-283 (284)
 60 PRK12353 carbamate kinase; Rev  99.8 6.7E-18 1.7E-22  130.0  14.0  229    6-241     2-312 (312)
 61 COG0548 ArgB Acetylglutamate k  99.8 3.4E-17 8.6E-22  125.7  17.6  224    6-241     2-265 (265)
 62 cd04237 AAK_NAGS-ABP AAK_NAGS-  99.8 5.5E-17 1.4E-21  124.3  14.7  221    4-239    16-280 (280)
 63 COG2054 Uncharacterized archae  99.7 9.1E-17 2.3E-21  123.0  11.8  206   10-241     3-210 (212)
 64 PRK12454 carbamate kinase-like  99.7 3.4E-16 8.6E-21  119.5  14.2  228    7-241     3-313 (313)
 65 PRK12686 carbamate kinase; Rev  99.7 3.2E-16 8.3E-21  119.6  14.0  228    6-240     3-312 (313)
 66 PRK05279 N-acetylglutamate syn  99.7 1.3E-15 3.4E-20  115.8  14.7  221    6-242    25-292 (441)
 67 cd04235 AAK_CK AAK_CK: Carbama  99.7 3.7E-15 9.3E-20  113.1  13.2  226    8-240     1-308 (308)
 68 cd04252 AAK_NAGK-fArgBP AAK_NA  99.6 2.6E-14 6.6E-19  107.9  15.1  214   10-239     2-248 (248)
 69 PRK09411 carbamate kinase; Rev  99.6 2.5E-14 6.4E-19  108.0  13.6  223    6-240     1-296 (297)
 70 TIGR00761 argB acetylglutamate  99.6 1.1E-14 2.9E-19  110.1  11.6  199    9-217     2-253 (254)
 71 PRK12352 putative carbamate ki  99.6 3.8E-14 9.8E-19  106.8  13.8  228    7-241     3-315 (316)
 72 PRK12354 carbamate kinase; Rev  99.6 1.3E-13 3.4E-18  103.5  13.6  228    8-242     2-302 (302)
 73 COG0549 ArcC Carbamate kinase   99.6 2.1E-13 5.3E-18  102.3  13.8  228    7-241     1-312 (312)
 74 TIGR00746 arcC carbamate kinas  99.5 5.4E-13 1.4E-17   99.8  10.7  229    7-241     1-321 (321)
 75 cd04236 AAK_NAGS-Urea AAK_NAGS  99.5   6E-12 1.5E-16   93.3  14.8  209    5-239    34-271 (271)
 76 PRK04531 acetylglutamate kinas  99.2 2.7E-10   7E-15   83.1  12.4  217    5-240    19-271 (421)
 77 TIGR01890 N-Ac-Glu-synth amino  98.9 2.7E-07 6.8E-12   64.6  14.8  221    7-241    18-288 (439)
 78 TIGR01689 EcbF-BcbF capsule bi  91.6     0.4   1E-05   26.5   4.9   48    6-54      1-49  (126)
 79 TIGR00705 SppA_67K signal pept  86.9     1.4 3.6E-05   23.1   4.8   38   15-52    100-139 (614)
 80 PRK09484 3-deoxy-D-manno-octul  85.3    0.93 2.4E-05   24.3   3.2   18   38-55     60-77  (186)
 81 PRK00192 mannosyl-3-phosphogly  83.8     2.6 6.7E-05   21.5   5.0   47    1-54      1-47  (275)
 82 PRK10530 phosphotransferase; P  80.9     3.4 8.8E-05   20.8   4.6   46    4-55      1-46  (272)
 83 KOG2436 consensus               73.4     6.9 0.00018   18.9   7.7  162    7-177    96-289 (520)
 84 PRK10513 sugar phosphatase; Pr  71.3     7.7  0.0002   18.6   5.2   46    4-55      1-46  (270)
 85 TIGR01524 ATPase-IIIB_Mg magne  68.4     8.9 0.00023   18.2   6.3  122   11-174   473-597 (892)
 86 COG1778 Low specificity phosph  65.7       4  0.0001   20.4   1.9   21   37-57     43-63  (170)
 87 TIGR00338 serB phosphoserine p  64.7     8.5 0.00022   18.3   3.4   26   34-59     91-116 (223)
 88 pfam03686 UPF0146 Uncharacteri  55.6      11 0.00029   17.6   2.7   72  139-220    19-103 (127)
 89 PRK01158 phosphoglycolate phos  55.0      16  0.0004   16.7   5.0   45    4-54      1-45  (226)
 90 PRK10964 ADP-heptose:LPS hepto  54.6      16  0.0004   16.7   6.0   20   34-53     75-94  (322)
 91 KOG1780 consensus               50.6     7.7  0.0002   18.6   1.2   38    7-47     15-54  (77)
 92 TIGR02482 PFKA_ATP 6-phosphofr  50.6      18 0.00047   16.3   4.7   44   10-55     58-101 (302)
 93 COG5663 Uncharacterized conser  50.3     7.4 0.00019   18.7   1.1   37  201-237   143-185 (194)
 94 PRK08305 spoVFB dipicolinate s  50.2      19 0.00047   16.3   4.0   43    3-56      2-44  (195)
 95 TIGR01670 YrbI-phosphatas 3-de  49.7      13 0.00033   17.3   2.3   23  203-225    35-57  (154)
 96 TIGR01302 IMP_dehydrog inosine  49.4      19 0.00049   16.2   3.3   33  199-232   325-364 (476)
 97 COG0560 SerB Phosphoserine pho  48.9      19 0.00049   16.1   4.3   31  143-173   101-133 (212)
 98 pfam05141 DIT1_PvcA Pyoverdine  45.7      22 0.00055   15.9   2.9   45   12-58     28-72  (274)
 99 TIGR01077 L13_A_E ribosomal pr  44.4      23 0.00058   15.7   3.2   24   30-53      9-32  (144)
100 TIGR01466 cobJ_cbiH precorrin-  42.9      18 0.00046   16.3   2.1   24   31-55     57-80  (254)
101 PRK10949 protease 4; Provision  42.0      25 0.00063   15.5   4.0   41    5-52    112-152 (618)
102 TIGR01490 HAD-SF-IB-hyp1 HAD-s  41.0      26 0.00066   15.4   3.4   18   38-55     98-115 (204)
103 TIGR01662 HAD-SF-IIIA hydrolas  40.7      25 0.00063   15.5   2.6   33   31-63     30-65  (171)
104 TIGR00099 Cof-subfamily Cof-li  37.2      29 0.00075   15.0   3.9   41    9-55      2-43  (270)
105 TIGR01978 sufC FeS assembly AT  36.9      30 0.00076   15.0   4.8   31   17-57     30-60  (248)
106 COG4598 HisP ABC-type histidin  36.6      30 0.00077   15.0   5.0   26  196-221   203-229 (256)
107 PRK06278 cobyrinic acid a,c-di  34.5      33 0.00083   14.8   3.1   27  202-228   346-372 (482)
108 COG1915 Uncharacterized conser  34.5      33 0.00083   14.8   4.8   43   10-55    168-210 (415)
109 TIGR00213 GmhB_yaeD D,D-heptos  32.6      35 0.00089   14.6   3.6   82   27-120    24-107 (178)
110 PRK11544 hycI hydrogenase 3 ma  32.3      35  0.0009   14.5   2.4   20    6-26      1-20  (156)
111 cd02877 GH18_hevamine_XipI_cla  31.9      36 0.00092   14.5   3.5   26   31-56     58-83  (280)
112 TIGR00300 TIGR00300 conserved   31.7      36 0.00092   14.5   4.1   43   10-55    175-222 (418)
113 CHL00189 infB translation init  31.5      37 0.00093   14.4   5.5  100  131-230   272-399 (770)
114 TIGR02440 FadJ fatty oxidation  30.6      38 0.00096   14.4   2.3   32   22-53     22-55  (732)
115 cd03802 GT1_AviGT4_like This f  30.4      38 0.00097   14.3   4.7   26   31-56     21-47  (335)
116 TIGR02177 PorB_KorB 2-oxoacid:  30.1      38 0.00098   14.3   3.1   30   27-56      9-38  (302)
117 COG0680 HyaD Ni,Fe-hydrogenase  28.9      40   0.001   14.2   5.2   47    5-58      1-47  (160)
118 pfam05116 S6PP Sucrose-6F-phos  28.0      42  0.0011   14.1   4.6   45    5-55      1-45  (247)
119 pfam10686 DUF2493 Protein of u  27.9      42  0.0011   14.1   2.8   16   40-55     26-41  (71)
120 TIGR01313 therm_gnt_kin carboh  27.4      43  0.0011   14.0   3.6   37   15-55     49-87  (175)
121 cd03522 MoeA_like MoeA_like. T  27.1      43  0.0011   14.0   3.1   17   35-51     29-45  (312)
122 TIGR01488 HAD-SF-IB HAD-superf  26.9      44  0.0011   14.0   3.0   17  144-160   113-129 (204)
123 PRK10976 putative sugar phosph  26.7      44  0.0011   13.9   5.0   44    6-55      2-45  (266)
124 PRK10886 DnaA initiator-associ  26.1      45  0.0012   13.9   3.5   30  202-231   126-155 (196)
125 PRK08674 bifunctional phosphog  25.9      46  0.0012   13.8   3.6   22   38-59     98-119 (328)
126 cd02871 GH18_chitinase_D-like   25.4      47  0.0012   13.8   3.7   26   31-56     59-84  (312)
127 COG1126 GlnQ ABC-type polar am  24.9      48  0.0012   13.7   5.0   18  145-162   142-159 (240)
128 PRK07313 phosphopantothenoylcy  24.7      48  0.0012   13.7   3.5   37    7-55      3-39  (180)
129 KOG2599 consensus               24.4      49  0.0012   13.7   5.4  134   23-156    88-237 (308)
130 PRK05920 aromatic acid decarbo  24.4      49  0.0012   13.7   4.2   40    5-56      3-42  (205)
131 pfam08645 PNK3P Polynucleotide  24.2      49  0.0013   13.7   3.0   45    9-53      3-53  (158)
132 TIGR01487 SPP-like SPP-like hy  24.0      50  0.0013   13.6   3.1   34   17-54     11-45  (223)
133 COG0396 sufC Cysteine desulfur  23.6      50  0.0013   13.6   5.0   30   17-56     34-63  (251)
134 PRK13982 bifunctional SbtC-lik  23.4      51  0.0013   13.6   8.0   41    3-55     68-108 (476)
135 pfam00162 PGK Phosphoglycerate  23.2      51  0.0013   13.5   5.7   51    4-55      7-57  (383)
136 COG1979 Uncharacterized oxidor  23.1      52  0.0013   13.5   5.6   58    3-60     25-100 (384)
137 PRK09982 universal stress prot  22.9      52  0.0013   13.5   2.4   48    4-62      1-48  (142)
138 TIGR01494 ATPase_P-type ATPase  22.8      52  0.0013   13.5   3.9   24  202-225   332-355 (478)
139 pfam06581 DUF1135 Protein of u  22.6      35 0.00091   14.5   0.9   21  144-164   148-168 (239)
140 COG0616 SppA Periplasmic serin  22.6      53  0.0013   13.5   2.4   14    8-21     61-74  (317)
141 PRK13936 phosphoheptose isomer  22.4      53  0.0014   13.4   3.5   30  202-231   128-157 (197)
142 PRK09552 mtnX 2-hydroxy-3-keto  21.5      56  0.0014   13.3   3.3   20  204-223   187-206 (219)
143 COG0561 Cof Predicted hydrolas  21.4      56  0.0014   13.3   5.2   45    5-55      2-46  (264)
144 PRK13962 bifunctional phosphog  21.2      56  0.0014   13.3   6.0   51    5-55     12-62  (653)
145 PRK13938 phosphoheptose isomer  21.2      57  0.0014   13.3   3.4   29   28-56     28-56  (196)
146 cd03239 ABC_SMC_head The struc  21.1      57  0.0014   13.3   5.0   19   15-34     24-42  (178)
147 TIGR00075 hypD hydrogenase exp  21.0      57  0.0015   13.3   3.1   31  198-229   211-242 (384)
148 PRK11133 serB phosphoserine ph  20.4      59  0.0015   13.2   4.9   31  143-173   205-237 (322)

No 1  
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00  E-value=0  Score=343.46  Aligned_cols=231  Identities=53%  Similarity=0.830  Sum_probs=202.4

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             49999940036853887770899999999999999976990999823654102334420377775402467888889899
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
                      ||||||||||+|++++++++|.++|+++|++|++++++|+||++|+|||..+++........   .....++++.+++..
T Consensus         1 kRIViKiG~s~L~~~~~~~l~~~~i~~la~~I~~l~~~G~evvlVsSGg~~a~~~~~~~~~~---~~~~~d~~g~~at~~   77 (231)
T PRK00358          1 KRVLLKLSGEALAGDEGFGIDPDVLDRIAQEIKELVELGVEVAVVIGGGNIFRGAAAAKAGM---DRVTADYMGMLATVM   77 (231)
T ss_pred             CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCHHHHHCCC---CCCHHHHHHHHHHHH
T ss_conf             95999965565038999983999999999999999977996999983873315264774588---654699999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             99999999976188641134001002456654321000011001111124655677762157888886416446651475
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
                      +.++++..+...+.+....+.............+.....++.+.++++.+..+.++++||++|+++|.+++||+|+++||
T Consensus        78 n~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~Iv~~~~~~~~~~nD~laa~vA~~i~AD~liilTD  157 (231)
T PRK00358         78 NALALQDALERAGVNTRVQSAIPMNQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATK  157 (231)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             99999999973697326751223443234010899998753680799966756878771089999998659988988622


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             43512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      |||+||+||+++|+|++|++++++|+++.|+++||++|+++|+++|||++|+||++|++|.++++||.+||+|+
T Consensus       158 VDGlYt~dP~~~~dAk~I~~Is~~e~~~~g~~~~~~~Aa~~a~~~Gi~~~I~ng~~~~~i~~il~Ge~vGTlI~  231 (231)
T PRK00358        158 VDGVYDADPKKDPDAKKYDTLTYDEVLDKGLKVMDPTAISLARDNKIPIIVFNGNKPGNLKRVVKGENIGTLVS  231 (231)
T ss_pred             CCCEECCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC
T ss_conf             37416679766998668254579999867754278999999998799899987999348999977999874749


No 2  
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00  E-value=0  Score=341.19  Aligned_cols=231  Identities=55%  Similarity=0.871  Sum_probs=207.5

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             49999940036853887770899999999999999976990999823654102334420377775402467888889899
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
                      ||||||||||+|++++++++|.++|+++|++|++++++|+||+||+|||+.++++......   ......++++++++.+
T Consensus         1 kRIViKiGGs~L~~~~~~~ld~~~I~~la~~I~~l~~~G~eVviVvggG~i~rg~~~~~~~---~~~~~~d~~g~lat~~   77 (231)
T cd04254           1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAG---MDRATADYMGMLATVI   77 (231)
T ss_pred             CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHCC---CCCCHHHHHHHHHHHH
T ss_conf             9599995166607899988599999999999999997798699998177301242245346---6635188999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             99999999976188641134001002456654321000011001111124655677762157888886416446651475
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
                      +..+++..+...+.++.+.+..+.....+.+..+.....++.+.++++.+..+.++++||++|+++|.+++||.|+++||
T Consensus        78 n~~ll~~al~~~g~~~~~~t~~~~~~~~~~~~~~~~~~~L~~g~VvI~~g~~g~~~~ttD~~aa~~A~~~~ad~~~~~td  157 (231)
T cd04254          78 NALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATK  157 (231)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             99999999986799879974223442223112899999973598899966757876551179999998729988999763


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             43512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      |||+||+||+++|+|+++++++|+|++++|.++||++|+++|+++|||++|+||++|++|.++++||.+||+||
T Consensus       158 vdgvy~~dP~~~~~a~~~~~is~~e~~~~~~~v~d~~A~~~a~~~~i~~~v~~~~~~~~I~k~l~Ge~~GTlI~  231 (231)
T cd04254         158 VDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             ECCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC
T ss_conf             16622689655755554030569999847766243999999998699889973999526999977998864759


No 3  
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00  E-value=0  Score=336.32  Aligned_cols=229  Identities=50%  Similarity=0.782  Sum_probs=205.6

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999400368538877708999999999999999769909998236541023344203777754024678888898999
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN   87 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
                      |||||||||+|+++++ +++.++|+++|++|++++++|+||++|+|||..++++........   .....+.+..++..+
T Consensus         1 RIViKiG~s~lt~~~~-~l~~~~i~~la~~i~~l~~~g~evilV~s~G~~a~g~~~~~~~~~---~~~~~~~~~~a~~~~   76 (229)
T cd04239           1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP---RATADYIGMLATVMN   76 (229)
T ss_pred             CEEEEECHHHHCCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCC---CCHHHHHHHHHHHHH
T ss_conf             9899976577018999-919999999999999999779979999899734466434415667---135999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCC
Q ss_conf             99999999761886411340010024566543210000110011111246556777621578888864164466514754
Q gi|254780777|r   88 ALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV  167 (242)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdv  167 (242)
                      ..+++..+..++.+.............+....+.....++.+.+|+..+..+++++|||++|+++|.+++||.|+++|||
T Consensus        77 ~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ipV~~~~~~~~~~dnD~lAa~vA~~v~AD~lIilTDV  156 (229)
T cd04239          77 ALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNV  156 (229)
T ss_pred             HHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99999999867997898317760330102239999999853977998365578876500899999997299889861123


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             3512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r  168 DGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       168 dGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||+||+||+++|+|++|++++++|++++|+|+||++|+++|+++||+++|+||++|++|.++++||.+||+|+
T Consensus       157 DGlY~~dP~~~~~Ak~I~~is~~e~~~~g~~~~k~~Aa~~a~~~Gi~~~I~ng~~~~~i~~~l~G~~vGTlI~  229 (229)
T cd04239         157 DGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE  229 (229)
T ss_pred             CCCCCCCCCCCCCCEECCCCCHHHHHHCCCCEECHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEC
T ss_conf             8617889887998748771289999875987444999999998799699977999338999977999981659


No 4  
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963   Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes.   Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected.   This entry represents the bacterial proteins..
Probab=100.00  E-value=0  Score=337.02  Aligned_cols=232  Identities=57%  Similarity=0.893  Sum_probs=224.8

Q ss_pred             CEEEEEEEEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             249999940036853-8877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r    6 YKRVLLKVSGEALAG-ISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST   84 (242)
Q Consensus         6 ~KrIViKiGGSsL~~-~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (242)
                      ||||+|||.|.+|+. ++++++|..+|+++|+||+++++.|.||.||.|||+..|+....   ....++...+++|++++
T Consensus         1 ~kRvLlKLSGEaL~g~~~~f~ID~~~l~~iA~eik~~~~~G~evgIViGGGNIfRG~~~~---~~Gi~R~~aDymGMLAT   77 (236)
T TIGR02075         1 YKRVLLKLSGEALAGKDSQFGIDPKRLNRIANEIKEVVKKGIEVGIVIGGGNIFRGKSAA---ELGIDRVSADYMGMLAT   77 (236)
T ss_pred             CCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---HCCCCEEECCCCCHHHH
T ss_conf             964899961043247888864268999999999999986794899997782788778898---74896111432305899


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC-CCHHH-HHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH
Q ss_conf             9999999999976188641134-00100-245665432100001100111112465567776215788888641644665
Q gi|254780777|r   85 VINALALDLALRKINVPTVILS-SIFMP-QVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL  162 (242)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~  162 (242)
                      .++..+++..+...++.+.+.+ +.+.. ...+.+..+.....++.+.++++.+.+|.||.++|+.|++.|.+++||.++
T Consensus        78 viNglaL~~~L~~~g~~~~V~Sfai~~~~~i~E~Y~~~~a~~~le~g~vVIF~gGtGnPfFTTDtaA~LRAiEi~aD~~L  157 (236)
T TIGR02075        78 VINGLALKDALEKLGLKTRVLSFAISMPKQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVIL  157 (236)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf             99999999888736995689877753586413232278999985359789995589869632115888766643134799


Q ss_pred             HCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             1475-43512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r  163 KGTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       163 i~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ..|+ ||||||+||+++|+|++++.|||+|+|..+.+|||.+|.-+|++|++|++|||-++|++|.+++.||.+||+|+
T Consensus       158 kgt~GVDGVY~~DPkknk~A~~y~~itY~~~L~~~L~VMD~TA~~La~dnnlpi~VFnI~~~g~l~~vi~g~~~gTlv~  236 (236)
T TIGR02075       158 KGTNGVDGVYTADPKKNKDAKKYDTITYNEVLKKNLKVMDLTAFSLAKDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  236 (236)
T ss_pred             EECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCEEEEC
T ss_conf             8104888023587885987523166798999861471135899999987789759966665301645322784457528


No 5  
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715    L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis  ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate.    Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=332.93  Aligned_cols=235  Identities=23%  Similarity=0.299  Sum_probs=207.3

Q ss_pred             EEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             499999400368538877-7089999999999999997699099982365410233442037777540246788888989
Q gi|254780777|r    7 KRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTV   85 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (242)
                      ||||+|||+|+||++++. .++..+|..|+++|++++++||||||||||+ .+.+....+....+.+....+++...++.
T Consensus         1 ~riVvK~GsS~Lt~~~g~h~l~~~~i~~lv~~v~~L~~~Gh~vviVSSGA-~AaG~~~LG~~~rP~~la~KQAlAAVGQ~   79 (379)
T TIGR01027         1 KRIVVKVGSSSLTGSSGSHELDRSRIAELVEQVAALHAAGHEVVIVSSGA-VAAGFEALGLPERPKTLAEKQALAAVGQV   79 (379)
T ss_pred             CEEEEEEECCEEECCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHCCCCCCCCCHHHHHHHHHCCHH
T ss_conf             96899970321117888741377999999999999986599899981675-88623445569998625678878731456


Q ss_pred             HHHHHHHHHHHHHCCCC--CCCCCCHHHHHH--HHHHHHHH-CCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHH
Q ss_conf             99999999997618864--113400100245--66543210-0001100111112465-----56777621578888864
Q gi|254780777|r   86 INALALDLALRKINVPT--VILSSIFMPQVC--EVFSCRNA-VSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASE  155 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~  155 (242)
                      .++..|...|..||.+.  .+++..++..+.  ++.|-+.+ ..+++.+.+|++++++     |+.|||||++||++|.+
T Consensus        80 ~Lm~~y~~~F~~Yg~~~aQiLLTr~D~~~R~eeRy~NAr~TL~~Ll~~gvvPIiNENDTVaveEi~fGDND~LSAlvA~L  159 (379)
T TIGR01027        80 RLMQLYENLFSSYGLKVAQILLTRADFSKREEERYLNARNTLEALLELGVVPIINENDTVAVEEIKFGDNDTLSALVAIL  159 (379)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf             89999999997548822243405798863378999999999999986594789867742244000546781699999999


Q ss_pred             HCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--------------HHCCCCCCCHHHHHHHHHCCCCEEEEECC
Q ss_conf             1644665147543512343223444444441159999--------------85599814099999999749969995189
Q gi|254780777|r  156 IGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF--------------IEKGLKVMDCASVVLARDCSIPIIVFSIH  221 (242)
Q Consensus       156 ~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~--------------l~~G~~v~~~~A~~~a~~~gI~v~I~ng~  221 (242)
                      ++||.|+++|||||+||+|||+||+|++|+++...+.              .+.|+|-+|+.||++|.++|||++|+.|.
T Consensus       160 v~AD~L~LLTD~dGLYd~dPR~nPdA~~I~~V~~~~~~~~~~aG~S~g~~~~GTGGM~sK~~AA~~A~~~Gv~v~i~~g~  239 (379)
T TIGR01027       160 VGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSSGSSKVGTGGMRSKIEAARLATRAGVPVIIASGS  239 (379)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             97528977617553306874537851453412453323411114667788756646789999999998689958994488


Q ss_pred             CCCHHHHHHC----CCCCCCEECCC
Q ss_conf             8547999977----99878246689
Q gi|254780777|r  222 SPGGIWGGLS----GIGRSTIISGE  242 (242)
Q Consensus       222 ~~~~i~~~l~----Ge~~GT~I~~~  242 (242)
                      +|++|.+++.    |+.+||+|.++
T Consensus       240 ~P~~i~~~~~hhfyg~~~GT~F~a~  264 (379)
T TIGR01027       240 KPEKIADALEHHFYGAPVGTVFEAQ  264 (379)
T ss_pred             CHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf             9789999999740377877443357


No 6  
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=310.22  Aligned_cols=236  Identities=52%  Similarity=0.788  Sum_probs=226.9

Q ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             88824999994003685388777089999999999999997699099982365410233442037777540246788888
Q gi|254780777|r    3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGML   82 (242)
Q Consensus         3 ~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (242)
                      +.+|||||+||||+.|..++++++|.+++.++|++|+++.+.|.||.||+|||..+|++.....   ..+...+++++++
T Consensus         2 ~~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~---g~~r~~~D~mGml   78 (238)
T COG0528           2 KPKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAA---GMDRVTADYMGML   78 (238)
T ss_pred             CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_conf             8633799999421036478888879899999999999998669689999789789976789876---9851224688899


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH
Q ss_conf             98999999999997618864113400100245665432100001100111112465567776215788888641644665
Q gi|254780777|r   83 STVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL  162 (242)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~  162 (242)
                      +++++..+++.++...++++.+.+........+....+.....++.+.++++.+.++.|+.++|+.|+++|.+++||.++
T Consensus        79 aTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll  158 (238)
T COG0528          79 ATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLL  158 (238)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             99999999999986358761221311176666866799999999749989991888999873479999999983886899


Q ss_pred             HCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             1475-435123432234444444411599998559981409999999974996999518985479999779987824668
Q gi|254780777|r  163 KGTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       163 i~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      ..|+ ||||||+||+++|+|++++++||+|+++.+..+||++|+.+|++++||+++||.++|++|.+++.||.+||+|++
T Consensus       159 ~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~GT~V~~  238 (238)
T COG0528         159 KATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP  238 (238)
T ss_pred             EECCCCCCEECCCCCCCCCCEECCCCCHHHHHHHCCEEECHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEECC
T ss_conf             84067780368999889882232237999999724624059999999975994899937887659999748967417069


No 7  
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00  E-value=0  Score=309.83  Aligned_cols=235  Identities=16%  Similarity=0.210  Sum_probs=187.1

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             24999994003685388777089999999999999997699099982365410233442037777540246788888989
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTV   85 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (242)
                      -||||||+|||+|+++++ +++.++++++|++|++++++|++++||+||+.. .+.........+.+..+.+++...++.
T Consensus         9 ~krIViKiG~s~lt~~~g-~~~~~~i~~la~~I~~l~~~G~~vvlVsSGav~-~G~~~l~~~~~~~~~~~~qa~aavGq~   86 (265)
T PRK12314          9 AKRIVIKVGSSSLSYENG-KINLERIEQLVFVISDLMNKGKEVILVSSGAIG-AGLTKLKLDKRPTNLAEKQALAAVGQP   86 (265)
T ss_pred             CCEEEEEECHHHEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             878999966112678999-859999999999999999789989998637443-150013887787624679999997279


Q ss_pred             HHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHH-HHHHCCHHHHCCCCCCCCCC-----CC-CCCCCHHHHHHHHHHH
Q ss_conf             99999999997618864113--4001002456654-32100001100111112465-----56-7776215788888641
Q gi|254780777|r   86 INALALDLALRKINVPTVIL--SSIFMPQVCEVFS-CRNAVSYLSQGKVVIFSGGT-----GN-AFLTTDSAAALRASEI  156 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~D~~a~~ia~~~  156 (242)
                      .++.+|...|..++.++.+.  +...........+ .+....+++.+.+|++++.+     ++ .|||||++|+++|.++
T Consensus        87 ~Lm~~y~~~f~~~~~~~aQiLlt~~d~~~~~~~~n~~~tl~~ll~~g~IPIvneND~Vat~ei~~fGdnD~lAA~vA~~i  166 (265)
T PRK12314         87 ELMSLYSQFFARYGIVVGQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDKFGDNDRLSAIVAKLV  166 (265)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             99999998865449815888504432127999999999999998489566870788531465445457509999998755


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             644665147543512343223444444441159--99985----------599814099999999749969995189854
Q gi|254780777|r  157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPG  224 (242)
Q Consensus       157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~  224 (242)
                      +||+|+++||||||||+||+.+|+|++|+++++  ++.+.          .|+|.+|+.|+++|.++|||++|+||++|+
T Consensus       167 ~AD~liilTdVDGvY~~dP~~~~dAk~I~~v~~~~~~~~~~~~~~~s~~gtGGM~sKl~Aa~~a~~~Gi~v~I~ng~~~~  246 (265)
T PRK12314        167 KADLLIILSDIDGLYDKNPRIYPDAKLLSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPS  246 (265)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             97669997356742279988799973840245679789975147888877686489999999999789919997089962


Q ss_pred             HHHHHHCCCCCCCEECCC
Q ss_conf             799997799878246689
Q gi|254780777|r  225 GIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       225 ~i~~~l~Ge~~GT~I~~~  242 (242)
                      +|.++++||.+||++.|+
T Consensus       247 ~i~~~l~ge~~GT~f~P~  264 (265)
T PRK12314        247 DILSFLEGESIGTLFAPK  264 (265)
T ss_pred             HHHHHHCCCCCCEEECCC
T ss_conf             899997699871598068


No 8  
>PRK12443 uridylate kinase; Reviewed
Probab=100.00  E-value=0  Score=306.14  Aligned_cols=235  Identities=38%  Similarity=0.616  Sum_probs=221.4

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             82499999400368538877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST   84 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (242)
                      +||||++|++|.+|+.++++++|.++++.+|++|+++.+.|.|+.||.|||+++|++...   ....++..++.++++++
T Consensus         3 ~ykRVllKlSGEaL~g~~~~g~d~~~l~~ia~eI~~~~~~G~evaiVvGGGNi~RG~~~~---~~gidr~~aD~iGMLaT   79 (247)
T PRK12443          3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE---EWGIDRVEADNIGTLGT   79 (247)
T ss_pred             CCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH---HCCCCCCHHHHHHHHHH
T ss_conf             867899997388828999888799999999999999997798799997688502322365---53987310368889999


Q ss_pred             HHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf             9999999999976-188641134001002456654321000011001111124655677762157888886416446651
Q gi|254780777|r   85 VINALALDLALRK-INVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILK  163 (242)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i  163 (242)
                      .++..+++..+.. .+.++.+.+........+.+..+.....++.+.++++.+.++.|+.++|+.|++.|.+++||.++.
T Consensus        80 vmNal~L~~~l~~~~g~~~rv~sai~~~~v~e~y~~~rA~~~LekG~VVIfagGTGnP~fTTDtaAaLrA~Ei~Ad~lL~  159 (247)
T PRK12443         80 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILV  159 (247)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHC
T ss_conf             99999999999975599469973233674567777899999973697899978878875204399999998828613321


Q ss_pred             CCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             475-4351234322344444444115999985599814099999999749969995189854799997799878246689
Q gi|254780777|r  164 GTQ-VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       164 ~td-vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      .|. ||||||+||+++|+|++++++||+|+++.+.++||.+|+.+|+++++|++|||.++|++|.+++.||.+||+|+.|
T Consensus       160 at~~VDGVYd~DP~k~~dA~k~~~ls~~e~l~~~L~vMD~tA~~lc~~~~ipi~Vfn~~~~g~l~ka~~Ge~iGT~V~~~  239 (247)
T PRK12443        160 AKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  239 (247)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEECCC
T ss_conf             05665776468988999754443337999998699442999999999739988998289986399996799863288188


No 9  
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00  E-value=0  Score=306.38  Aligned_cols=235  Identities=19%  Similarity=0.231  Sum_probs=194.4

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             82499999400368538877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST   84 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (242)
                      +.||||||+|+|+|+++++. ++.++|..+++||++++++|++|++||||+. +.+.........+.+..+.+++...++
T Consensus         7 ~~krIVIKiGSs~Lt~~~g~-l~~~~i~~l~~~I~~L~~~G~evilVSSGAI-a~G~~~L~~~~rp~~l~~~QA~AAvGQ   84 (372)
T PRK05429          7 DARRIVVKVGSSLLTDDGGG-LDRARIAELARQIAALRAAGHEVVLVSSGAV-AAGRSRLGLPKRPKTLAEKQAAAAVGQ   84 (372)
T ss_pred             CCCEEEEECCCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHHHCCCCCCCCCHHHHHHHHHHCH
T ss_conf             28789999174336898888-8899999999999999978999999884079-862776099988563778889987156


Q ss_pred             HHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999761886411--3400100245665432-100001100111112465-----567776215788888641
Q gi|254780777|r   85 VINALALDLALRKINVPTVI--LSSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEI  156 (242)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~~  156 (242)
                      ..++..|...|..++..+.+  ++..++..+..+.+.+ ....+++.+.+|++++.+     ++.|||||++|+++|.++
T Consensus        85 ~~Lm~~Y~~~f~~~~~~~aQiLlT~~D~~~r~rylN~r~tl~~Ll~~gvIPIINENDtVat~Ei~fGDND~LaA~VA~li  164 (372)
T PRK05429         85 SRLMQAYEELFARYGITVAQILLTRDDLSDRERYLNARATLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLV  164 (372)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999863985578862665640458999999999999877960001477740005555578515882687773


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHH----------HCCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             6446651475435123432234444444411599--998----------5599814099999999749969995189854
Q gi|254780777|r  157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFI----------EKGLKVMDCASVVLARDCSIPIIVFSIHSPG  224 (242)
Q Consensus       157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l----------~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~  224 (242)
                      +||+|+++|||||+||+||+.+|+|++|+++...  +..          +.|+|.+|+.||++|.++||+++|+||++|+
T Consensus       165 ~ADlLiiLTdvdGly~~~P~~~~~A~~I~~v~~i~~~i~~~~~~~~s~~GtGGM~tKl~AA~~a~~~Gi~~iIa~G~~~~  244 (372)
T PRK05429        165 EADLLILLTDIDGLYTADPRKNPDAKLIPEVEAITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGRKPD  244 (372)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             88779997456753358997686540441205787789987168877887784377999999999779989992499965


Q ss_pred             HHHHHHCCCCCCCEECC
Q ss_conf             79999779987824668
Q gi|254780777|r  225 GIWGGLSGIGRSTIISG  241 (242)
Q Consensus       225 ~i~~~l~Ge~~GT~I~~  241 (242)
                      .|.++++|+.+||++.|
T Consensus       245 ~l~~i~~g~~~GT~f~~  261 (372)
T PRK05429        245 VLLRLLAGEAVGTLFLP  261 (372)
T ss_pred             HHHHHHCCCCCEEEEEC
T ss_conf             89999779972699943


No 10 
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00  E-value=0  Score=304.77  Aligned_cols=235  Identities=17%  Similarity=0.161  Sum_probs=186.4

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             88249999940036853887770899999999999999976990999823654102334420377775402467888889
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLS   83 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (242)
                      -.|||||||+|+|+|+++++ +++.++|.++|++|++++++|++|++|+||+.. .++........+ ...+.++....+
T Consensus         3 ~~~kRIVIKiGSs~lt~~~g-~l~~~~i~~l~~~I~~L~~~G~evilVSSGAia-~G~~~L~~~~rp-~l~~kQA~AAvG   79 (363)
T PRK13402          3 SPWKRIVVKVGSALITPHKQ-GCSSHYLLGIAQFIVYLRAQGHQVVLVSSGSVA-AGYHKLGFIDRP-SVPEKKAMAAAG   79 (363)
T ss_pred             CCCCEEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHCCCCCCC-CHHHHHHHHHHH
T ss_conf             98866999967010689999-878999999999999999789989998878799-647760997689-757888999853


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHC
Q ss_conf             89999999999976188641134001002456654321-0000110011111246-----55677762157888886416
Q gi|254780777|r   84 TVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRN-AVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIG  157 (242)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~  157 (242)
                      +..++..|...| .....+.+++..++..+..+.+.+. ...+++.+.+|++++.     .|+.|||||++|+++|.+++
T Consensus        80 Q~~Lm~~Y~~~F-~~~~AQiLLT~~D~~~r~rylN~r~Tl~~Ll~~gvIPIINENDtVat~Ei~fGDND~LaA~VA~li~  158 (363)
T PRK13402         80 QGDMMATWSKLF-DFPAAQLLLTHGDLRDRERYISIRNTINVLLEHGILPIINENDAVTTDKLKVGDNDNLSAMVAALAD  158 (363)
T ss_pred             HHHHHHHHHHHH-CCHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
T ss_conf             999999999984-7357677188878616478899999999999689422115888501001211575079999998718


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHH----------HCCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             446651475435123432234444444411599--998----------55998140999999997499699951898547
Q gi|254780777|r  158 ADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFI----------EKGLKVMDCASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       158 ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l----------~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
                      ||.|+++|||||+||+||+.+|+|++|++++..  +..          +.|+|.+|+.||++|.++||+++|+||++|++
T Consensus       159 ADlLilLTDvdGLYd~dP~~~~~AklI~~V~~i~~~i~~~a~~~~s~~GtGGM~TKl~AA~~a~~~Gi~~~Ia~G~~~~~  238 (363)
T PRK13402        159 ADTLIICSDVDGLYDQNPRTNPDAKLIKEVTEINAEIYAMAGGAGSEVGTGGMRTKIQAAKKAISHGIETFIINGFTADI  238 (363)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH
T ss_conf             88899941668444799877876643678515667789871687788887834789999999997799699816999747


Q ss_pred             HHHHHCCCCCCCEECCC
Q ss_conf             99997799878246689
Q gi|254780777|r  226 IWGGLSGIGRSTIISGE  242 (242)
Q Consensus       226 i~~~l~Ge~~GT~I~~~  242 (242)
                      |.++++|+.+||++.|.
T Consensus       239 i~~i~~g~~~GT~F~p~  255 (363)
T PRK13402        239 FNQLLKGQNPGTLFTPD  255 (363)
T ss_pred             HHHHHCCCCCCEEEECC
T ss_conf             99997089862499547


No 11 
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00  E-value=4.2e-45  Score=298.02  Aligned_cols=236  Identities=19%  Similarity=0.284  Sum_probs=198.1

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             82499999400368538877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST   84 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (242)
                      ++||||+|||+|+|+++.+ .++..+|..++++|++++++|+||+|||||+ .+.+....+....+......++....++
T Consensus         5 ~~~riVvKiGSs~Lt~~~g-~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-iaaG~~~Lg~~~rp~~l~~kQA~AAVGQ   82 (369)
T COG0263           5 SARRIVVKIGSSSLTDGTG-GLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IAAGRTRLGLPKRPKTLAEKQAAAAVGQ   82 (369)
T ss_pred             CCEEEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHCHHHCCCCCCCCCHHHHHHHHHHCH
T ss_conf             6537999977502357999-8298999999999999986898899983446-6517444199988761288899987379


Q ss_pred             HHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHH-CCHHHHCCCCCCCCCC-----CCCCCCCHHHHHHHHHHH
Q ss_conf             999999999997618864--11340010024566543210-0001100111112465-----567776215788888641
Q gi|254780777|r   85 VINALALDLALRKINVPT--VILSSIFMPQVCEVFSCRNA-VSYLSQGKVVIFSGGT-----GNAFLTTDSAAALRASEI  156 (242)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~D~~a~~ia~~~  156 (242)
                      ..++..|...|..++++.  .+++..+...+....+.+.+ ..+++.+.+|++++.+     |+.|||||++++++|.++
T Consensus        83 ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv  162 (369)
T COG0263          83 VRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV  162 (369)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf             99999999999860974568986031200089999999999999978962246487860441036568746999999874


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             6446651475435123432234444444411599--9985----------599814099999999749969995189854
Q gi|254780777|r  157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYN--QFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPG  224 (242)
Q Consensus       157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~--e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~  224 (242)
                      +||.|+++||+||+||+||+++|+|++|+++...  |...          .|+|.+|+.|+++|.++||+++|+||.+|+
T Consensus       163 ~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~  242 (369)
T COG0263         163 GADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPD  242 (369)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             87879998746855589988799874610213468889987467777777561888999999999769958994699831


Q ss_pred             HHHHHHCCCCCCCEECCC
Q ss_conf             799997799878246689
Q gi|254780777|r  225 GIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       225 ~i~~~l~Ge~~GT~I~~~  242 (242)
                      .|.+++.|+.+||++.++
T Consensus       243 ~i~~~~~~~~~GT~F~~~  260 (369)
T COG0263         243 VILDALEGEAVGTLFEPQ  260 (369)
T ss_pred             HHHHHHHCCCCCCEEECC
T ss_conf             589997189885189358


No 12 
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00  E-value=5.6e-45  Score=296.94  Aligned_cols=231  Identities=18%  Similarity=0.267  Sum_probs=180.8

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999400368538877708999999999999999769909998236541023344203777754024678888898999
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN   87 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
                      |||||+|||+|+++++ +++.++|+++|++|++++++|++|++||||+.. .+....+....+.+..+.++....++..+
T Consensus         1 RiViKiGss~lt~~~~-~~~~~~i~~la~~I~~l~~~G~evvlVsSGAva-~G~~~l~~~~~~~~~~~~qa~AavGQ~~L   78 (251)
T cd04242           1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVA-AGRQRLGLEKRPKTLPEKQALAAVGQSLL   78 (251)
T ss_pred             CEEEEECCCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HCHHHCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf             9899967011689999-859999999999999999789979998247566-18765399878640577889998571999


Q ss_pred             HHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHH-HHCCHHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHCHH
Q ss_conf             999999997618864113--400100245665432-10000110011111246-----5567776215788888641644
Q gi|254780777|r   88 ALALDLALRKINVPTVIL--SSIFMPQVCEVFSCR-NAVSYLSQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGAD  159 (242)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~a~~ia~~~~ad  159 (242)
                      +.+|...|..++.++.+.  +...+..+....+.+ ....+++.+.+|++++.     .++.|+|||++|+++|.+++||
T Consensus        79 m~~y~~~f~~~g~~~aQiLlt~~d~~~~~~~~n~~~ti~~LL~~g~iPIiNEND~vat~ei~fGDnD~lAa~vA~~i~Ad  158 (251)
T cd04242          79 MALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNAD  158 (251)
T ss_pred             HHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             99999998872985003523565402749999999999999978964675588855212233447747999998651888


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHH----------CCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf             665147543512343223444444441159--99985----------599814099999999749969995189854799
Q gi|254780777|r  160 VILKGTQVDGVYSADPRVHASSTRFDSLTY--NQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIW  227 (242)
Q Consensus       160 ~l~i~tdvdGiyt~dP~~~~~ak~i~~is~--~e~l~----------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~  227 (242)
                      .|+++|||||+||+||+++|+|++|++++.  ++...          .|+|..|+.|+++|.++|+|++|+||++|++|.
T Consensus       159 ~LiilTdVDGvY~~dP~~~~~Ak~i~~v~~~~~~i~~~~~~~~s~~gtGGM~sKl~AA~~a~~~Gi~~~I~~g~~~~~i~  238 (251)
T cd04242         159 LLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLL  238 (251)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf             79996446732368987687666342635798799977077888887387389999999999889969998289977899


Q ss_pred             HHHCCCCCCCEEC
Q ss_conf             9977998782466
Q gi|254780777|r  228 GGLSGIGRSTIIS  240 (242)
Q Consensus       228 ~~l~Ge~~GT~I~  240 (242)
                      ++++||.+||++.
T Consensus       239 ~~l~g~~vGT~f~  251 (251)
T cd04242         239 DILAGEAVGTLFL  251 (251)
T ss_pred             HHHCCCCCCEEEC
T ss_conf             9976999841669


No 13 
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00  E-value=7.1e-44  Score=290.17  Aligned_cols=234  Identities=14%  Similarity=0.108  Sum_probs=181.6

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH---------------CCCCC
Q ss_conf             2499999400368538877708999999999999999769909998236541-0233442---------------03777
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-FRGSQVV---------------AENYL   69 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-~~~~~~~---------------~~~~~   69 (242)
                      -||||||+|||+|+++++..++.++++++|++|++++++|++++|||||+.. ++.....               .....
T Consensus         8 ~krIVIKiGss~lt~~d~~~~~~~~i~~l~~~I~~L~~~G~evvlVsSGAv~~G~~~l~~~~~~~~~~~~~~~~~~~~~~   87 (284)
T cd04256           8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM   87 (284)
T ss_pred             CCEEEEEECHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCHHHCCHHCCCCHHHHHHCCCCCCCC
T ss_conf             87899995702237999997589999999999999997899699990684653811421100022024433022345557


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHH-HHHHCCHHHHCCCCCCCCCC-----C--
Q ss_conf             75402467888889899999999999761886411340--01002456654-32100001100111112465-----5--
Q gi|254780777|r   70 LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSS--IFMPQVCEVFS-CRNAVSYLSQGKVVIFSGGT-----G--  139 (242)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~--  139 (242)
                      +....+.+++...++..++..|...|..+++.+.+...  .+...+....+ ......+++.+.+|++++.+     +  
T Consensus        88 ~~~~~~~qa~aavGQ~~Lm~~y~~~f~~~~~~~aQiLlt~~D~~~r~~~~n~~~tl~~Ll~~gvIPIvNEND~Va~~e~~  167 (284)
T cd04256          88 PQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEP  167 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
T ss_conf             52007899999820999999999999875981688727877730279999999999999738978576378610246556


Q ss_pred             -------CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HH--------CCCCCCCH
Q ss_conf             -------67776215788888641644665147543512343223444444441159999--85--------59981409
Q gi|254780777|r  140 -------NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF--IE--------KGLKVMDC  202 (242)
Q Consensus       140 -------~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~--l~--------~G~~v~~~  202 (242)
                             +.|+|||.+|+++|.+++||+|+++|||||+||+||+ +|+|++|+++...|.  +.        .|+|..|+
T Consensus       168 ~~d~~~~i~fgDND~Laa~vA~~i~Ad~LillTDVdGlyd~~P~-~~~akli~~i~~~d~~~~~~~~~s~~gtGGM~tKi  246 (284)
T cd04256         168 DEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKV  246 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHH
T ss_conf             41123431135601899998876188889997257720269999-99874421455664888745788997617879999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             99999997499699951898547999977998782466
Q gi|254780777|r  203 ASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       203 ~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      .||++|.++||+++|+||++|++|.++++||.+||++|
T Consensus       247 ~AA~~a~~~Gi~~~I~nG~~~~~i~~i~~g~~vGT~Ft  284 (284)
T cd04256         247 KAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT  284 (284)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEC
T ss_conf             99999997899799950899668999976999882549


No 14 
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00  E-value=4.6e-42  Score=279.00  Aligned_cols=212  Identities=30%  Similarity=0.446  Sum_probs=169.5

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999400368538877708999999999999999769909998236541023344203777754024678888898999
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVIN   87 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (242)
                      |||||||||+|+++.    +.+++.+++++|++++ ++++++||+|||+++|.+....+.. ......+++++...++++
T Consensus         1 RIViKiGgs~l~~~~----~~~~i~~la~~i~~l~-~~~~~iiVvggG~~ar~~~~~~~~~-~~~~~~~~~~g~~~t~~n   74 (221)
T cd04253           1 RIVISLGGSVLAPEK----DADFIKEYANVLRKIS-DGHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLN   74 (221)
T ss_pred             CEEEEEEHHHCCCCC----CHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
T ss_conf             979996077707998----8799999999999997-5996999987777887699999985-978999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCC
Q ss_conf             99999999761886411340010024566543210000110011111246556777621578888864164466514754
Q gi|254780777|r   88 ALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQV  167 (242)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdv  167 (242)
                      +.++...+........             ...+.....++.+.+++..+.  .+..++|++|+++|.+++||.|+++|||
T Consensus        75 a~~l~~~~~~~~~~~~-------------~~~~~~~~~l~~~~i~v~~g~--~p~~ttD~laa~vA~~i~Ad~li~ltdV  139 (221)
T cd04253          75 ARLLIAALGDAYPPVP-------------TSYEEALEAMFTGKIVVMGGT--EPGQSTDAVAALLAERLGADLLINATNV  139 (221)
T ss_pred             HHHHHHHHHCCCCCCC-------------CCHHHHHHHHHCCCEEEEECC--CCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999997404587664-------------659999999974986999478--8988867999999998298747886435


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHC---------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCE
Q ss_conf             3512343223444444441159999855---------9981409999999974996999518985479999779987824
Q gi|254780777|r  168 DGVYSADPRVHASSTRFDSLTYNQFIEK---------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI  238 (242)
Q Consensus       168 dGiyt~dP~~~~~ak~i~~is~~e~l~~---------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~  238 (242)
                      ||+||+||+++|+|++|++++++|++++         ++++++..|+++|+++|+|++|+||++|++|.++++||++||+
T Consensus       140 dGvY~~DP~~~~~Ak~i~~is~~el~~~~~~~~~~~g~~~~~d~~Aa~~a~~~gi~~~I~nG~~~~~i~~~l~Ge~vGTl  219 (221)
T cd04253         140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI  219 (221)
T ss_pred             CCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEE
T ss_conf             87557898779987788658899999883567756898764799999999987998899869997589999779999716


Q ss_pred             EC
Q ss_conf             66
Q gi|254780777|r  239 IS  240 (242)
Q Consensus       239 I~  240 (242)
                      |.
T Consensus       220 I~  221 (221)
T cd04253         220 IE  221 (221)
T ss_pred             EC
T ss_conf             69


No 15 
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine .   In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional.   This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes.   Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=100.00  E-value=2.8e-42  Score=280.29  Aligned_cols=221  Identities=22%  Similarity=0.271  Sum_probs=178.1

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC----------------
Q ss_conf             24999994003685388777089--9999999999999976990999823654--102334420----------------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDI--DSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA----------------   65 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~--~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~----------------   65 (242)
                      |.+||.||||+|+.+       .  ++|+++|+.|.+..++|+++++|+|+.+  +-++.....                
T Consensus         1 m~~iV~KFGGTSVg~-------~PverI~~~A~~v~~~~~~g~~vvVVVSA~~g~Td~Lv~~~~~~~~~~~~~~~~~~~~   73 (504)
T TIGR00657         1 MMLIVQKFGGTSVGN-------APVERIRRVAKIVLKEKEKGNQVVVVVSAMAGVTDALVELAEKVSPGPSAAQEKEFLE   73 (504)
T ss_pred             CCEEEEEECCEEECC-------CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             974799736757667-------3237899999988887535897389997377533689999986046443303679999


Q ss_pred             -----------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC
Q ss_conf             -----------------------------------------37777540246788888989999999999976188--64
Q gi|254780777|r   66 -----------------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINV--PT  102 (242)
Q Consensus        66 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  102 (242)
                                                               ........++.+...+.+..++..++..++..+|.  +.
T Consensus        74 ~Ir~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~L~~~~~LGe~~~~~~D~ilS~GE~~S~~l~~~~l~~~G~K~~~  153 (504)
T TIGR00657        74 KIREKHLEILERLIIPQAIAEKLKRLLDAELVLLKKVLLGISYLGEVTPREMDRILSVGERLSIALLSAALEELGVKAKA  153 (504)
T ss_pred             HHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99984000477740773368999999998899999999987873468868744131203588899999999745785201


Q ss_pred             CCCCCCHHHHH--------------HHHHHHHHHCCHHHHC-CCCCCCCCC---------CCCCCCCHHHHHHHHHHHCH
Q ss_conf             11340010024--------------5665432100001100-111112465---------56777621578888864164
Q gi|254780777|r  103 VILSSIFMPQV--------------CEVFSCRNAVSYLSQG-KVVIFSGGT---------GNAFLTTDSAAALRASEIGA  158 (242)
Q Consensus       103 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~a  158 (242)
                      ..+........              ............++.+ .+|++-|+.         .+.+|++|++|+++|.+++|
T Consensus       154 ~~l~~~~~~I~T~~~~~~A~p~~~~~~~~~~~rL~~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~aL~A  233 (504)
T TIGR00657       154 VSLTGAQAGILTDSNFGRARPDLAVIIEILTERLEPLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAALKA  233 (504)
T ss_pred             CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             22114745455447667641202467776699999998469879998400410577507983068068999999986199


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHH-CCCCEEEEECCCCCHHHHHHCCCC
Q ss_conf             4665147543512343223444444441159999855---998140999999997-499699951898547999977998
Q gi|254780777|r  159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARD-CSIPIIVFSIHSPGGIWGGLSGIG  234 (242)
Q Consensus       159 d~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~-~gI~v~I~ng~~~~~i~~~l~Ge~  234 (242)
                      |.|.||||||||||+|||..|+||+|++|||+||+|+   |+||+||+++++|++ ++||++|.|.++|         +.
T Consensus       234 d~~~IyTDV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAKVLHPr~~ep~~~~~~ip~~v~st~~~---------~a  304 (504)
T TIGR00657       234 DECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRDYKIPIVVKSTFNP---------EA  304 (504)
T ss_pred             CEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCCC---------CC
T ss_conf             689998727950327886376652045448789999985031653278899984679951899607788---------99


Q ss_pred             CCCEECCC
Q ss_conf             78246689
Q gi|254780777|r  235 RSTIISGE  242 (242)
Q Consensus       235 ~GT~I~~~  242 (242)
                      .||+|.++
T Consensus       305 ~GT~I~~~  312 (504)
T TIGR00657       305 PGTLIVAS  312 (504)
T ss_pred             CCEEECCC
T ss_conf             96687177


No 16 
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818   Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes.   Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected.   This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=100.00  E-value=9.2e-40  Score=264.80  Aligned_cols=215  Identities=29%  Similarity=0.391  Sum_probs=191.2

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769--90999823654102334420377-77540246788888989
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKG--IEIGIVVGGGNIFRGSQVVAENY-LLCERSTVDSMGMLSTV   85 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g--~~vviV~sg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   85 (242)
                      |||+||||+|..++   +|.|++..+|+.|.++..+|  |+|.||+|||..+|.|....+.. +..+...++.+|...++
T Consensus         1 iV~~LGGsV~~~~~---~d~e~~~~~A~~l~~~~~~Gek~~v~vVvGGG~~AR~YI~~aR~lnPG~~E~~lD~iGI~~TR   77 (232)
T TIGR02076         1 IVISLGGSVLSPEN---IDAEKIKEYANILRKLSDEGEKHKVGVVVGGGKTAREYIGVARELNPGASETFLDEIGIDATR   77 (232)
T ss_pred             CEEECCCEEECCCC---CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             97833451616888---887899999999999984499468998878876588999999860888880245677799999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCC
Q ss_conf             99999999997618864113400100245665432100001100111112465567776215788888641644665147
Q gi|254780777|r   86 INALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT  165 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~t  165 (242)
                      ++++++..++.....+..+....+...            ....+.+++..|++  |..++|..||++|..++||.|++.|
T Consensus        78 LNA~LLi~aL~~~a~p~vP~~~~EA~~------------~~~~~~ivVmGGt~--PGhtTDAVAA~lAE~~~ad~L~~~T  143 (232)
T TIGR02076        78 LNAMLLIAALGDDAYPKVPENFEEALE------------AMSLGKIVVMGGTE--PGHTTDAVAALLAEFLEADLLINAT  143 (232)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHH------------HHHCCCEEEECCCC--CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999987163358989889899999------------98269879866878--9852899999997662687269982


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---------C-CCCCCHHHHHHHHHCCCCEEEEECCC--CCHHHH-H-HC
Q ss_conf             543512343223444444441159999855---------9-98140999999997499699951898--547999-9-77
Q gi|254780777|r  166 QVDGVYSADPRVHASSTRFDSLTYNQFIEK---------G-LKVMDCASVVLARDCSIPIIVFSIHS--PGGIWG-G-LS  231 (242)
Q Consensus       166 dvdGiyt~dP~~~~~ak~i~~is~~e~l~~---------G-~~v~~~~A~~~a~~~gI~v~I~ng~~--~~~i~~-~-l~  231 (242)
                      +||||||+||+++|+|+++++++|+|+.+.         | ..++|+.|++++++++|.++|+|+++  |++|.+ + ++
T Consensus       144 nVDGVYd~DP~~~~~A~~~~~l~~~eL~~i~~G~~~~~AG~~~~~D~lA~kii~Rs~i~t~V~~~~dfr~~~l~~~~n~~  223 (232)
T TIGR02076       144 NVDGVYDKDPNKYPDAKKFDKLTPEELVEIVRGSSSLKAGSSEVVDPLAAKIIERSKIRTIVVNGRDFRPENLEKIVNLK  223 (232)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             26852177778887840002589889999860441127899752448899999747954899648545888999998725


Q ss_pred             CCCCCCEEC
Q ss_conf             998782466
Q gi|254780777|r  232 GIGRSTIIS  240 (242)
Q Consensus       232 Ge~~GT~I~  240 (242)
                      ||+.||.|.
T Consensus       224 Ge~~GT~I~  232 (232)
T TIGR02076       224 GEIVGTIIE  232 (232)
T ss_pred             CCCCCCEEC
T ss_conf             886876209


No 17 
>PRK07431 aspartate kinase; Provisional
Probab=100.00  E-value=4e-39  Score=260.86  Aligned_cols=219  Identities=22%  Similarity=0.300  Sum_probs=179.2

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             24999994003685388777089999999999999997699099982365--4102334420377775402467888889
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS   83 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (242)
                      |+.||.||||||+.+       .++++++++.|.+.+++|+++++|+|+.  .+-++...........+.++++.....+
T Consensus         1 M~lIV~KFGGTSVa~-------~e~i~~va~~I~~~~~~g~~vvVVVSAmg~~Td~L~~la~~i~~~~~~re~D~lls~G   73 (594)
T PRK07431          1 MALIVQKFGGTSVGS-------VERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAEEISDNPPRREMDMLLSTG   73 (594)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             974998428765798-------9999999999999987589999997499872999999999874799989999999775


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH---------HHHHCCHHHHCCCCCCCCC-----------CCCCCC
Q ss_conf             89999999999976188641134001002456654---------3210000110011111246-----------556777
Q gi|254780777|r   84 TVINALALDLALRKINVPTVILSSIFMPQVCEVFS---------CRNAVSYLSQGKVVIFSGG-----------TGNAFL  143 (242)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------~~~~~~  143 (242)
                      .+.+..++...+...|.+...++..+........+         .......++.+.++++.++           +.+.+|
T Consensus        74 E~~S~~Lla~~L~~~G~~a~sl~~~q~gi~Td~~~~~A~i~~i~~~~i~~~l~~~~v~Vv~GFqGi~~~~~~eiTTLGRG  153 (594)
T PRK07431         74 EQVSIALLSMALQELGQPAISLTGAQVGIVTESEHGRARILEIKTERIQRHLDAGKVVVVAGFQGISLSSGLEITTLGRG  153 (594)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCC
T ss_conf             99999999999996899719920001617767987867305068999999986299179960001257998615650688


Q ss_pred             CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEEC
Q ss_conf             6215788888641644665147543512343223444444441159999855---9981409999999974996999518
Q gi|254780777|r  144 TTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSI  220 (242)
Q Consensus       144 ~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng  220 (242)
                      ++|++|+.+|.+++|+.|.+||||||+||+|||.+|+|++|++|||+|++|+   |++|+|++++++|+++|||++|.|.
T Consensus       154 GSD~TA~~lAaaL~Ad~~eI~TDVdGV~TaDPriv~~Ar~i~~ISY~Em~ELa~~GAkVLhprsVe~A~k~~IPI~Vrst  233 (594)
T PRK07431        154 GSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSS  233 (594)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             72679999998648989999635672364699868886285712799999999758774567789999973996599667


Q ss_pred             CCCCHHHHHHCCCCCCCEECC
Q ss_conf             985479999779987824668
Q gi|254780777|r  221 HSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       221 ~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      +.+          .+||+|+.
T Consensus       234 f~~----------~~GT~I~~  244 (594)
T PRK07431        234 WSD----------APGTLLTS  244 (594)
T ss_pred             CCC----------CCCCEEEC
T ss_conf             889----------99857844


No 18 
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00  E-value=2.6e-38  Score=255.84  Aligned_cols=215  Identities=26%  Similarity=0.352  Sum_probs=173.2

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769909998236--54102334420377775402467888889899
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
                      ||+||||||+.+       .+++++++++|++..++|+++++|+|+  +.+.++.............++.+.....+.++
T Consensus         2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~g~~viVVvSA~gg~Td~L~~l~~~~~~~~~~~~~d~ils~GE~l   74 (239)
T cd04246           2 IVQKFGGTSVAD-------IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQI   74 (239)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             899878100499-------9999999999999986798299998489865677999888764772588999999988999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHH---------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH
Q ss_conf             99999999976188641134001002456---------65432100001100111112465---------5677762157
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCE---------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA  148 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~  148 (242)
                      +..++...+...|.+...+...+......         ..........++.+.++++.++.         .+.+|++|++
T Consensus        75 s~~lla~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~t  154 (239)
T cd04246          75 SAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTT  154 (239)
T ss_pred             HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf             99999999997599808857323625304641022233530556665552454479733234489985688179964799


Q ss_pred             HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             8888864164466514754351234322344444444115999985---5998140999999997499699951898547
Q gi|254780777|r  149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
                      |+++|.+++|+.+.+||||||+||+||+.+|+|++|+++||+|+++   .|++|+|++|+++++++|||++|.|.++|  
T Consensus       155 Aa~iA~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~I~nt~~~--  232 (239)
T cd04246         155 AVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSE--  232 (239)
T ss_pred             HHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf             999999728888999718972573899968766572752799999998689842589999999986995899848989--


Q ss_pred             HHHHHCCCCCCCEEC
Q ss_conf             999977998782466
Q gi|254780777|r  226 IWGGLSGIGRSTIIS  240 (242)
Q Consensus       226 i~~~l~Ge~~GT~I~  240 (242)
                             + .||+||
T Consensus       233 -------~-~GT~Is  239 (239)
T cd04246         233 -------N-PGTLIT  239 (239)
T ss_pred             -------C-CCCEEC
T ss_conf             -------8-987759


No 19 
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00  E-value=1.3e-38  Score=257.76  Aligned_cols=221  Identities=24%  Similarity=0.282  Sum_probs=177.2

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC-----------------
Q ss_conf             249999940036853887770899999999999999976990999823654--1023344203-----------------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE-----------------   66 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~-----------------   66 (242)
                      |+++|.||||||+.+       .+++.++++.|++..++|+++++|+|++.  +..+......                 
T Consensus         1 m~~iV~KFGGTSva~-------~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~   73 (447)
T COG0527           1 MRLIVQKFGGTSVAD-------AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIA   73 (447)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             950899868755388-------8999999999985463397189997898774589999986331445205788899999


Q ss_pred             --CCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-
Q ss_conf             --7777--------------------------54024678888898999999999997618864113400100245665-
Q gi|254780777|r   67 --NYLL--------------------------CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVF-  117 (242)
Q Consensus        67 --~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  117 (242)
                        ....                          .+.+..+.....+...+..++...+...|++....+..+........ 
T Consensus        74 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lls~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~  153 (447)
T COG0527          74 SELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNH  153 (447)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECHHHCEEEECCCC
T ss_conf             98741510456676666666676666664147987899999850548899999999996799659975588425535766


Q ss_pred             --------HHHH-HCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             --------4321-00001100111112465---------56777621578888864164466514754351234322344
Q gi|254780777|r  118 --------SCRN-AVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHA  179 (242)
Q Consensus       118 --------~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~  179 (242)
                              .... ....++.+.++++.|+.         .+.+|++|++|+++|.+++||+|.||||||||||+|||.+|
T Consensus       154 ~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp  233 (447)
T COG0527         154 GNARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVP  233 (447)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             65531035566667887446977995186651699988984798478899999997199889999878877568997788


Q ss_pred             CCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             4444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  180 SSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       180 ~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +|++|+++||+|++++   |++|+|++|+++|++++||++|.|.++|         +..||+|+++
T Consensus       234 ~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p---------~~~GTlI~~~  290 (447)
T COG0527         234 DARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNP---------DAPGTLITAE  290 (447)
T ss_pred             CCEECCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECCCC---------CCCCEEEECC
T ss_conf             64576846999999999778521499888899876991899716999---------9995399567


No 20 
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and 
Probab=100.00  E-value=5.9e-38  Score=253.66  Aligned_cols=215  Identities=26%  Similarity=0.348  Sum_probs=172.0

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769909998236--54102334420377775402467888889899
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
                      ||+||||||+.+       .++++++++.|++..++|+++++|+|+  +.+.++...........+.++++.....+.+.
T Consensus         2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~~~~~~~~~e~d~ils~GE~l   74 (239)
T cd04261           2 IVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQV   74 (239)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             899978201399-------9999999999998986699289997798753688999999870699989998887777999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHH---------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH
Q ss_conf             999999999761886411340010024---------5665432100001100111112465---------5677762157
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQV---------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA  148 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~  148 (242)
                      +..++...+...|++.......+....         ............++...++++.++.         .+.+|++|++
T Consensus        75 sa~ll~~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~t  154 (239)
T cd04261          75 SIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTS  154 (239)
T ss_pred             HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf             99999999997699757968666754315752045568899999986402455589734655478884688279946889


Q ss_pred             HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             8888864164466514754351234322344444444115999985---5998140999999997499699951898547
Q gi|254780777|r  149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
                      |+++|.+++|+.+++||||||+||+|||.+|+|++|+++||+|+.+   .|++|+|++|+++++++|||++|.|.++|  
T Consensus       155 Aai~A~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlHp~ai~p~~~~~Ipi~i~nt~~p--  232 (239)
T cd04261         155 AVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE--  232 (239)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf             999999669888999818983275899968876773770799999999689731589999999986994899708989--


Q ss_pred             HHHHHCCCCCCCEEC
Q ss_conf             999977998782466
Q gi|254780777|r  226 IWGGLSGIGRSTIIS  240 (242)
Q Consensus       226 i~~~l~Ge~~GT~I~  240 (242)
                             + .||+||
T Consensus       233 -------~-~GT~Is  239 (239)
T cd04261         233 -------E-PGTLIT  239 (239)
T ss_pred             -------C-CCCEEC
T ss_conf             -------7-988859


No 21 
>PRK08841 aspartate kinase; Validated
Probab=100.00  E-value=1.4e-37  Score=251.32  Aligned_cols=220  Identities=23%  Similarity=0.288  Sum_probs=175.5

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             24999994003685388777089999999999999997699099982365--4102334420377775402467888889
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS   83 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (242)
                      |+.||.||||||+.+       .++++++++.|.+..++|+++++|+|+.  .+-++.............++++.....+
T Consensus         1 M~~iV~KFGGTSv~~-------~e~i~~va~~i~~~~~~~~~vvVVvSAm~g~Td~Ll~la~~i~~~~~~relD~lls~G   73 (392)
T PRK08841          1 MPLIVQKFGGTSVGS-------IERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG   73 (392)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             987999158635799-------9999999999998875699899996289996899999998632599989999999765


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---------HHHHHCCHHHHCCCCCCCCCC---------CCCCCCC
Q ss_conf             8999999999997618864113400100245665---------432100001100111112465---------5677762
Q gi|254780777|r   84 TVINALALDLALRKINVPTVILSSIFMPQVCEVF---------SCRNAVSYLSQGKVVIFSGGT---------GNAFLTT  145 (242)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  145 (242)
                      .+.+..+++..+...|.+...+...+........         ........++...++++.++.         .+.+|++
T Consensus        74 E~lS~~lla~~L~~~G~~a~~l~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGS  153 (392)
T PRK08841         74 EQVSMALLAMTLNKLGYKARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS  153 (392)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECHHCCCCCCCCCCCEEEEHHCHHHHHHHHHCCCEEEECCEEECCCCCCEEECCCCCH
T ss_conf             99999999999986799757987123351246777643520203387998873598699418201079998756279977


Q ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf             15788888641644665147543512343223444444441159999855---998140999999997499699951898
Q gi|254780777|r  146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHS  222 (242)
Q Consensus       146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~  222 (242)
                      |++|+++|.+++|+.|.+||||||+||+|||.+|+|++++++||+|++++   |++|+|++++++|++++||++|.|.++
T Consensus       154 D~sA~~lAa~l~A~~~eIwTDVdGv~taDPr~V~~A~~l~~isy~Ea~ELa~~GAkVlHp~tv~pa~~~~Ipi~v~ntf~  233 (392)
T PRK08841        154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE  233 (392)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf             99999999980997899985677636379868768728264789999999976996368889999987597599983687


Q ss_pred             CCHHHHHHCCCCCCCEECCC
Q ss_conf             54799997799878246689
Q gi|254780777|r  223 PGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       223 ~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +          ..||+|+++
T Consensus       234 ~----------~~GT~I~~~  243 (392)
T PRK08841        234 D----------GEGTLIKGE  243 (392)
T ss_pred             C----------CCCEEEECC
T ss_conf             9----------998289667


No 22 
>PRK06635 aspartate kinase; Reviewed
Probab=100.00  E-value=2.2e-37  Score=250.15  Aligned_cols=220  Identities=22%  Similarity=0.306  Sum_probs=175.5

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             24999994003685388777089999999999999997699099982365--4102334420377775402467888889
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENYLLCERSTVDSMGMLS   83 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (242)
                      ||+||.||||||+.+       .+.++++++.|....++|+++++|+|+.  .+-.+...........+.++.+.....+
T Consensus         1 M~~iV~KFGGtSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~Li~la~~~~~~~~~~e~d~ils~G   73 (402)
T PRK06635          1 MALIVQKFGGTSVGD-------VERIKNVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPAPDPRELDMLLSTG   73 (402)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             977999578503699-------9999999999987887299989996499987899999999860799879999999871


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHHCCHHHHCCCCCCCCCC---------CCCCCCC
Q ss_conf             899999999999761886411340010024566---------5432100001100111112465---------5677762
Q gi|254780777|r   84 TVINALALDLALRKINVPTVILSSIFMPQVCEV---------FSCRNAVSYLSQGKVVIFSGGT---------GNAFLTT  145 (242)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  145 (242)
                      .+.+..++...+...|++...+...+.......         .........+....++++.|+.         .+.+|++
T Consensus        74 E~~S~~l~a~~L~~~g~~a~~~~~~~~~i~td~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLgRGGS  153 (402)
T PRK06635         74 EQVSVALLAMALQSLGVKARSFTGWQAPIITDSAHGKARITDIDPDRIREALDEGKVVVVAGFQGVDEDGEITTLGRGGS  153 (402)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEECHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEECCCCCEEEECCCCC
T ss_conf             79999999999985799858914787855315654552411422788999984697799737312257896677358872


Q ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf             15788888641644665147543512343223444444441159999855---998140999999997499699951898
Q gi|254780777|r  146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHS  222 (242)
Q Consensus       146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~  222 (242)
                      |++|+++|.+++|+.+.+||||||+||+|||.+|+|++++++||+|+.++   |++|+||+++++|++++||++|.|.++
T Consensus       154 D~sA~~~a~~l~A~~~~IwtDV~Gi~taDPr~V~~A~~i~~isy~Ea~ELa~~GAkVlHp~ti~pa~~~~Ipi~v~nTf~  233 (402)
T PRK06635        154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVELAKKYNVPLRVRSSFS  233 (402)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf             18999999860775899985356305158754677721572599999999976987567888999997498089985678


Q ss_pred             CCHHHHHHCCCCCCCEECCC
Q ss_conf             54799997799878246689
Q gi|254780777|r  223 PGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       223 ~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      |         + .||+|+++
T Consensus       234 p---------~-~GT~I~~~  243 (402)
T PRK06635        234 E---------E-PGTLITEE  243 (402)
T ss_pred             C---------C-CCEEEECC
T ss_conf             9---------8-97399538


No 23 
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of  the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species.  In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00  E-value=3.7e-37  Score=248.77  Aligned_cols=215  Identities=23%  Similarity=0.292  Sum_probs=172.5

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------HHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769909998236541-------023344203777754024678888
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-------FRGSQVVAENYLLCERSTVDSMGM   81 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   81 (242)
                      ||+|||||||.+       .++++++++.|++..++|+++++|+|+...       ..+.............++.+....
T Consensus         2 iV~KFGGtSv~~-------~~~i~~va~iI~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~l~s   74 (244)
T cd04260           2 IVQKFGGTSVST-------KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMS   74 (244)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             898118523799-------9999999999988987799889997999999975899999999997530389899999997


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---------HHHHHCCHHHHCCCCCCCCCCC---------CCCC
Q ss_conf             898999999999997618864113400100245665---------4321000011001111124655---------6777
Q gi|254780777|r   82 LSTVINALALDLALRKINVPTVILSSIFMPQVCEVF---------SCRNAVSYLSQGKVVIFSGGTG---------NAFL  143 (242)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~  143 (242)
                      .+.+.+..++...+...|++.......+........         ........++...++++.++.+         +.++
T Consensus        75 ~GE~lSa~lla~~L~~~Gi~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GFig~~~~G~~ttLGRg  154 (244)
T cd04260          75 CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRG  154 (244)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCEEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCEEECCCC
T ss_conf             43099999999999964998748658888353268777436765158999999863463574031024689966771898


Q ss_pred             CCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEEC
Q ss_conf             6215788888641644665147543512343223444444441159999855---9981409999999974996999518
Q gi|254780777|r  144 TTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSI  220 (242)
Q Consensus       144 ~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng  220 (242)
                      ++|++|+++|.+++|+.|.+||||||+||+||+.+|+|++|+++||+|++++   |++|+|+++++++++++||++|.|.
T Consensus       155 GSD~TAa~lA~~L~A~~~~IwtDV~Gv~taDPr~v~~A~~i~~lsy~EA~ELa~~GAkVlHp~ti~pa~~~~Ipi~Irnt  234 (244)
T cd04260         155 GSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRST  234 (244)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             46899999999609988999646871271799868887687731899999999779751689999999986981899707


Q ss_pred             CCCCHHHHHHCCCCCCCEEC
Q ss_conf             98547999977998782466
Q gi|254780777|r  221 HSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       221 ~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ++|          +.||+||
T Consensus       235 ~~~----------~~GT~Is  244 (244)
T cd04260         235 MSE----------NPGTLIT  244 (244)
T ss_pred             CCC----------CCCCEEC
T ss_conf             988----------7987749


No 24 
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00  E-value=1.1e-36  Score=245.91  Aligned_cols=219  Identities=21%  Similarity=0.279  Sum_probs=174.0

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-------HHHHHHHCCCCCCCCHHHHHH
Q ss_conf             2499999400368538877708999999999999999769909998236541-------023344203777754024678
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-------FRGSQVVAENYLLCERSTVDS   78 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-------~~~~~~~~~~~~~~~~~~~~~   78 (242)
                      ||.||.||||||+.+       .++++++++.|.+..++|+++++|+|+...       ..+.............++.+.
T Consensus         1 Mk~iV~KFGGtSv~~-------~~~i~~v~~ii~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~   73 (405)
T PRK08210          1 MKIIVQKFGGTSVST-------EERRKMVVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSDISKREQDL   73 (405)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             987988168502699-------9999999999987886699889997998989981149999999986502598788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHHCCHHHHCCCCCCCCCC---------CC
Q ss_conf             88889899999999999761886411340010024566---------5432100001100111112465---------56
Q gi|254780777|r   79 MGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEV---------FSCRNAVSYLSQGKVVIFSGGT---------GN  140 (242)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~  140 (242)
                      ....+.+....++...+...|.+.......+.......         .........++...++++.|+.         .+
T Consensus        74 l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~vv~GF~g~~~~g~~ttL  153 (405)
T PRK08210         74 LMSCGEIISSVVFSNMLNEAGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGATENGDITTL  153 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCCEEECCCHHHHHHHHHCCCEEEECCCEEECCCCCEEEE
T ss_conf             98775899999999999747998679774158478467545530001457999998745985996174654689956662


Q ss_pred             CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             7776215788888641644665147543512343223444444441159999855---9981409999999974996999
Q gi|254780777|r  141 AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIV  217 (242)
Q Consensus       141 ~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I  217 (242)
                      .+|++|++|+++|.+++|+.|.+||||||+||+||+.+|+|++|+++||+|++++   |++|+||+++++|++++||++|
T Consensus       154 GRGGSD~TA~~la~~l~A~~~~iwtDV~Gv~taDPr~v~~a~~i~~lsy~Ea~ELa~~GakVlhp~tv~pa~~~~Ipi~I  233 (405)
T PRK08210        154 GRGGSDTTAAALGVALKAEYIDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI  233 (405)
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf             58873279999998639988999856776563799827665111624999999999779863688999999973983999


Q ss_pred             EECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             518985479999779987824668
Q gi|254780777|r  218 FSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       218 ~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      .|.+++          ..||+|++
T Consensus       234 ~nT~~~----------~~GT~I~~  247 (405)
T PRK08210        234 RSTYSD----------SKGTLITS  247 (405)
T ss_pred             ECCCCC----------CCCCEEEC
T ss_conf             736899----------99867934


No 25 
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related  sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00  E-value=5.5e-36  Score=241.51  Aligned_cols=226  Identities=17%  Similarity=0.169  Sum_probs=166.8

Q ss_pred             EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf             99994003685388-777089999999999999997699099982365410233442037--777540246788888989
Q gi|254780777|r    9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV   85 (242)
Q Consensus         9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   85 (242)
                      ||||+|||+|++++ +..++.++|.+++++|+++.  |++++||||||++++........  ................+.
T Consensus         2 IVIKiGgs~lt~~~~~~~~~~~~i~~~~~~i~~~~--~~~iiiV~GgG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (252)
T cd04241           2 IILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHEAML   79 (252)
T ss_pred             EEEEECHHHEECCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99996578704897656511999999999999867--9988999895487699998713446874122888999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----HHHHHCCHHHHCCCCCCCCC----CCCCC--CCCHHHHHHHHHH
Q ss_conf             99999999997618864113400100245665----43210000110011111246----55677--7621578888864
Q gi|254780777|r   86 INALALDLALRKINVPTVILSSIFMPQVCEVF----SCRNAVSYLSQGKVVIFSGG----TGNAF--LTTDSAAALRASE  155 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~D~~a~~ia~~  155 (242)
                      ..+..+...+..++.++...+..+........    +......+++.+.+|++.+.    .+..+  .++|++|+++|.+
T Consensus        80 ~l~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~g~IPIin~~~v~~~~~~~~i~~~D~lAa~vA~~  159 (252)
T cd04241          80 ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKA  159 (252)
T ss_pred             HHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCEEECCHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999769963520404444431784103178999999987964696687652477742224373999999998


Q ss_pred             HCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH------------CCCCCCCHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             164466514754351234322344444444115999985------------59981409999999974996999518985
Q gi|254780777|r  156 IGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE------------KGLKVMDCASVVLARDCSIPIIVFSIHSP  223 (242)
Q Consensus       156 ~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~------------~G~~v~~~~A~~~a~~~gI~v~I~ng~~~  223 (242)
                      ++||.|+++|||||+||+||   ++++++++++..+..+            .|+|..|+.||+.|.++|++++|+||++|
T Consensus       160 l~Ad~LI~lTDVdGvy~~~p---~~a~~i~~i~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gi~v~I~~G~~~  236 (252)
T cd04241         160 LKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKP  236 (252)
T ss_pred             HCCCEEEEEECCCEEECCCC---CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             38786999956874646999---998386450732499998736877787627739999999999978994999899997


Q ss_pred             CHHHHHHCCCCCCCEE
Q ss_conf             4799997799878246
Q gi|254780777|r  224 GGIWGGLSGIGRSTII  239 (242)
Q Consensus       224 ~~i~~~l~Ge~~GT~I  239 (242)
                      ++|.+++.|+.+||+|
T Consensus       237 ~~i~~~l~g~~vGT~I  252 (252)
T cd04241         237 ENLYRALLGNFIGTRI  252 (252)
T ss_pred             CHHHHHHCCCCCCCCC
T ss_conf             6799997799998999


No 26 
>PRK06291 aspartate kinase; Provisional
Probab=100.00  E-value=9.2e-36  Score=240.15  Aligned_cols=219  Identities=21%  Similarity=0.240  Sum_probs=162.8

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC---CC--------------
Q ss_conf             9999940036853887770899999999999999976990999823654--1023344203---77--------------
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE---NY--------------   68 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~---~~--------------   68 (242)
                      |||.||||||+.+       .++++++++.|+...+++.++++|+|+..  +-++......   ..              
T Consensus         2 ~iV~KFGGTSva~-------~~~i~~v~~iI~~~~~~~~~~vVVvSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~~i~~   74 (466)
T PRK06291          2 RLVMKFGGTSVGD-------GERIRHVAKLVKKYREEGNEVVVVVSAMTGVTDRLLEIAEQALDVGDIAKVNDFIAELRE   74 (466)
T ss_pred             CEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             7899738423798-------999999999987677658989999679999789999999998747787889999999999


Q ss_pred             ----------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             ----------------------------------------7754024678888898999999999997618864113400
Q gi|254780777|r   69 ----------------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSI  108 (242)
Q Consensus        69 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (242)
                                                              .....+..+.....+...+..++...+...|++.......
T Consensus        75 ~h~~~~~~l~~~~~~~~e~~~~l~~~~~~l~~~l~~~~~~~~~s~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~  154 (466)
T PRK06291         75 RHEIAIEEAIEAPDIRVEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIPSLHLTGG  154 (466)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf             99999998502755689999999999999999876665530168177889986899999999999999679984998868


Q ss_pred             HHHHH-------------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             10024-------------5665432100001100111112465---------5677762157888886416446651475
Q gi|254780777|r  109 FMPQV-------------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus       109 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
                      +....             ............+....++++.|+.         .+.+|++|++|+++|.+++|+.+.+|||
T Consensus       155 ~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~vv~GFig~~~~G~~ttLGRGGSD~TAa~lA~~l~A~~~~IwTD  234 (466)
T PRK06291        155 EAGIITDDNFGNARPLPKTYERIKERLGPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTD  234 (466)
T ss_pred             HCEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             89177147876511553306889998877740483689736104889997787079961899999999578869999405


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             43512343223444444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      |||+||+||+.+|+|++|+++||+|+.++   |++|+||+|++++++++||++|.|.++|         +..||+|+++
T Consensus       235 V~Gi~taDPriV~~A~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~IPi~I~nt~~P---------~~~GT~I~~~  304 (466)
T PRK06291        235 VDGVMTADPRIVPEARTIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNP---------EFPGTLITSE  304 (466)
T ss_pred             CCCEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC---------CCCCEEEECC
T ss_conf             673471699878777543745999999999758764567789999980993899826898---------9997289647


No 27 
>KOG1154 consensus
Probab=100.00  E-value=4.3e-36  Score=242.19  Aligned_cols=239  Identities=17%  Similarity=0.180  Sum_probs=181.0

Q ss_pred             CCCCC-EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCC---------
Q ss_conf             68882-49999940036853887770899999999999999976990999823654102334420377775---------
Q gi|254780777|r    2 SDFPY-KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLC---------   71 (242)
Q Consensus         2 ~~~~~-KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~---------   71 (242)
                      +.+|+ ||||+|+|+++++++++.++...++..|++|++++++.|++|++|+|||................         
T Consensus         4 ~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~   83 (285)
T KOG1154           4 AFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQ   83 (285)
T ss_pred             HHCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf             01020049999814468877987540478999999999999856855999923525550777510203435678752675


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHCCHHHHCCCCCCCCCC-----CCCC
Q ss_conf             -4024678888898999999999997618864113400100245665432---100001100111112465-----5677
Q gi|254780777|r   72 -ERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR---NAVSYLSQGKVVIFSGGT-----GNAF  142 (242)
Q Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~  142 (242)
                       +..+..+....++..++.+|...|.++++...+......+...+..+++   .....+..+.+|++++.+     +.+|
T Consensus        84 ~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~~AQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~  163 (285)
T KOG1154          84 SELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPF  163 (285)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
T ss_conf             41146788887275218999999999837530035541643220899988999999998579244543788647763246


Q ss_pred             CC---CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-----------HHCCCCCCCHHHHHHH
Q ss_conf             76---215788888641644665147543512343223444444441159999-----------8559981409999999
Q gi|254780777|r  143 LT---TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQF-----------IEKGLKVMDCASVVLA  208 (242)
Q Consensus       143 ~~---~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~-----------l~~G~~v~~~~A~~~a  208 (242)
                      +|   ||++|+++|.+++||+|+++|||||+||.+| ..+.+++++..+..+-           .+.|+|-.|+.|+-+|
T Consensus       164 ~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PP-d~~~~~li~~~~~~~~~v~~tfG~~S~vGtGGM~tKv~AA~~A  242 (285)
T KOG1154         164 GDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPP-DADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNA  242 (285)
T ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             888765179999998742677999852561335999-8675334421046778876446666765767611558888777


Q ss_pred             HHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             974996999518985479999779987824668
Q gi|254780777|r  209 RDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       209 ~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      .+.|++++|.||..|.+|.+++.|..+||.++.
T Consensus       243 ~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~  275 (285)
T KOG1154         243 LNAGVSVIITNGDAPENITDIVEGKKVGTFFEQ  275 (285)
T ss_pred             HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             607914999479866778988645112014330


No 28 
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00  E-value=2.5e-35  Score=237.51  Aligned_cols=222  Identities=24%  Similarity=0.309  Sum_probs=170.1

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCC-----CCCCCCHHHHHHHHHHH
Q ss_conf             9994003685388777089999999999999997699099982365410233-44203-----77775402467888889
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAE-----NYLLCERSTVDSMGMLS   83 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~   83 (242)
                      |+|||||+|++       .+.+++++++|+.+++.|+++++||||+...... .....     ..........+.....+
T Consensus         1 ViK~GGssl~~-------~~~~~~~~~~i~~l~~~g~~~vvV~sa~~~it~~l~~~~~~~~~~~~~~~t~~~~~~i~~~g   73 (248)
T cd02115           1 VIKFGGSSVSS-------EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG   73 (248)
T ss_pred             CEEECHHHCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99889136069-------99999999999999978999899969844532999986535433136789989999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHHHHHCCHHHHCCCCCCCCC--------CCCCCCCCH
Q ss_conf             8999999999997618864113400100245---------66543210000110011111246--------556777621
Q gi|254780777|r   84 TVINALALDLALRKINVPTVILSSIFMPQVC---------EVFSCRNAVSYLSQGKVVIFSGG--------TGNAFLTTD  146 (242)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D  146 (242)
                      ......++...+...+.........+.....         ...........++.+.+|++.++        ..+.++++|
T Consensus        74 ~~~~~~~l~~~L~~~g~~a~~l~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~ipVi~g~~~~~~~~~~~l~~~~sD  153 (248)
T cd02115          74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD  153 (248)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCC
T ss_conf             99999999999985699816986553233136644432102268999998774167668136345556777633078878


Q ss_pred             HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             578888864164466514754351234322344444444115999985---59981409999999974996999518985
Q gi|254780777|r  147 SAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP  223 (242)
Q Consensus       147 ~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~  223 (242)
                      ++|+.+|.+++|+.+++||||||+||+||+.+|+|+++++++++|+.+   .|+|++|++|+..|.++|||++|.|+++|
T Consensus       154 ~~Aa~lA~~l~A~~lii~TDV~Gv~~~dp~~~~~a~~i~~ls~~ea~el~~~G~~v~~~~a~~~a~~~gi~v~I~n~~~~  233 (248)
T cd02115         154 STAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP  233 (248)
T ss_pred             HHHHHHHHHHCCCHHHHEECCCCCEECCCCCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999999949665531045786161899868867588653899999998559967489999999987997999139997


Q ss_pred             CHHHHHHCCCCCCCEE
Q ss_conf             4799997799878246
Q gi|254780777|r  224 GGIWGGLSGIGRSTII  239 (242)
Q Consensus       224 ~~i~~~l~Ge~~GT~I  239 (242)
                      +.+ .++.++..||+|
T Consensus       234 ~~l-elf~~~~~GTlI  248 (248)
T cd02115         234 GAL-ALFTPDGGGTLI  248 (248)
T ss_pred             CHH-HHCCCCCCCCCC
T ss_conf             533-411799996819


No 29 
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00  E-value=1.4e-34  Score=232.80  Aligned_cols=225  Identities=18%  Similarity=0.135  Sum_probs=155.3

Q ss_pred             CCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCC--HHHHHHHCCC-----------
Q ss_conf             68882499999400368538877708999999999999999-769909998236541--0233442037-----------
Q gi|254780777|r    2 SDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVY-AKGIEIGIVVGGGNI--FRGSQVVAEN-----------   67 (242)
Q Consensus         2 ~~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~-~~g~~vviV~sg~~~--~~~~~~~~~~-----------   67 (242)
                      +..-.|=||+||||||+.+       .++++++++.|.... +.|.++++|+|+.+.  -.+.......           
T Consensus         3 ~~~~~~wVV~KFGGTSVas-------~~~~~~Va~iI~~~~~~~g~rvvVVvSAm~gvTn~L~~la~~a~~~~~~l~~i~   75 (865)
T PRK08961          3 SPSADRWVVLKFGGTSVSR-------RHRWDTIAKLARKRLNETGGRVLVVVSALSGVTNELTAIADGAADSASRVAALE   75 (865)
T ss_pred             CCCCCCEEEECCCCCCCCC-------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             8888987998628466898-------999999999999999850998899985999863899999986421056788999


Q ss_pred             ---------CCC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             ---------777------------------------54024678888898999999999997618864113400100245
Q gi|254780777|r   68 ---------YLL------------------------CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC  114 (242)
Q Consensus        68 ---------~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
                               ...                        ...+..+.....+.+++..++...+...|++.......+.....
T Consensus        76 ~~h~~i~~eL~~~~~~~l~~~l~~L~~ll~~i~~~~~s~~~~d~ilS~GE~lSt~l~a~~L~~~Gi~a~~lDar~~l~t~  155 (865)
T PRK08961         76 QRHREFLAELELDAQAVLANRLAALQALLTDARAATRALDWQAEVLGQGELLSSRLGAAYLHASGLDMGWLDAREWLTAL  155 (865)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHCC
T ss_conf             99999999741005678999999999998666640578356345861737999999999999679981785689960014


Q ss_pred             ----------HH---HHHHH-----HCCHH-HHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             ----------66---54321-----00001-10011111246---------55677762157888886416446651475
Q gi|254780777|r  115 ----------EV---FSCRN-----AVSYL-SQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus       115 ----------~~---~~~~~-----~~~~~-~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
                                ..   .....     ..... ....++++.|+         +.+.+|++|++|+++|.+++|+.+.||||
T Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~vvVtqGFiG~~~~G~tTTLGRGGSDySAallAaaL~A~~veIWTD  235 (865)
T PRK08961        156 PPQPNQSEWSQRLSVSCQWQSDAGWRARFAAQPAQVLITQGFIARHADGGTAILGRGGSDTSAAYFGALLGAARVEIWTD  235 (865)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             67676430344433333330257889887505982799518335169998777079855899999999749988999858


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             43512343223444444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      |||+||+|||.+|+|++|+++||+|+.|+   |++|+||+++++|+++|||++|.|.++|         |..||+|+.+
T Consensus       236 VdGI~TaDPRiVp~Ar~I~~LSy~EA~ELA~fGAKVLHP~Ti~Pa~~~~IPv~VknT~~P---------e~~GT~I~~~  305 (865)
T PRK08961        236 VPGMFSANPKEVPDARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERP---------DLSGTSIDGN  305 (865)
T ss_pred             CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCCEEECC
T ss_conf             987866899878886587813899999999768752486667999976996798178998---------9997278489


No 30 
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00  E-value=4.3e-34  Score=229.86  Aligned_cols=216  Identities=21%  Similarity=0.255  Sum_probs=157.1

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC--HHHHHHHCC---C---------------
Q ss_conf             99999400368538877708999999999999999769909998236541--023344203---7---------------
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI--FRGSQVVAE---N---------------   67 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~--~~~~~~~~~---~---------------   67 (242)
                      |||+||||||+.+       .+.++++++.|.+.. +++++++|+|+...  -.+......   +               
T Consensus         1 riV~KFGGtSva~-------~~~i~~v~~II~~~~-~~~~~vVVVSA~~gvTn~L~~~~~~a~~~~~~~~~~~~~~i~~~   72 (298)
T cd04244           1 RLVMKFGGTSVGS-------AERIRHVADLVGTYA-EGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR   72 (298)
T ss_pred             CEEEEECCCCCCC-------HHHHHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9579849101189-------999999999985546-69998999779999889999999998526767899999999999


Q ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             -------------------------------------7775402467888889899999999999761886411340010
Q gi|254780777|r   68 -------------------------------------YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFM  110 (242)
Q Consensus        68 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (242)
                                                           ......+..+.....+...+..++...+...|++.......+.
T Consensus        73 h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~~e~s~~~~D~ils~GE~lSa~l~a~~L~~~Gi~a~~~d~~~~  152 (298)
T cd04244          73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA  152 (298)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHC
T ss_conf             99999985365768999999999999999999877653117868899999878899999999999967999799547987


Q ss_pred             HHHHH-------------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCC
Q ss_conf             02456-------------65432100001100111112465---------567776215788888641644665147543
Q gi|254780777|r  111 PQVCE-------------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVD  168 (242)
Q Consensus       111 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvd  168 (242)
                      .....             ..........+....++++.|+.         .+.++++|++|+++|.+++|+.+.|||||+
T Consensus       153 ~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDyTAailA~~l~A~~~~IwtDV~  232 (298)
T cd04244         153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD  232 (298)
T ss_pred             CEECCCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             55047876540033521999999988875059289993825558987665558994789999999972887899943988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             512343223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  169 GVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       169 Giyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      |+||+||+.+|+|++|+++||+|+.++   |++|+||++++++++++||++|.|.++|         +..||+||
T Consensus       233 Gi~taDPr~v~~a~~i~~lsy~EA~ELa~~GakVlHP~ti~p~~~~~IPi~Iknt~~p---------~~~GT~Is  298 (298)
T cd04244         233 GVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP---------EAPGTLIT  298 (298)
T ss_pred             CEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             3260799768887574732899999999679740599999999987996899389998---------99981559


No 31 
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00  E-value=8e-34  Score=228.18  Aligned_cols=216  Identities=18%  Similarity=0.133  Sum_probs=157.1

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---------------------
Q ss_conf             999940036853887770899999999999999976990999823654--102334420---------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---------------------   65 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---------------------   65 (242)
                      ||.|||||||.+       .+.++++++.|....+.+.++++|+|+..  +-.+.....                     
T Consensus         2 iV~KFGGTSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~   74 (295)
T cd04259           2 VVLKFGGTSVSS-------RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNL   74 (295)
T ss_pred             EEEEECHHCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             899768010587-------9999999999998874799989997999998368999999875364466999999999999


Q ss_pred             --------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH----
Q ss_conf             --------------------------37777540246788888989999999999976188641134001002456----
Q gi|254780777|r   66 --------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCE----  115 (242)
Q Consensus        66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  115 (242)
                                                ........+..+.....+.+.+..++...+...|+++......+......    
T Consensus        75 ~~~l~~~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~~~~  154 (295)
T cd04259          75 AEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGG  154 (295)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCCCCC
T ss_conf             99852147789999999999999876640479888999999998999999999999967998379648992000467675


Q ss_pred             -----------HHH--HHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             -----------654--32100001100111112465---------56777621578888864164466514754351234
Q gi|254780777|r  116 -----------VFS--CRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       116 -----------~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
                                 ...  .+......+...++++.|+.         .+.+|++|++|+++|.+++|+.+.|||||||+||+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~ta  234 (295)
T cd04259         155 ETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTA  234 (295)
T ss_pred             CCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             31123443565641549899875149859996784345699987772589730589999997499879999777767568


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             3223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||+.+|+|++|+++||+|+.++   |++|+||++++++.+.+||++|.|.++|         +..||+||
T Consensus       235 DPr~v~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~p---------~~~GT~Is  295 (295)
T cd04259         235 NPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT  295 (295)
T ss_pred             CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             98768888465733899999999679841689999999984991899289999---------99982669


No 32 
>PRK05925 aspartate kinase; Provisional
Probab=100.00  E-value=4.6e-34  Score=229.66  Aligned_cols=216  Identities=18%  Similarity=0.138  Sum_probs=150.4

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHC------------------
Q ss_conf             24999994003685388777089999999999999997699099982365--4102334420------------------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVA------------------   65 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~------------------   65 (242)
                      |+.||.||||||+.+       .++++++++.|.+    +.+.++|+|+.  .+-.+.....                  
T Consensus         1 M~~iV~KFGGtSv~~-------~e~i~~va~ii~~----~~~~~vVVSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~~h~   69 (440)
T PRK05925          1 MAPLVYKFGGTSLGT-------AESIRRVCDIICK----EKPSFVVVSAVAGVTDLLEEFCRVSKGKREQITEKIREKHE   69 (440)
T ss_pred             CCEEEEEECCCCCCC-------HHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             986999379623389-------9999999999971----59978999699997089999987620107899999999999


Q ss_pred             -----C-----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-------H---
Q ss_conf             -----3-----------------7777540246788888989999999999976188641134001002-------4---
Q gi|254780777|r   66 -----E-----------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ-------V---  113 (242)
Q Consensus        66 -----~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---  113 (242)
                           .                 ..........+.....+...+..++...+...|.+.......+...       .   
T Consensus        70 ~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ils~GE~~Sa~lla~~l~~~g~~a~~~da~~~i~td~~~~~a~~~  149 (440)
T PRK05925         70 EIAKELGIEFSLSPWWERLEHFEDKEEISSEDQARILAIGEDISASLICAYCCTNVLPLEFLEARQVILTDDQYLRATPD  149 (440)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCCC
T ss_conf             99987254212468999999876404488477888988729999999999999679982884303289826844330335


Q ss_pred             HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5665432100001100111112465---------5677762157888886416446651475435123432234444444
Q gi|254780777|r  114 CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRF  184 (242)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i  184 (242)
                      ............+....++++.|+.         .+.+|++|++|+++|.+++|+.|.|||||||+||+||+.+|+|++|
T Consensus       150 ~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~la~al~A~~~~IwTDV~Gv~taDPriV~~A~~i  229 (440)
T PRK05925        150 LALMQTNWHELNLQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLI  229 (440)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCC
T ss_conf             88888889987522796899616300189997776169973089999999617849998316573374799868888566


Q ss_pred             CCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             41159999855---9981409999999974996999518985479999779987824668
Q gi|254780777|r  185 DSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       185 ~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      +++||+|++++   |++|+||+++++|+++|||++|.|.++|         ++.||+|++
T Consensus       230 ~~lsy~Ea~ELa~~GAkVlHprtv~pa~~~~Ipi~i~nt~~p---------~~~GT~I~~  280 (440)
T PRK05925        230 PELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDV---------TKGGTWIYA  280 (440)
T ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEEE
T ss_conf             630899999999769640489999999983995899678999---------999538985


No 33 
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00  E-value=6.5e-34  Score=228.73  Aligned_cols=202  Identities=26%  Similarity=0.290  Sum_probs=155.4

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999940036853887770899999999999999976990999823654--102334420377775402467888889899
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
                      +|+|||||||.+       .+.++++++.|.+. .+++++++|+|+..  +-++..             .......+.+.
T Consensus         2 ~V~KFGGtSv~~-------~~~i~~v~~ii~~~-~~~~~~vVVvSA~~g~Td~L~~-------------~a~ils~GE~l   60 (227)
T cd04234           2 VVQKFGGTSVAS-------AERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIE-------------LALLLSFGERL   60 (227)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHH-------------HHHHHHHHHHH
T ss_conf             899678301799-------99999999999865-4389889997388432899999-------------99999299999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----------HHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHH
Q ss_conf             999999999761886411340010024566----------543210000110011111246---------5567776215
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCEV----------FSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDS  147 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~  147 (242)
                      +..++...+...|++.......+.......          ...+....+.+...++++.++         +.+.+|++|+
T Consensus        61 Sa~lla~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~Vv~GF~g~~~~G~~tTLGRGGSD~  140 (227)
T cd04234          61 SARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDY  140 (227)
T ss_pred             HHHHHHHHHHHCCCCEEEECHHHCEEECCCCCCCEEEHHHCHHHHHHHHHHCCCEEEECCEEEECCCCCEEEECCCCHHH
T ss_conf             99999999997899719964157206416876520645428999999997389679962604540588468838885678


Q ss_pred             HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             788888641644665147543512343223444444441159999855---99814099999999749969995189854
Q gi|254780777|r  148 AAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPG  224 (242)
Q Consensus       148 ~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~  224 (242)
                      +|+++|.+++|+.|.+||||||+||+||+.+|+|++++++||+|++++   |++|+|++++++|++++||++|.|.++| 
T Consensus       141 TA~~lA~~l~A~~~~I~TDVdGi~taDPr~v~~A~~i~~lsy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~i~nt~~p-  219 (227)
T cd04234         141 SAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP-  219 (227)
T ss_pred             HHHHHHHHHCCHHHEEEECCCEEECCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC-
T ss_conf             9999999818602222126870472799747886240441999999999779741699999999986983999289999-


Q ss_pred             HHHHHHCCCCCCCEEC
Q ss_conf             7999977998782466
Q gi|254780777|r  225 GIWGGLSGIGRSTIIS  240 (242)
Q Consensus       225 ~i~~~l~Ge~~GT~I~  240 (242)
                              +..||+|+
T Consensus       220 --------~~~GT~Is  227 (227)
T cd04234         220 --------EAPGTLIT  227 (227)
T ss_pred             --------CCCCEEEC
T ss_conf             --------99981769


No 34 
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=100.00  E-value=7.3e-34  Score=228.41  Aligned_cols=216  Identities=21%  Similarity=0.259  Sum_probs=153.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHC---CCC----------------
Q ss_conf             9994003685388777089999999999999997699099982365--4102334420---377----------------
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVA---ENY----------------   68 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~---~~~----------------   68 (242)
                      |+|||||||.+       .++++++++.|....+.+ ++++|+|+.  .+-++.....   .+.                
T Consensus         3 V~KFGGTSva~-------ae~i~~Va~II~~~~~~~-~vvVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~l~~i~~~h~~~   74 (817)
T PRK09436          3 VLKFGGTSLAN-------AERFLRVADIIESNARQE-QVAVVLSAPAKVTNHLVAMAEKAAGGQDYLPNLSDAERIFAEL   74 (817)
T ss_pred             EEEECCCCCCC-------HHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             88757156789-------999999999997534389-9899983999868999999998854886789999999999999


Q ss_pred             -------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             -------------------------------------7754024678888898999999999997618864113400100
Q gi|254780777|r   69 -------------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMP  111 (242)
Q Consensus        69 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (242)
                                                           ...+.+..+.....+.+.+..++...+...|++.......+..
T Consensus        75 ~~~l~~~~~~~~~~~l~~~l~~~~~~L~~~l~gi~ll~e~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lDar~~i  154 (817)
T PRK09436         75 LRGLAAALPGFDLAQLKAKLDQEFAELKDLLHGISLLGECPDKVNAAIISRGERLSIAIMSAVLEARGHDATVIDPRELL  154 (817)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHE
T ss_conf             99986433420257899999999999999987665530388577789975869999999999999689980997748907


Q ss_pred             HH----------HHHHHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCC
Q ss_conf             24----------566543210000110011111246---------55677762157888886416446651475435123
Q gi|254780777|r  112 QV----------CEVFSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYS  172 (242)
Q Consensus       112 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt  172 (242)
                      ..          ......+......+...++++.|+         +.+.+|++|++|+++|.+++|+.|.+||||||+||
T Consensus       155 ~td~~~~~a~vd~~~s~~~i~~~~~~~~~i~Vv~GFig~~~~G~~tTLGRGGSDyTAailAa~L~A~~~eIwTDVdGi~T  234 (817)
T PRK09436        155 LADGHYLESTVDIAESTRRIAASFIPADHVVLMPGFTAGNEKGELVTLGRNGSDYSAAVLAACLDADCCEIWTDVDGVYT  234 (817)
T ss_pred             EECCCCCCEEECHHHHHHHHHHHHCCCCCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEE
T ss_conf             83587776556667649999986345797899347112079998777069861789999999719866999846773270


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             43223444444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  173 ADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       173 ~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +||+.+|+|++|+++||+|++++   |++|+||++++++.+++||++|.|.++|         +..||+|+++
T Consensus       235 aDPr~V~~A~~I~~lSY~EA~ELA~fGAkVLHP~Ti~P~~~~~IPi~IkNTf~P---------~~~GT~I~~~  298 (817)
T PRK09436        235 ADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNP---------QAPGTLIGAE  298 (817)
T ss_pred             CCCCCCCCCEEEEEECHHHHHHHHHCCCCEECHHHHHHHHHCCCEEEEECCCCC---------CCCCEEEECC
T ss_conf             699877666575163699999998479950266778899874965999657788---------9997488425


No 35 
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00  E-value=5.8e-34  Score=229.06  Aligned_cols=220  Identities=19%  Similarity=0.124  Sum_probs=152.0

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHCC-----------------
Q ss_conf             824999994003685388777089999999999999997699099982365-41023344203-----------------
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG-NIFRGSQVVAE-----------------   66 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~-~~~~~~~~~~~-----------------   66 (242)
                      -|.|.|.||||||+.+       .++++++++.|.+..+. .++|+||..+ .+-++......                 
T Consensus         9 ~m~r~V~KFGGTSVa~-------ae~i~~Va~II~~~~~~-~~vVVVSA~ggvTd~Li~~~~~a~~~~~~~~~~~~~l~~   80 (810)
T PRK09466          9 AMGRQLHKFGGSSLAD-------AKCYRRVAGILAEYSQP-DDLVVVSAAGKTTNQLIKWLKLSQTDRLSAHEVLQTLRR   80 (810)
T ss_pred             CCCCEEECCCCCCCCC-------HHHHHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             3226897518665689-------99999999999735789-939998499998189999999875386057899999999


Q ss_pred             --------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             --------------------------------777754024678888898999999999997618864113400100245
Q gi|254780777|r   67 --------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC  114 (242)
Q Consensus        67 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
                                                      ..........+.....+.+.+..++...+...|++.............
T Consensus        81 ~h~~li~~ll~~~~~~~l~~~l~~~l~~l~~~l~~~~~~~~~d~ils~GE~lSa~Lla~~L~~~Gi~a~~ldar~~i~~d  160 (810)
T PRK09466         81 YQQDLIEGLLSAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLLAALLNQQGLAAAWLDARSFLRAE  160 (810)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEEC
T ss_conf             99999997506234699999999999999997515688678767733608999999999999679984895679905616


Q ss_pred             H--------HHHHHHHCCHHH--HCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCC
Q ss_conf             6--------654321000011--0011111246---------55677762157888886416446651475435123432
Q gi|254780777|r  115 E--------VFSCRNAVSYLS--QGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADP  175 (242)
Q Consensus       115 ~--------~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP  175 (242)
                      .        ..........+.  ...++++.|+         +.+.+|++|++|+++|.+++|+.|.|||||||+||+||
T Consensus       161 ~~~~~~vd~~~s~~~l~~~l~~~~~~i~VvtGFig~~~~G~~tTLGRGGSD~SAailAaaL~A~~~eIwTDVdGV~TADP  240 (810)
T PRK09466        161 RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALADVERVTIWSDVAGVYSADP  240 (810)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCEECCCC
T ss_conf             78653113666599999999736897699826677469997787058873069999999809977999735673153699


Q ss_pred             CCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             23444444441159999855---9981409999999974996999518985479999779987824668
Q gi|254780777|r  176 RVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       176 ~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      |.+|+|++|+++||+|++|+   |++|+||++++++++++||++|.|.++|         +..||+|++
T Consensus       241 riV~~A~~I~~iSY~EA~ELA~fGAkVLHPrti~Pa~~~~IPI~IknTf~P---------e~~GTlI~~  300 (810)
T PRK09466        241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYTP---------EQGSTRIER  300 (810)
T ss_pred             CCCCCCEEECEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCC---------CCCCEEEEE
T ss_conf             767565111234599999998469986576789999864974999954578---------999659975


No 36 
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA  and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00  E-value=3.5e-33  Score=224.24  Aligned_cols=214  Identities=24%  Similarity=0.263  Sum_probs=153.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---C------------------
Q ss_conf             99940036853887770899999999999999976990999823654--102334420---3------------------
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---E------------------   66 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---~------------------   66 (242)
                      |+||||||+.+       .+.++++++.|.+..++. ++++|+|+..  +-.+.....   .                  
T Consensus         3 V~KFGGtSv~~-------~~~i~~v~~iI~~~~~~~-~~vVVVSA~ggvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~~   74 (294)
T cd04257           3 VLKFGGTSLAN-------AERIRRVADIILNAAKQE-QVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLD   74 (294)
T ss_pred             EEEECCCCCCC-------HHHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99878111589-------999999999997532489-9899980999867999999999853862689999999999999


Q ss_pred             ---------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             ---------------------------------77775402467888889899999999999761886411340010024
Q gi|254780777|r   67 ---------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV  113 (242)
Q Consensus        67 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (242)
                                                       ..........+.....+.+.+..++...+...|++.......+....
T Consensus        75 ~i~~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~t  154 (294)
T cd04257          75 LITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVT  154 (294)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEC
T ss_conf             99985350457899999999999999999777641569889999999989899999999999977998299533362112


Q ss_pred             H----------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
Q ss_conf             5----------665432100001100111112465---------567776215788888641644665147543512343
Q gi|254780777|r  114 C----------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD  174 (242)
Q Consensus       114 ~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d  174 (242)
                      .          .....+......+...++++.|+.         .+.+|++|++|+++|.+++|+.+.|||||+|+||+|
T Consensus       155 ~~~~~~a~~~~~~t~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~TAa~ia~~L~A~~v~IwtDV~Gi~taD  234 (294)
T cd04257         155 DGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSAD  234 (294)
T ss_pred             CCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf             68877535668651999999864179789976952567889751348994889999999972997899942888505279


Q ss_pred             CCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  175 PRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       175 P~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      |+.+|+|++|+++||+|+.++   |++|+||+++++|++++||++|.|.++|         ++.||+|+
T Consensus       235 Pr~v~~a~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~vrnt~~p---------~~~GT~IS  294 (294)
T cd04257         235 PRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP---------EAPGTLIS  294 (294)
T ss_pred             CCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             9768898671604899999999679831599999999987993899389998---------99981519


No 37 
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase; InterPro: IPR005766    delta l-pyrroline-5-carboxylate synthetase contains a glutamate 5-kinase (ProB, 2.7.2.11 from EC) region followed by a gamma-glutamyl phosphate reductase (ProA, 1.2.1.41 from EC) region and catalyses the first and second steps in proline biosynthesis.; GO: 0003824 catalytic activity, 0006561 proline biosynthetic process.
Probab=100.00  E-value=1.1e-34  Score=233.41  Aligned_cols=237  Identities=19%  Similarity=0.254  Sum_probs=177.4

Q ss_pred             CCCC-CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHH----HHC----------
Q ss_conf             6888-249999940036853887770899999999999999976990999823654-102334----420----------
Q gi|254780777|r    2 SDFP-YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN-IFRGSQ----VVA----------   65 (242)
Q Consensus         2 ~~~~-~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~-~~~~~~----~~~----------   65 (242)
                      +.+| .||||+|+|++++|.+++.++...||..|++|+++|..+|+|+++|+||+. +++.+.    ...          
T Consensus         2 a~~K~~KRiVVK~G~AVVTr~d~~GLALGRL~si~EQl~~L~~~G~E~~LVtSGAV~~G~QRLR~~~L~~~S~~~~~~~~   81 (738)
T TIGR01092         2 AFLKDVKRIVVKVGTAVVTRGDGRGLALGRLGSIVEQLSELNSDGYEVILVTSGAVALGRQRLRYRKLVNSSFADLQKPQ   81 (738)
T ss_pred             CCCCCCCEEEEEECCEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf             64335547899825457877898401456789999999986028928999814412304046899999999999862420


Q ss_pred             ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHCCHHHHCCCCCCCC
Q ss_conf             ------3777754024678888898999999999997618864113400100245665432---1000011001111124
Q gi|254780777|r   66 ------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR---NAVSYLSQGKVVIFSG  136 (242)
Q Consensus        66 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  136 (242)
                            ......+...++   ..++..++.+|...|.++.+...+...+..+.+....+.+   .....+.+..+|+++.
T Consensus        82 qnqlke~ai~~L~~~ACA---a~GQsgLMAlYe~~F~Q~~~~aAQ~LVT~~dF~D~~~R~~L~~T~~~lL~~~vvPv~N~  158 (738)
T TIGR01092        82 QNQLKEMAIVELDGKACA---AVGQSGLMALYETMFTQLDITAAQLLVTDLDFRDEQFRRQLNETVKELLRMKVVPVLNE  158 (738)
T ss_pred             HHHHHHHHHHHCCCCHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf             233444212101331100---10413689999998658988888876315556686777779999999852303356517


Q ss_pred             CC-------------C---CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH---------
Q ss_conf             65-------------5---6777621578888864164466514754351234322344444444115999---------
Q gi|254780777|r  137 GT-------------G---NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQ---------  191 (242)
Q Consensus       137 ~~-------------~---~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e---------  191 (242)
                      .+             |   +.+.|||.+||++|-++.+|+|++++||+|+|+.+| -.+++|+|+.--.++         
T Consensus       159 NDAv~~~~~P~~D~~Ginvis~~DNDSLAA~LalElK~DLLIlLSDVeGLy~~PP-s~~~~KLI~~f~~~~~Q~~iTFG~  237 (738)
T TIGR01092       159 NDAVSTRKAPYSDSQGINVISFWDNDSLAALLALELKADLLILLSDVEGLYDGPP-SDDDSKLIDTFVKEKHQDEITFGE  237 (738)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCC-CCCCCCEEEEECCCCCCCCEECCC
T ss_conf             8754775477543466058998336479999998774404020103022348511-378762688730675456010365


Q ss_pred             --HHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCH----HHHHHCCCCCCCEECCC
Q ss_conf             --9855998140999999997499699951898547----99997799878246689
Q gi|254780777|r  192 --FIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGG----IWGGLSGIGRSTIISGE  242 (242)
Q Consensus       192 --~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~----i~~~l~Ge~~GT~I~~~  242 (242)
                        -+++|+|--|++||-+|...|+||+|+||..|.+    |.++++|+++||+++.+
T Consensus       238 KSrlG~GGM~AKVKAA~~A~~gG~~ViIa~G~~~~~sGhvI~~v~~G~~VGTlF~~~  294 (738)
T TIGR01092       238 KSRLGRGGMTAKVKAAVYAAYGGVPVIIASGTAAKNSGHVITKVVEGKKVGTLFHED  294 (738)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEECCCCEEECCEECC
T ss_conf             222368850278999999974891699816856533653322120573220010035


No 38 
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00  E-value=6.1e-33  Score=222.74  Aligned_cols=216  Identities=21%  Similarity=0.230  Sum_probs=151.4

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--------CHHHHHHHC---CC----------
Q ss_conf             999940036853887770899999999999999976990999823654--------102334420---37----------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--------IFRGSQVVA---EN----------   67 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--------~~~~~~~~~---~~----------   67 (242)
                      ||.||||||+.+         ...++++.|.....+++++++|+|+.+        +.++.....   ..          
T Consensus         3 iV~KFGGTSva~---------~~~~~~~~I~~~~~~~~~vvVVvSA~~~~~~~~g~T~~L~~~~~~a~~~~~~~~~~~~~   73 (306)
T cd04247           3 VVQKFGGTSVGK---------FPDNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQEKAFHDIVE   73 (306)
T ss_pred             EEEEECHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             999779140887---------99999999987762799889998899798775686999999999887445367999999


Q ss_pred             -------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             -------------------------------------------7775402467888889899999999999761886411
Q gi|254780777|r   68 -------------------------------------------YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVI  104 (242)
Q Consensus        68 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (242)
                                                                 ......+..+.....+.+.+..++...+...|++...
T Consensus        74 ~i~~~h~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~l~~~~~l~e~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~  153 (306)
T cd04247          74 DIRSDHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEY  153 (306)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999973087889999999999999999999988761448878888998212789999999999977999499


Q ss_pred             CCCCHHHHHH------H----HHHHHHHCCHH--HHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf             3400100245------6----65432100001--100111112465---------5677762157888886416446651
Q gi|254780777|r  105 LSSIFMPQVC------E----VFSCRNAVSYL--SQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILK  163 (242)
Q Consensus       105 ~~~~~~~~~~------~----~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i  163 (242)
                      ..........      .    ..........+  ....++++.|+.         .+.+|++|++|+++|.+++|+.+.|
T Consensus       154 lDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~tTLGRgGSDySAaila~~l~A~~v~I  233 (306)
T cd04247         154 VDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQI  233 (306)
T ss_pred             ECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             64899513667635455056899999999987741697489604125469998776068970799999999769778999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             47543512343223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  164 GTQVDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       164 ~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||||||+||+||+.+|+|++|+++||+|+.++   |++|+||++++++++.+||++|.|.++|         +..||+|+
T Consensus       234 wTDV~Gi~taDPr~V~~A~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~IPi~Irnt~~P---------~~~GT~I~  304 (306)
T cd04247         234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENP---------RGEGTVIY  304 (306)
T ss_pred             EECCCCCCCCCCCCCCCCEECCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCC---------CCCCCEEC
T ss_conf             977875454798757898365721899999999679731598999999987994898189998---------99973656


Q ss_pred             CC
Q ss_conf             89
Q gi|254780777|r  241 GE  242 (242)
Q Consensus       241 ~~  242 (242)
                      +|
T Consensus       305 ~d  306 (306)
T cd04247         305 PD  306 (306)
T ss_pred             CC
T ss_conf             89


No 39 
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00  E-value=1.2e-32  Score=221.01  Aligned_cols=213  Identities=22%  Similarity=0.219  Sum_probs=152.4

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHCC--------------------
Q ss_conf             999940036853887770899999999999999976990999823654--1023344203--------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVAE--------------------   66 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~~--------------------   66 (242)
                      +|+||||||+.+       .+.+.++++.|.+   ++.+.++|+|+..  +-++......                    
T Consensus         2 ~V~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~i~~~h   71 (292)
T cd04258           2 VVAKFGGTSVAD-------YAAMLRCAAIVKS---DASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAIH   71 (292)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             899578654488-------9999999999975---899809999489997499999999874477166899999999999


Q ss_pred             --------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             --------------------------------777754024678888898999999999997618864113400100245
Q gi|254780777|r   67 --------------------------------NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC  114 (242)
Q Consensus        67 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
                                                      .......+..+.....+...+..++...+...|++.......+.....
T Consensus        72 ~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~~da~~~i~td  151 (292)
T cd04258          72 FAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD  151 (292)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEEC
T ss_conf             99998724738899999999999999986554214688889999988888999999999999779985895657905746


Q ss_pred             ------------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             ------------665432100001100111112465---------56777621578888864164466514754351234
Q gi|254780777|r  115 ------------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       115 ------------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
                                  ...........++...++++.|+.         .+.+|++|++|+++|.+++|+.+.+||||||+||+
T Consensus       152 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRGGSDyTA~~la~~l~A~~v~iwtDV~Gi~ta  231 (292)
T cd04258         152 SRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT  231 (292)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             86653235388889999999865337989993580543799977753789616899999997699889999678878758


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             3223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||+.+|+|++|+++||+|+.++   |++|+|++|++++++++||++|.|.++|         ++.||+||
T Consensus       232 DPr~V~~A~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~I~nt~~p---------~~~GT~Is  292 (292)
T cd04258         232 DPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP---------EAGGTLIT  292 (292)
T ss_pred             CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             99878987674836999999999779731699999999986994899378998---------99982549


No 40 
>PRK09084 aspartate kinase III; Validated
Probab=100.00  E-value=8.1e-33  Score=221.98  Aligned_cols=215  Identities=22%  Similarity=0.225  Sum_probs=150.5

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHCCCC------------------
Q ss_conf             99994003685388777089999999999999997699099982365--4102334420377------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFRGSQVVAENY------------------   68 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~~~~~~~~~~------------------   68 (242)
                      ||.||||||+.+       .++++++++.|.+   +..+.++|+|+.  .+-.+........                  
T Consensus         2 vV~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~a~~~~~~~~~~~~~~~i~~~h~~   71 (447)
T PRK09084          2 VVAKFGGTSVAD-------FDAMNRSADIVLS---NPNTRLVVLSASSGVTNLLVALAEGAEPGDERFALLDEIRQIQYA   71 (447)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             899478556798-------9999999999972---799829999189996589999998754641389999999999999


Q ss_pred             ------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH----
Q ss_conf             ------------------------------7754024678888898999999999997618864113400100245----
Q gi|254780777|r   69 ------------------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC----  114 (242)
Q Consensus        69 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  114 (242)
                                                    ...+....+.....+...+..++...+...|++.......+.....    
T Consensus        72 ~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~D~lls~GE~lSa~lla~~L~~~G~~a~~ld~~~~i~td~~~~  151 (447)
T PRK09084         72 ILDRLRDPNVVREEIERLLENITVLAEAASLATSLALTDELVSHGELMSTLLFVEALRERGVQAEWFDVRKVMRTDDRFG  151 (447)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEECCCCC
T ss_conf             99873361879999999999999999863204774189999974679999999999996799838817789467668666


Q ss_pred             --------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             --------665432100001100111112465---------567776215788888641644665147543512343223
Q gi|254780777|r  115 --------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV  177 (242)
Q Consensus       115 --------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~  177 (242)
                              .....+.....+....++++.|+.         .+.+|++|++|+++|.+++|+.+.|||||||+||+|||.
T Consensus       152 ~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~TAa~la~~l~A~~~~IwtDV~Gi~taDPr~  231 (447)
T PRK09084        152 RAEPDVAAIAELAQEQLLPLLEEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRI  231 (447)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEECCCCC
T ss_conf             51447899999999998774369868950045766999777617996068999999966984999961778336069876


Q ss_pred             CCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             444444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  178 HASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       178 ~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +|+|++|+++||+|+.++   |++|+||+|++++.++|||++|.|.++|         +..||+|+++
T Consensus       232 V~~A~~i~~lsy~Ea~ELa~~GAkVlHp~av~pa~~~~IPi~I~nt~~P---------~~~GT~I~~~  290 (447)
T PRK09084        232 VPAARRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDP---------EAGGTWITND  290 (447)
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCEEEEECCCCC---------CCCCEEEECC
T ss_conf             7665203634899999999777100175889999981975999557898---------9997089426


No 41 
>PRK08373 aspartate kinase; Validated
Probab=100.00  E-value=7.6e-33  Score=222.16  Aligned_cols=215  Identities=17%  Similarity=0.187  Sum_probs=149.6

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC-------------------
Q ss_conf             49999940036853887770899999999999999976990999823654--102334420-------------------
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA-------------------   65 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~-------------------   65 (242)
                      |-+|+||||||+.+.         ++++++.|+...+ +.++++|+|+..  +-.+.....                   
T Consensus         4 km~V~KFGGTSV~~a---------~~~v~~iv~~~~~-~~~vvVVVSAm~gvTd~Li~~a~~~~~~~~~I~~~h~~~a~~   73 (359)
T PRK08373          4 KMIVVKFGGSSVRYD---------FEEAVELVKSLSE-EKEVIVVVSALKGVTDCLLKYANTDKSAALEIEKIHEEFAKE   73 (359)
T ss_pred             CCEEEEECHHCCHHH---------HHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             879984281013328---------9999999998752-898899967999977999999976577789999999999998


Q ss_pred             ----------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH------------HHH
Q ss_conf             ----------------3777754024678888898999999999997618864113400100245------------665
Q gi|254780777|r   66 ----------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC------------EVF  117 (242)
Q Consensus        66 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  117 (242)
                                      ......+....+.....+.+.+..++...+...|++.......+.....            ...
T Consensus        74 l~~~~~~l~~~l~~l~~~~~~~~~~~~D~Ils~GE~lSa~Lla~~L~~~Gi~a~~lda~~ii~td~~~~~a~vd~~~s~~  153 (359)
T PRK08373         74 HGIDTEILSPYLKELFNRPDFPSEALRDYILSIGERLSAVIFAEGLKILGINGKVVDPWDILEAKGNFGNAFIDIKKSKR  153 (359)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEEEECCCCCCEEECHHHHHH
T ss_conf             36667788999999873113884576666776739999999999999779980997548958853876757754787676


Q ss_pred             HHHHHCCHHHHCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             432100001100111112465--------567776215788888641644665147543512343223444444441159
Q gi|254780777|r  118 SCRNAVSYLSQGKVVIFSGGT--------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY  189 (242)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~  189 (242)
                      ........++...++++.|+.        .+.+|++|++|+++|.+++|+.+.|||||||+||+|||.+|+|++|+++||
T Consensus       154 ~~~~l~~~l~~~~i~Vv~GFiG~~~G~~TTLGRGGSDyTAailA~~L~A~~v~IwTDVdGI~TADPriV~~Ar~I~~lSY  233 (359)
T PRK08373        154 NAKVVYEALERGKIPVVPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYVSY  233 (359)
T ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEECCCCCH
T ss_conf             69999987327958993674670499264306997168999999974997899975898516089987898748882189


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  190 NQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       190 ~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +|++++   |++|+||+++++|++ +||++|.|.++|          ..||+||.|
T Consensus       234 ~EA~ELA~~GAKVLHPrti~Pakk-~IPi~v~nT~~~----------~~GTLIt~e  278 (359)
T PRK08373        234 DEIKIAAKLGMKALHWKAIDLVKG-YIPIIFGRTRDW----------RMGTLISNE  278 (359)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHH-CCCEEEECCCCC----------CCCEEEECC
T ss_conf             999999977974168888999980-995799267978----------896478526


No 42 
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA  and  AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00  E-value=1.9e-32  Score=219.65  Aligned_cols=214  Identities=23%  Similarity=0.250  Sum_probs=153.8

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHHHC---------------------
Q ss_conf             999940036853887770899999999999999976990999823654--102334420---------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN--IFRGSQVVA---------------------   65 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~--~~~~~~~~~---------------------   65 (242)
                      .|+|||||||.+       .+.++++++.|...  .+.++++|+|+..  +-.+.....                     
T Consensus         2 kV~KFGGtSv~~-------~~~i~~v~~iI~~~--~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~   72 (293)
T cd04243           2 KVLKFGGTSVAS-------AERIRRVADIIKSR--ASSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERHL   72 (293)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             899878123699-------99999999999837--798959998199886899999999884377578999999999999


Q ss_pred             ---------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             ---------------------------------37777540246788888989999999999976188641134001002
Q gi|254780777|r   66 ---------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ  112 (242)
Q Consensus        66 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (242)
                                                       ........+..+.....+...+..++...+...|++.......+...
T Consensus        73 ~i~~~L~~~~~~~~~~~~i~~~~~~L~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~  152 (293)
T cd04243          73 DLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLL  152 (293)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEE
T ss_conf             99998527154799999999999999999876542257988999999988989999999999997899809975478420


Q ss_pred             HH----------HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             45----------665432100001100111112465---------56777621578888864164466514754351234
Q gi|254780777|r  113 VC----------EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       113 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
                      ..          .....+......+...++++.|+.         .+.+|++|++|+++|.+++|+.+.+||||+|+||+
T Consensus       153 td~~~~~a~~~~~~s~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~sAaila~~l~A~~v~IwtDV~Gi~ta  232 (293)
T cd04243         153 TDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTA  232 (293)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEC
T ss_conf             26887531007764199999986338959997496612799977872798289999999995699889998378840708


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             3223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||+.+|+|++|+++||+|+.++   |++|+||++++++++++||++|.|.++|         +..||+||
T Consensus       233 DPr~v~~a~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~Ipi~i~nt~~p---------~~~GT~Is  293 (293)
T cd04243         233 DPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNP---------EAPGTLIS  293 (293)
T ss_pred             CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC---------CCCCEEEC
T ss_conf             99878887564810899999999779620599999999986994899379998---------99982659


No 43 
>PRK09034 aspartate kinase; Reviewed
Probab=100.00  E-value=2.9e-33  Score=224.76  Aligned_cols=213  Identities=18%  Similarity=0.181  Sum_probs=152.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CHHHHHHHC---------------
Q ss_conf             99940036853887770899999999999999976990999823654---------102334420---------------
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN---------IFRGSQVVA---------------   65 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~---------~~~~~~~~~---------------   65 (242)
                      |+||||||+.+       .+.++++++.|..  +..+.+ +|+|+..         +-.+.....               
T Consensus         3 V~KFGGtSv~~-------~~~i~~v~~ii~~--~~~~~v-VVVSA~G~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~~i   72 (450)
T PRK09034          3 VVKFGGSSLAS-------AEQFKKVLNIVKS--DPERKI-VVVSAPGKRFKEDTKVTDLLILYAEHVLNGEDYDDIFEAI   72 (450)
T ss_pred             EEEECCCCCCC-------HHHHHHHHHHHHC--CCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99878313899-------9999999999962--789839-9990798876775552699999999986487589999999


Q ss_pred             -----------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             -----------------------------377775402467888889899999999999761886411340010024566
Q gi|254780777|r   66 -----------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEV  116 (242)
Q Consensus        66 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (242)
                                                   ........+..+.....+.+.+..++...+...|++.......+.......
T Consensus        73 ~~~h~~i~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~~d~~~~~~~~~~  152 (450)
T PRK09034         73 IARYAEIADELGLKDDILEKIAEILEHLANLDKEENGYLLDAFKARGEDLNAKLIAAYLNYEGIDARYVSPKEAGIIVTD  152 (450)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHEEEEECC
T ss_conf             99999999873566779999999999998602457467787885188999999999999968997399873450278526


Q ss_pred             ---------HHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             ---------543210000110011111246---------55677762157888886416446651475435123432234
Q gi|254780777|r  117 ---------FSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVH  178 (242)
Q Consensus       117 ---------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~  178 (242)
                               .........+....++++.|+         +.+.+|++|++|+++|.+++|+.+.+||||||+||+|||.+
T Consensus       153 ~~~~a~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~tTLGRGGSD~TAa~la~~l~A~~~~IwTDVdGi~taDPr~V  232 (450)
T PRK09034        153 EPGGAQILPESYDKLKKLRDSDEKLVIPGFFGVTPDGQIKTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPNIV  232 (450)
T ss_pred             CCCCCEECHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCC
T ss_conf             77761773741999998871798799832788469997776168834899999999719988999854673160698767


Q ss_pred             CCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             44444441159999855---9981409999999974996999518985479999779987824668
Q gi|254780777|r  179 ASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       179 ~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      |+|++|+++||+|+.++   |++|+||+++++++++|||++|.|.++|         +..||+|++
T Consensus       233 ~~A~~i~~lsy~EA~ELa~~GAkVlHP~ti~p~~~~~IPi~I~nt~~P---------~~~GT~I~~  289 (450)
T PRK09034        233 KNPKPIEEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNP---------EDPGTLIVH  289 (450)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCEEEEEEECCCC---------CCCCEEEEE
T ss_conf             876620527899999999758754571314521306548999727999---------999608962


No 44 
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00  E-value=1.8e-32  Score=219.80  Aligned_cols=214  Identities=19%  Similarity=0.193  Sum_probs=152.1

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CHHHHHHHC-----------
Q ss_conf             249999940036853887770899999999999999976990999823654---------102334420-----------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN---------IFRGSQVVA-----------   65 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~---------~~~~~~~~~-----------   65 (242)
                      ||  |+||||||+.+       .+.++++++.|..  +..+. ++|+|+..         +..+.....           
T Consensus         1 Mk--V~KFGGtSv~~-------~~~i~~v~~Ii~~--~~~~~-vVVVSA~g~~tn~~~gvTd~L~~~a~~~~~~~~~~~~   68 (288)
T cd04245           1 MK--VVKFGGSSLAS-------AEQFQKVKAIVKA--DPERK-IVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESI   68 (288)
T ss_pred             CE--EEEECCCCCCC-------HHHHHHHHHHHHC--CCCCE-EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             98--99888113589-------9999999999971--78980-9999089888675214799999999987568459999


Q ss_pred             ---------------------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             ---------------------------------37777540246788888989999999999976188641134001002
Q gi|254780777|r   66 ---------------------------------ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQ  112 (242)
Q Consensus        66 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (242)
                                                       ........+..+.....+.+.+..++...+...|++.......+...
T Consensus        69 ~~~i~~~h~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~d~~i  148 (288)
T cd04245          69 FEAIVDRYAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGL  148 (288)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE
T ss_conf             99999999999987466477999999999999871446855777687309999999999999996899839950000217


Q ss_pred             H---------HHHHHHHHHCCHHHHCCCCCCCCC---------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
Q ss_conf             4---------566543210000110011111246---------5567776215788888641644665147543512343
Q gi|254780777|r  113 V---------CEVFSCRNAVSYLSQGKVVIFSGG---------TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD  174 (242)
Q Consensus       113 ~---------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d  174 (242)
                      .         .............+...++++.|+         +.+.++++|++|+++|.+++|+.+.+|||||||||+|
T Consensus       149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSDySAaiia~~l~A~~v~iwtDV~Gi~taD  228 (288)
T cd04245         149 VVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAAN  228 (288)
T ss_pred             EECCCCCCCEECHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECC
T ss_conf             84477653033275699999887059838982577753899764328983899999999975898899954798037379


Q ss_pred             CCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             223444444441159999855---998140999999997499699951898547999977998782466
Q gi|254780777|r  175 PRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       175 P~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||.+|+|++++.+||+|+.++   |++|+||++++++.+.+||++|.|.++|         +..||+|-
T Consensus       229 Pr~V~~A~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~Ipi~irnt~~p---------~~~GT~I~  288 (288)
T cd04245         229 PRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHP---------EAPGTLIV  288 (288)
T ss_pred             CCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC---------CCCCCEEC
T ss_conf             9857798687735999999999679851588999999985980899378999---------99985779


No 45 
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.98  E-value=1.3e-31  Score=214.64  Aligned_cols=231  Identities=20%  Similarity=0.205  Sum_probs=178.3

Q ss_pred             EEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf             99994003685388-777089999999999999997699099982365410233442037--777540246788888989
Q gi|254780777|r    9 VLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN--YLLCERSTVDSMGMLSTV   85 (242)
Q Consensus         9 IViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   85 (242)
                      +|+|||||+||+++ ++++++++++++|.+|++  ..-..+++|||||+|+|........  ......+...+....++.
T Consensus         3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~am~   80 (252)
T COG1608           3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLAML   80 (252)
T ss_pred             EEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             899955616525887321118999999999845--995438999458665678899707654446667434399999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHH---HHHHHHHHHCCHHHHCCCCCCCCC------CCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999761886411340010024---566543210000110011111246------5567776215788888641
Q gi|254780777|r   86 INALALDLALRKINVPTVILSSIFMPQV---CEVFSCRNAVSYLSQGKVVIFSGG------TGNAFLTTDSAAALRASEI  156 (242)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~a~~ia~~~  156 (242)
                      .++......+...|....+..+.+....   ............++.+.+|+..++      .+....+.|..+..+|.++
T Consensus        81 ~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l  160 (252)
T COG1608          81 ELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKEL  160 (252)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEECCHHHHHHHHHH
T ss_conf             99999999998669853222686403317703220299999998769876233346874898548985118999999974


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf             644665147543512343223444444441159999855-------9981409999999974996999518985479999
Q gi|254780777|r  157 GADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGG  229 (242)
Q Consensus       157 ~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~  229 (242)
                      .+|+++++|||||||+.||+++|+++.++++.....++.       |+|.-|++++....+++-++||+||++|+||.++
T Consensus       161 ~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~  240 (252)
T COG1608         161 KPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRA  240 (252)
T ss_pred             CCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf             98779998457823568987486620001443234306867621313399999999998735863899878777789999


Q ss_pred             HCCCCCCCEECC
Q ss_conf             779987824668
Q gi|254780777|r  230 LSGIGRSTIISG  241 (242)
Q Consensus       230 l~Ge~~GT~I~~  241 (242)
                      |+|+.+||.|++
T Consensus       241 l~G~~vGT~I~~  252 (252)
T COG1608         241 LRGENVGTRIDG  252 (252)
T ss_pred             HCCCCCCEEECC
T ss_conf             658877548469


No 46 
>pfam00696 AA_kinase Amino acid kinase family. This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Probab=99.97  E-value=9.4e-31  Score=209.26  Aligned_cols=206  Identities=25%  Similarity=0.263  Sum_probs=144.4

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHH----HH
Q ss_conf             49999940036853887770899999999999999976990999823654102334420377775402467888----88
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMG----ML   82 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   82 (242)
                      ||||+|||||+|++       .+.+++++++|+++.+.|++++||||||.+.+.+............+......    ..
T Consensus         1 k~iViK~GGs~l~~-------~~~i~~~~~~I~~l~~~g~~vvvV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (230)
T pfam00696         1 KRIVIKLGGSSLTD-------EDAIKRIAEEIALLSELGIKVVVVSGGGGFTDKLLAAYGIAEKIGLRVTAGATGLIIEA   73 (230)
T ss_pred             CEEEEEECHHHCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             90999958567789-------89999999999999968994999979858887999981777657515669999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHH
Q ss_conf             98999999999997618864113400100245---665432100001100111112465---------567776215788
Q gi|254780777|r   83 STVINALALDLALRKINVPTVILSSIFMPQVC---EVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAA  150 (242)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~  150 (242)
                      ........+...+...+.+.............   ...........++...+|++.++.         +..++++|++|+
T Consensus        74 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVi~g~~~~~~~~~~~~l~~~~sD~~Aa  153 (230)
T pfam00696        74 ALAGLLDIVVSAGERLGARAVALLLSDGGIGAVRLDANDTEAIKELLEEGVVPVITGFGGENDTGETTTLGRGSSDTLAA  153 (230)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCHHHHH
T ss_conf             99999999999999829730132565134551688452599999999769925524764247988723134877108899


Q ss_pred             HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-------CCCC-CCHHHHHHHHHCCCCEEEEE
Q ss_conf             888641644665147543512343223444444441159999855-------9981-40999999997499699951
Q gi|254780777|r  151 LRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEK-------GLKV-MDCASVVLARDCSIPIIVFS  219 (242)
Q Consensus       151 ~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~-------G~~v-~~~~A~~~a~~~gI~v~I~n  219 (242)
                      ++|.+++|+.|+++|||+||||+||+.+|+|++|++++++|+.++       |+|. +++.|.+++++.++|++|+|
T Consensus       154 ~lA~~l~A~~lii~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~i~v~I~n  230 (230)
T pfam00696       154 LLAEALGADKLIILTDVDGVYTADPRKVPDAKLIPELSYDEAEELLAAGDGTGGMKVKDPAALKAARRGGIPVVIVN  230 (230)
T ss_pred             HHHHHCCCCEEEEEECCCCEECCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99985598678986157813637998799873855767999998876597849969999999999997898699949


No 47 
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97  E-value=2.1e-29  Score=200.88  Aligned_cols=221  Identities=19%  Similarity=0.207  Sum_probs=166.7

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99994003685388777089999999999999997699099982365410233442037777540246788888989999
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINA   88 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (242)
                      -|+||||.|++|..     .+.+-.+.++|.+++++ |+++|++|||..+|.....+.... .+.-.+...+......+.
T Consensus        33 ~VvKIGGqsi~DrG-----~~av~Plv~Ei~~~~~~-hk~li~TGgG~RaRHiy~igldLg-mPtGvLa~L~~~vs~QNa  105 (262)
T cd04255          33 NVVKIGGQSIIDRG-----AEAVLPLVEEIVALRPE-HKLLILTGGGTRARHVYSIGLDLG-MPTGVLAKLGASVSEQNA  105 (262)
T ss_pred             EEEEECCEEEECCC-----HHHHHHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf             28998780300373-----34243289999975131-528998367500334312341479-961156776422446479


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----HHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf             999999976188641134001002456654-----321000011001111124655677762157888886416446651
Q gi|254780777|r   89 LALDLALRKINVPTVILSSIFMPQVCEVFS-----CRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILK  163 (242)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i  163 (242)
                      ..+...+..+|....-.....  .......     ...-.+....+..+.  +..-++...+|+.|.++|..++|+.|++
T Consensus       106 ~ml~~LLa~~G~~~i~~~~~~--~l~~~l~~~~~~v~~g~PPY~~~e~p~--~~g~IPphRTDtGAfLlAe~iGa~~li~  181 (262)
T cd04255         106 EMLATLLAKHGGSKVGHGDLL--QLPTFLKAGRAPVISGMPPYGLWEHPA--EEGRIPPHRTDVGAFLLAEVIGARNLIF  181 (262)
T ss_pred             HHHHHHHCCCCCEEECCCCHH--HHHHHHHCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf             999998431387025787789--999998658710442799975454786--5687899754389999999848753799


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC--CCCCCHHHHHHHHH--CCCCEEEEECCCCCHHHHHHCCCCCCCEE
Q ss_conf             475435123432234444444411599998559--98140999999997--49969995189854799997799878246
Q gi|254780777|r  164 GTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG--LKVMDCASVVLARD--CSIPIIVFSIHSPGGIWGGLSGIGRSTII  239 (242)
Q Consensus       164 ~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~G--~~v~~~~A~~~a~~--~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I  239 (242)
                      .+||||+||+||+++++|++++++|++|++.++  -++++..+.++.+.  +--++.|+||.+|+||.++++||++||+|
T Consensus       182 vkdVDGvYtaDPk~~~~A~~i~~iS~~Ell~~~L~dlv~er~~l~ll~~a~~i~~VqVvNgl~PGnitrAL~GEhVGTiI  261 (262)
T cd04255         182 VKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII  261 (262)
T ss_pred             EECCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCEE
T ss_conf             96577776799999976534253779999863476430059999999861135517998078853799987268664100


Q ss_pred             C
Q ss_conf             6
Q gi|254780777|r  240 S  240 (242)
Q Consensus       240 ~  240 (242)
                      +
T Consensus       262 r  262 (262)
T cd04255         262 R  262 (262)
T ss_pred             C
T ss_conf             9


No 48 
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes'  of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.95  E-value=8.8e-28  Score=190.93  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCC
Q ss_conf             5567776215788888641644665147543512343223444--444441159999855---99814099999999749
Q gi|254780777|r  138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS--STRFDSLTYNQFIEK---GLKVMDCASVVLARDCS  212 (242)
Q Consensus       138 ~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~--ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~g  212 (242)
                      +.+.+|++|++|+++|.+++|+.+.+||||+ +||+|||.+|+  |++|+++||+|+.|+   |++|+||++++++.+++
T Consensus       207 tTLGRgGSDySAailA~~l~A~~~~IWtDV~-v~tADPr~V~~~~a~~i~~lSy~EA~ELayfGAkVlHP~Ti~P~~~~~  285 (304)
T cd04248         207 REFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG  285 (304)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf             6507997178999999976999899985066-616897957877663606479999999997797215989999999869


Q ss_pred             CCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             9699951898547999977998782466
Q gi|254780777|r  213 IPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       213 I~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      ||++|.|.++|         +..||+||
T Consensus       286 IPi~IkNt~~P---------~~~GT~Is  304 (304)
T cd04248         286 IPLRVKNTFEP---------DHPGTLIT  304 (304)
T ss_pred             CCEEEECCCCC---------CCCCCEEC
T ss_conf             98898068998---------99983439


No 49 
>PRK09181 aspartate kinase; Validated
Probab=99.95  E-value=1.9e-27  Score=188.84  Aligned_cols=95  Identities=17%  Similarity=0.178  Sum_probs=88.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCC
Q ss_conf             55677762157888886416446651475435123432234--44444441159999855---99814099999999749
Q gi|254780777|r  138 TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVH--ASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCS  212 (242)
Q Consensus       138 ~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~--~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~g  212 (242)
                      +.+.+|++|++|+++|.+++|+.+.+||||+ +||+||+..  +++++|+++||+|+.++   |++|+||++++++++++
T Consensus       214 ~tlgRggSD~ta~~ia~~l~a~~~~i~~dv~-v~taDP~~v~~~~~~~i~~~sy~ea~ela~~Ga~vlhp~~~~p~~~~~  292 (476)
T PRK09181        214 RTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAG  292 (476)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCEEEEEEECC-EECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             4358884599999999984898999996365-312798843654344735268999999986598640806789999759


Q ss_pred             CCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             969995189854799997799878246689
Q gi|254780777|r  213 IPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       213 I~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      ||++|.|.++|         +..||+|+++
T Consensus       293 Ipi~v~nt~~p---------~~~GT~I~~~  313 (476)
T PRK09181        293 IPLRIKNTFEP---------EHPGTLITKD  313 (476)
T ss_pred             CCEEEEECCCC---------CCCCEEEECC
T ss_conf             96899706899---------9997599468


No 50 
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.90  E-value=1.2e-22  Score=159.35  Aligned_cols=219  Identities=18%  Similarity=0.193  Sum_probs=138.9

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHCCCCC------CCCHHHHHHHH
Q ss_conf             99999400368538877708999999999999999769909998236541023-344203777------75402467888
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVAENYL------LCERSTVDSMG   80 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~~~~~------~~~~~~~~~~~   80 (242)
                      .|||||||++|+++       +.+++++++|+.+++.|.+++||||||..... ....+....      .-+..... ..
T Consensus         1 TiVIkiGG~~l~~~-------~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvT~~~~l~-~~   72 (262)
T PRK00942          1 TIVIKYGGNAMTDE-------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDKETME-VV   72 (262)
T ss_pred             CEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-HH
T ss_conf             99999885884498-------79999999999999889919999388299999999869972304775466189999-99


Q ss_pred             HHHHH-HHHHHHHHHHHHHCCCCCCCCCC--------HHHHH-------------HHHHHHHHHCCHHHHCCCCCCCC--
Q ss_conf             88989-99999999997618864113400--------10024-------------56654321000011001111124--
Q gi|254780777|r   81 MLSTV-INALALDLALRKINVPTVILSSI--------FMPQV-------------CEVFSCRNAVSYLSQGKVVIFSG--  136 (242)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~--  136 (242)
                      ..... .....+...+...+......+..        .....             ....+.......++.+.+|+...  
T Consensus        73 ~~~l~g~i~~~l~~~l~~~g~~avglsg~d~~~v~a~~~~~~~~~~~~d~g~vG~v~~v~~~~I~~ll~~g~IpVispig  152 (262)
T PRK00942         73 EMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLVTARKLDENGKEKIIDLGYVGEVEEVNPALLETLLEAGYIPVISPIG  152 (262)
T ss_pred             HHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECCCC
T ss_conf             99981719999999998558742314566787589998644566545667620461666689999998479757962641


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHH
Q ss_conf             ---6556777621578888864164466514754351234322344444444115999985-------599814099999
Q gi|254780777|r  137 ---GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVV  206 (242)
Q Consensus       137 ---~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~  206 (242)
                         ..+....+.|.+|+.+|..++||.|+++||++|+|+.      +++++++++..|+..       .|+|..|+.|+.
T Consensus       153 ~~~~G~~~ninaD~~Aa~iA~~l~AdkLi~ltdv~Gv~~~------~g~~i~~i~~~e~~~l~~~~~~~ggM~pKl~aa~  226 (262)
T PRK00942        153 VGEDGETYNVNADTAAGAIAAALGAEKLILLTDVPGVLDD------KGSLISELTAEEAEELIEDGVITGGMIPKVEAAL  226 (262)
T ss_pred             CCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             8898878557799999999998467949999588761578------8751431069999999865976896099999999


Q ss_pred             HHHHCCCC-EEEEECCCCCH-HHHHHCCCCCCCEEC
Q ss_conf             99974996-99951898547-999977998782466
Q gi|254780777|r  207 LARDCSIP-IIVFSIHSPGG-IWGGLSGIGRSTIIS  240 (242)
Q Consensus       207 ~a~~~gI~-v~I~ng~~~~~-i~~~l~Ge~~GT~I~  240 (242)
                      .|.++|++ ++|.||+.|+. +...+.++..||+|.
T Consensus       227 ~a~~~Gv~rv~I~~g~~~~~ll~elft~~G~GT~i~  262 (262)
T PRK00942        227 EAARSGVRSVHIIDGRVPHSLLLELFTDEGIGTMIV  262 (262)
T ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCEEC
T ss_conf             999819998999369998779999817999852569


No 51 
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative; InterPro: IPR011819    This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from Escherichia coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~100 amino acids in between..
Probab=99.90  E-value=3.7e-23  Score=162.42  Aligned_cols=213  Identities=15%  Similarity=0.211  Sum_probs=158.3

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHH---------------------------
Q ss_conf             99994003685388777089999999999999997699099982365--4102---------------------------
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--NIFR---------------------------   59 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~--~~~~---------------------------   59 (242)
                      ||+||||||+-.+         .+.-.+-++.+.++ .++++|+|+-  .+..                           
T Consensus         2 iV~KFGGsSvr~~---------F~eA~~L~~~L~E~-~~v~VVVSALkGiTD~L~~ya~t~D~~~~~~i~~~y~~f~~~~   71 (341)
T TIGR02078         2 IVVKFGGSSVRYD---------FEEALELVKSLSEE-KEVVVVVSALKGITDELIRYANTFDKKAAVKIEEIYVEFAKEL   71 (341)
T ss_pred             EEEEECCCCHHHH---------HHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             6898568413666---------89999999985169-8689998534442579998731104688999999999877750


Q ss_pred             ----------HHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH------------HHHHHH
Q ss_conf             ----------3344203777754-02467888889899999999999761886411340010------------024566
Q gi|254780777|r   60 ----------GSQVVAENYLLCE-RSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFM------------PQVCEV  116 (242)
Q Consensus        60 ----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  116 (242)
                                ........+..++ .+-.+...+.+.+.++.+.+..+...++......+.+.            +.....
T Consensus        72 gvd~~~l~~~l~~~~n~~~dlP~keAL~D~I~S~GE~lSA~ifaeGL~~L~i~g~~v~p~d~~~A~G~FGnafidik~Sk  151 (341)
T TIGR02078        72 GVDLNILSPYLKELFNPKPDLPPKEALRDYILSLGELLSAVIFAEGLKLLGINGKVVDPWDLLVAKGEFGNAFIDIKKSK  151 (341)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHHEEEECCCCCEEEEHHHHH
T ss_conf             88622334678876236778781122356677775789999997013531203227652666277436465477464655


Q ss_pred             HHHHHHCCHHHHCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54321000011001111124655--------6777621578888864164466514754351234322344444444115
Q gi|254780777|r  117 FSCRNAVSYLSQGKVVIFSGGTG--------NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT  188 (242)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is  188 (242)
                      .........++.+.+|+++|..+        ..+|++|++|..+|.++++.++.|++||+|+||+|||.+|-|++|+.+|
T Consensus       152 ~~~k~~~~~l~~G~iPvipGF~gnlnGyrvTlGRGGSDYSAvalg~l~~s~~v~IMSdVEGIfTADPKLvPsArLIpY~S  231 (341)
T TIGR02078       152 RNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLS  231 (341)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCCCHHCCCCCC
T ss_conf             57778898886583022146206888448986478622799999987512268997345600435866375001033334


Q ss_pred             HHHHH---HCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             99998---559981409999999974996999518985479999779987824668
Q gi|254780777|r  189 YNQFI---EKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       189 ~~e~l---~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      |+|++   ..|-+.+|-+|++++++..||+..=.+++          =+-||+|+.
T Consensus       232 Y~Ei~iAaK~GMkAl~wkA~~l~~e~~ip~lfGrt~d----------wr~GT~~s~  277 (341)
T TIGR02078       232 YEEILIAAKLGMKALQWKAADLAKEYKIPVLFGRTRD----------WRMGTVVSN  277 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC----------CEEEEEEEC
T ss_conf             7799997452057776652000157543587415466----------401267762


No 52 
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.90  E-value=1.4e-22  Score=158.79  Aligned_cols=199  Identities=21%  Similarity=0.233  Sum_probs=136.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99940036853887770899999999999999976990999823654102334420377775402467888889899999
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL   89 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (242)
                      |+|||||.+.+          ..++.+.++.+  .+.+++||.|||.+++.+....+... .+...++++...+|.+..+
T Consensus         1 VvKiGGSL~~~----------~~~ll~~l~~~--~~~~v~IVpGGG~fAd~vR~~~~~~~-~~d~~aH~mAi~Am~~~a~   67 (203)
T cd04240           1 VVKIGGSLIRE----------AVRLLRWLKTL--SGGGVVIVPGGGPFADVVRRYQERKG-LSDAAAHWMAILAMEQYGY   67 (203)
T ss_pred             CEEEEEECCCC----------HHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_conf             97982056466----------89999999983--59978999798089999999999829-9878999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHCHHHHHHCCC
Q ss_conf             9999997618864113400100245665432100001100111112465567---7762157888886416446651475
Q gi|254780777|r   90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNA---FLTTDSAAALRASEIGADVILKGTQ  166 (242)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~a~~ia~~~~ad~l~i~td  166 (242)
                      +++......-    ......   ..+. ..+.....+.......  ...+++   ..++|+.|+.+|..++|+.|++.||
T Consensus        68 ll~~~~~~~~----~~~~~~---~~~~-~~~~~~~v~lP~~~l~--~~~~lp~sWdvtsDs~a~~~A~~l~a~~li~~~~  137 (203)
T cd04240          68 LLADLEPRLV----ARTLAE---LTDV-LERGKIAILLPYRLLL--DTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTD  137 (203)
T ss_pred             HHHHHCCHHH----CCCHHH---HHHH-HHCCCCEEEECHHHHC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9996013101----046477---9999-7338915871158751--5898887877661899999999759885899856


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC-CCCCEE
Q ss_conf             4351234322344444444115999985599814099999999749969995189854799997799-878246
Q gi|254780777|r  167 VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGI-GRSTII  239 (242)
Q Consensus       167 vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge-~~GT~I  239 (242)
                      |||+|++|      +|++++++..|+.  +..++|+.+.+++.+++++++|+||+.|+++.++|+|+ .+||+|
T Consensus       138 vdGiy~~~------~kl~~~i~~~~l~--~~~~VD~~~~~~~~~~~i~~~VvnG~~p~~i~~~l~g~~~~GT~I  203 (203)
T cd04240         138 VDGIYEKD------GKLVNEIAAAELL--GETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CCCCCCCC------HHHHHHCCHHHHC--CCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCC
T ss_conf             77551875------0554115898864--887410778999997696399987998799999986898798579


No 53 
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.89  E-value=2.3e-22  Score=157.58  Aligned_cols=217  Identities=18%  Similarity=0.146  Sum_probs=139.1

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHCCCCC------CCCHHHHHHHHH
Q ss_conf             999940036853887770899999999999999976990999823654102334-4203777------754024678888
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ-VVAENYL------LCERSTVDSMGM   81 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~-~~~~~~~------~~~~~~~~~~~~   81 (242)
                      ||||+|||+|+++       +.+.+++++|+.++..|.+++|||||+....... ..+....      .-+..... ...
T Consensus         1 IVIKlGG~~l~d~-------~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvTd~~~l~-~~~   72 (256)
T cd04238           1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETME-IVE   72 (256)
T ss_pred             CEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHH-HHH
T ss_conf             9899786894598-------79999999999999889929999188299999999869983502673146187899-999


Q ss_pred             HHH-HHHHHHHHHHHHHHCCCCCCCCCCH--------H-----HH----HHHHHHHHHHCCHHHHCCCCCCCCC-----C
Q ss_conf             898-9999999999976188641134001--------0-----02----4566543210000110011111246-----5
Q gi|254780777|r   82 LST-VINALALDLALRKINVPTVILSSIF--------M-----PQ----VCEVFSCRNAVSYLSQGKVVIFSGG-----T  138 (242)
Q Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~  138 (242)
                      ... -.....+...+...+.+....+..+        .     +.    .....+.......++.+.+|+....     .
T Consensus        73 ~~l~g~in~~l~~~l~~~g~~aiglsg~d~~~i~a~~~~~~~~d~g~vG~v~~v~~~~i~~lL~~g~IPVi~pi~~~~~G  152 (256)
T cd04238          73 MVLAGKVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG  152 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECEEECCCC
T ss_conf             99853389999999997799721214655877999975564434342455443558999999847994476041356888


Q ss_pred             CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHC
Q ss_conf             56777621578888864164466514754351234322344444444115999985-------59981409999999974
Q gi|254780777|r  139 GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDC  211 (242)
Q Consensus       139 ~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~  211 (242)
                      +....+.|..|+.+|.+++||.|+++||++|+|+.+      ++++++++.+|+.+       .|+|..|+.|+..|.++
T Consensus       153 ~~~ninaD~~Aa~lA~~l~AdkLi~ltdv~Gv~~~~------g~~i~~lt~~e~~~l~~~~~~~gGM~~Kl~aa~~a~~~  226 (256)
T cd04238         153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDP------GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG  226 (256)
T ss_pred             CEEEECHHHHHHHHHHHHCCCCEEEECCCCCEECCC------CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf             689637999999999972801089852888615688------75234127999999997696689539999999999984


Q ss_pred             CC-CEEEEECCCCCHHHHHHC-CCCCCCEE
Q ss_conf             99-699951898547999977-99878246
Q gi|254780777|r  212 SI-PIIVFSIHSPGGIWGGLS-GIGRSTII  239 (242)
Q Consensus       212 gI-~v~I~ng~~~~~i~~~l~-Ge~~GT~I  239 (242)
                      |+ .++|.||+.|+.|...|- .+..||+|
T Consensus       227 Gv~rv~Ii~g~~~~~Ll~eLft~~G~GT~I  256 (256)
T cd04238         227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI  256 (256)
T ss_pred             CCCEEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf             999799937999877999973799985879


No 54 
>KOG0456 consensus
Probab=99.88  E-value=4.8e-22  Score=155.53  Aligned_cols=217  Identities=18%  Similarity=0.190  Sum_probs=142.3

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH------HHH-----------------
Q ss_conf             999994003685388777089999999999999997699099982365410233------442-----------------
Q gi|254780777|r    8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS------QVV-----------------   64 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~------~~~-----------------   64 (242)
                      .+|.||||||+..-       ++.-.++  +..+.-...++++|.|+.+.....      ...                 
T Consensus        80 ~~V~KFGGsSV~s~-------~~~i~v~--~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIk  150 (559)
T KOG0456          80 TCVMKFGGSSVGSA-------ERMIEVA--VLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIK  150 (559)
T ss_pred             EEEEECCCCCCCCC-------CHHHHHH--HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHH
T ss_conf             89994288411334-------0013356--78874687773899971344125453310020001656743478999999


Q ss_pred             ------------------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             ------------------------------03777754024678888898999999999997618864113400100245
Q gi|254780777|r   65 ------------------------------AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVC  114 (242)
Q Consensus        65 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
                                                    .........++.+.....+..++..+++..+.+.|.....+...+.....
T Consensus       151 e~Hi~ta~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~  230 (559)
T KOG0456         151 ELHIRTAHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFIT  230 (559)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEECCC
T ss_conf             98776698854488999999999999999988987615245667654346788999999987328532351143420332


Q ss_pred             ----------HHHHHH----HHCCHHHHCCCCCCCCC----------CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCC
Q ss_conf             ----------665432----10000110011111246----------556777621578888864164466514754351
Q gi|254780777|r  115 ----------EVFSCR----NAVSYLSQGKVVIFSGG----------TGNAFLTTDSAAALRASEIGADVILKGTQVDGV  170 (242)
Q Consensus       115 ----------~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGi  170 (242)
                                +.....    ....-.....+|++.++          +.+.+|.+|..|+.++.++++|.+..|.||||+
T Consensus       231 ~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv  310 (559)
T KOG0456         231 TDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGV  310 (559)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             43334324788878999875243101377663686003367656200035677216689999887181454213234752


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             2343223444444441159999855---99814099999999749969995189854799997799878246689
Q gi|254780777|r  171 YSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       171 yt~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +|+||+++|.|++++.++++|+.+.   |+.|+||...+.+.+..||++|.|..+|         ..+||+|+++
T Consensus       311 ~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP---------~~~GTvI~~d  376 (559)
T KOG0456         311 LTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNP---------TAPGTVITPD  376 (559)
T ss_pred             EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEECCCCC---------CCCCEEECCC
T ss_conf             74388647775006865877877877521121056333411306762586337799---------9994286362


No 55 
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.87  E-value=5.7e-21  Score=148.93  Aligned_cols=224  Identities=16%  Similarity=0.143  Sum_probs=140.6

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCCCC------CCCCHHHHH
Q ss_conf             824999994003685388777089999999999999997699099982365410233-4420377------775402467
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAENY------LLCERSTVD   77 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~~~------~~~~~~~~~   77 (242)
                      +=|++|||+||+.|.++       +.+.+++++|+.++..|.+++||||||...... ...+...      ..-+.....
T Consensus        13 rgktiVIklGG~~l~d~-------~~~~~~~~dI~~L~~~G~~vVlVHGggpqi~~~l~~~gi~~~~~~G~RvT~~~~l~   85 (279)
T cd04250          13 RGKTVVIKYGGNAMKDE-------ELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETME   85 (279)
T ss_pred             CCCEEEEEECHHHHCCH-------HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf             89989999890784697-------79999999999999889929999699679999999869984223774357388899


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCH--------HH---------H----HHHHHHHHHHCCHHHHCCCCCCC
Q ss_conf             88888989-999999999976188641134001--------00---------2----45665432100001100111112
Q gi|254780777|r   78 SMGMLSTV-INALALDLALRKINVPTVILSSIF--------MP---------Q----VCEVFSCRNAVSYLSQGKVVIFS  135 (242)
Q Consensus        78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~----~~~~~~~~~~~~~~~~~~~~~~~  135 (242)
                       ...+... .....+...+...+.+..-.+..+        ..         .    .....+.......++.+.+|+..
T Consensus        86 -iv~~~l~G~vn~~lv~~l~~~g~~avglsg~dg~~i~a~~~~~~~~~~~~D~g~vG~v~~vd~~~i~~ll~~g~IpVIs  164 (279)
T cd04250          86 -IVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIA  164 (279)
T ss_pred             -HHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             -9999985614699999999739985462266686699997555555556656645665522789999998579748964


Q ss_pred             CC----C-CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHH
Q ss_conf             46----5-56777621578888864164466514754351234322344444444115999985-------599814099
Q gi|254780777|r  136 GG----T-GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCA  203 (242)
Q Consensus       136 ~~----~-~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~  203 (242)
                      ..    . +....+.|..|+.+|.+++||.|+++|||+|+|+..+..   .+++++++.+|+.+       .|+|.-|++
T Consensus       165 plg~~~~G~~~NvnaD~~A~~lA~aL~AdkLi~ltdv~Gv~~~~~~~---~~~i~~lt~~e~~~li~~~~i~ggM~pKl~  241 (279)
T cd04250         165 PVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDP---GSLISEISLKEAEELIADGIISGGMIPKVE  241 (279)
T ss_pred             CCCCCCCCCEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC---CCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             64168989786688999999999986449499995881110588887---540025899999999975976897499999


Q ss_pred             HHHHHHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEE
Q ss_conf             9999997499-699951898547999-97799878246
Q gi|254780777|r  204 SVVLARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTII  239 (242)
Q Consensus       204 A~~~a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I  239 (242)
                      |+.-|.++|+ .++|.||+.|+.|.. .+.++..||+|
T Consensus       242 aa~~Al~~GV~rvhIidg~~~~~LL~ELft~~G~GT~I  279 (279)
T cd04250         242 ACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI  279 (279)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCC
T ss_conf             99999984999799946989887999981799986609


No 56 
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260   Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway.    This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=99.84  E-value=7.3e-20  Score=142.11  Aligned_cols=220  Identities=20%  Similarity=0.236  Sum_probs=161.5

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH--HHHHH--------------------
Q ss_conf             24999994003685388777089999999999999997699099982365410--23344--------------------
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF--RGSQV--------------------   63 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~--~~~~~--------------------   63 (242)
                      +..||.||||+++.+       .+.+.+.++.+.+...+|+++++|.|+....  .....                    
T Consensus         1 ~~~~v~kfGGt~~~~-------~~~~~~~~~~~~~~~~~g~~~~vv~sa~~~~td~l~~~~~~~~pg~~~~~~~~~~~~~   73 (480)
T TIGR00656         1 MELIVQKFGGTSVGS-------GERIKNAARIVLKEKEEGHKVVVVVSAMGGVTDALLSLAEGLDPGEGGAKGGDLLGIL   73 (480)
T ss_pred             CCEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             944787426721254-------2678888878887764077148998615652024665543202322113567889999


Q ss_pred             -----H----CCCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHH
Q ss_conf             -----2----0377------------------77540246788888989999999999976188641134--00100245
Q gi|254780777|r   64 -----V----AENY------------------LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILS--SIFMPQVC  114 (242)
Q Consensus        64 -----~----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  114 (242)
                           .    ....                  .....++.+.....+......++...+...|.....+.  ........
T Consensus        74 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~Ge~~s~~~~~~~l~~~g~~~~~~~p~g~~~g~~t  153 (480)
T TIGR00656        74 RELGLPLRYPEAISDEILELELNKLLLAAAALGEWTPRERDLLVSYGELLSSALLSGALRDLGVKAIWLDPFGGEAGILT  153 (480)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE
T ss_conf             98643331100135567887777788877886421755777776411257899999999852762144143456222232


Q ss_pred             H--------------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCC
Q ss_conf             6--------------65432100001100111112465---------567776215788888641644665147543512
Q gi|254780777|r  115 E--------------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSAAALRASEIGADVILKGTQVDGVY  171 (242)
Q Consensus       115 ~--------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiy  171 (242)
                      +              ..........++.+.++++.++.         .+..|++|++|++++..++|+.+.+||||+|+|
T Consensus       154 ~~~~~~a~~~~~~~~~~~~~~l~~~l~~g~~~~~~Gf~G~~~~g~~ttlGrGGsd~~a~~l~~~l~a~~~~~~tdv~G~~  233 (480)
T TIGR00656       154 DDNFGNAKIDELATEGLAAERLLPLLEEGIIPVVAGFQGATEEGDTTTLGRGGSDLTAALLGAALKADRVDIYTDVPGVY  233 (480)
T ss_pred             CCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             45455520002224677888888887549758972333577676444304786237899987521776379974478501


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHC---CCCCCCHHHHHHH-HHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             343223444444441159999855---9981409999999-974996999518985479999779987824668
Q gi|254780777|r  172 SADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA-RDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       172 t~dP~~~~~ak~i~~is~~e~l~~---G~~v~~~~A~~~a-~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      +.||+..+.|++++.++|+|+.++   |++++|+++++++ .+.++|+.+.+...+         +..||+|.+
T Consensus       234 ~~dPr~~~~a~~~~~~~~~e~~~la~~Ga~~l~p~~~~~~d~~~~~~~~~~~~~~~---------~~~gt~~~~  298 (480)
T TIGR00656       234 TTDPRVVEGAKKLPKISYEEALELATLGAKVLHPRTLEPADKEGGVPIEVRSSFDP---------EAEGTLITN  298 (480)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEEEECCCC---------CCCCCEECC
T ss_conf             26864245643223323899999975250120321002011013663588624577---------767414304


No 57 
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.81  E-value=1.9e-18  Score=133.35  Aligned_cols=217  Identities=18%  Similarity=0.127  Sum_probs=135.3

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHHHHHH
Q ss_conf             999940036853887770899999999999999976-99099982365410233-44203------77775402467888
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAK-GIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTVDSMG   80 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~-g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~~~~~   80 (242)
                      +|||+||+.+.+       .+.+++++.+++.+.+. |+.+++|||||...... ...+-      +...-+........
T Consensus         1 iVIK~GG~~l~~-------~~~~~~~~~~i~~l~~~~~~~vVlVHGggpqI~~~l~~~gi~~~f~~G~RvTd~~tl~vv~   73 (252)
T cd04249           1 LVIKLGGALLET-------EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT   73 (252)
T ss_pred             CEEEECCHHCCC-------HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH
T ss_conf             989978246178-------8899999999999998189876998799689999999769997237965658999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--------------HHHHHHHHHHCCHHHHCCCCCCCCC----CC-CC
Q ss_conf             88989999999999976188641134001002--------------4566543210000110011111246----55-67
Q gi|254780777|r   81 MLSTVINALALDLALRKINVPTVILSSIFMPQ--------------VCEVFSCRNAVSYLSQGKVVIFSGG----TG-NA  141 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~  141 (242)
                      +......+..+...+...+.+..-.+..+...              .....+.......++.+.+|+....    ++ ..
T Consensus        74 ~vl~g~vn~~lv~~l~~~g~~a~gl~~~dg~~~~~~~~~~dlG~vG~v~~Vn~~~i~~ll~~g~IPVisplg~~~~G~~~  153 (252)
T cd04249          74 GALAGTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLM  153 (252)
T ss_pred             HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHCCCCCCEECCCEECCCCCEE
T ss_conf             99846159999999973589862044567746873023666786555323557899998628987476353148999879


Q ss_pred             CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHHHHHCCC-
Q ss_conf             77621578888864164466514754351234322344444444115999985-------5998140999999997499-
Q gi|254780777|r  142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVLARDCSI-  213 (242)
Q Consensus       142 ~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~a~~~gI-  213 (242)
                      ..+.|..|+.+|.+++|+ |+++|||+|+|+.      +..++++++..|+.+       .|+|.-|++++.-|.++|+ 
T Consensus       154 NiNaD~~A~~iA~aL~A~-Li~ltdv~Gvld~------~g~li~~l~~~e~~~li~~~~i~gGMipKl~aa~~Al~~gv~  226 (252)
T cd04249         154 NVNADQAATAIAQLLNAD-LVLLSDVSGVLDA------DKQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRR  226 (252)
T ss_pred             ECCHHHHHHHHHHHHCCC-EEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             759999999999971598-9999688613889------998942189999999997595479739999999999981998


Q ss_pred             CEEEEECCCCCHHHHHHCCCCCCCEE
Q ss_conf             69995189854799997799878246
Q gi|254780777|r  214 PIIVFSIHSPGGIWGGLSGIGRSTII  239 (242)
Q Consensus       214 ~v~I~ng~~~~~i~~~l~Ge~~GT~I  239 (242)
                      .++|.+|+.|..|..++.++.+||+|
T Consensus       227 ~v~I~~g~~~~~L~elft~~GiGT~I  252 (252)
T cd04249         227 GIDIASWQYPEQLTALLAGEPVGTKI  252 (252)
T ss_pred             EEEEECCCCCHHHHHHHCCCCCCCCC
T ss_conf             79994389873899997599987739


No 58 
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.79  E-value=4.8e-18  Score=130.91  Aligned_cols=208  Identities=18%  Similarity=0.219  Sum_probs=128.4

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCC------------CCCCHHHH
Q ss_conf             999940036853887770899999999999999976990999823654102334420377------------77540246
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY------------LLCERSTV   76 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~------------~~~~~~~~   76 (242)
                      ||||+|||.+.+          +.++   ++.+.+.|.++++||||+.............            ..-+....
T Consensus         1 iVIK~GG~~l~d----------~~~~---~~~l~~lG~~~VlVHGgg~qI~~~l~~~gi~~~fv~~~~Gl~~RvTd~~~l   67 (257)
T cd04251           1 IVVKIGGSVVSD----------LDKV---IDDIANFGERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETL   67 (257)
T ss_pred             CEEEECHHHHHC----------HHHH---HHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCEEECCHHHH
T ss_conf             989989588769----------8999---999997599989997997799999998599967741789862021898999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--------------------------HHHHHHHHHCCHHHHCC
Q ss_conf             7888889899999999999761886411340010024--------------------------56654321000011001
Q gi|254780777|r   77 DSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV--------------------------CEVFSCRNAVSYLSQGK  130 (242)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~  130 (242)
                      . .........+..+...+...+.+....+..+....                          ....+.......++.+.
T Consensus        68 ~-~v~~~~g~vn~~lv~~l~~~g~~a~glsg~d~~~~~~~~~~~~~~~~~g~~~~id~g~vG~v~~V~~~~i~~ll~~g~  146 (257)
T cd04251          68 E-VFVMVMGLINKKIVARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGY  146 (257)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCC
T ss_conf             9-999999999999999998489986522266673689851252442467860104579767798987899999984899


Q ss_pred             CCCCCC-----CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-----CCCCCC
Q ss_conf             111124-----6556777621578888864164466514754351234322344444444115999985-----599814
Q gi|254780777|r  131 VVIFSG-----GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-----KGLKVM  200 (242)
Q Consensus       131 ~~~~~~-----~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-----~G~~v~  200 (242)
                      +|+...     ..+....+.|..|+.+|..++|+.|+++|||+|+|. |      .+++++++..|+.+     .|+|.-
T Consensus       147 iPVispig~~~~G~~~NvnaD~~A~~iA~aL~A~kLI~ltdv~Gvl~-d------g~li~~l~~~e~~~li~~i~gGM~p  219 (257)
T cd04251         147 LPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYL-D------GRVIERITVSDAESLLEKAGGGMKR  219 (257)
T ss_pred             CEEECCCCCCCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCEEEC-C------CEECCCCCHHHHHHHHHHHCCCHHH
T ss_conf             45866766688760742877999999999809996999968840424-9------8453658999999999873485399


Q ss_pred             CHHHHHHHHHCCCC-EEEEECCCCCHHHHHHCCCCCCCEE
Q ss_conf             09999999974996-9995189854799997799878246
Q gi|254780777|r  201 DCASVVLARDCSIP-IIVFSIHSPGGIWGGLSGIGRSTII  239 (242)
Q Consensus       201 ~~~A~~~a~~~gI~-v~I~ng~~~~~i~~~l~Ge~~GT~I  239 (242)
                      |++|+.-|.++|++ ++|.||+.|+.|...|+|  .||+|
T Consensus       220 Kl~aa~~A~~~GV~~v~Ii~g~~~~~ll~el~G--~GT~I  257 (257)
T cd04251         220 KLLAAAEAVEGGVREVVIGDARADSPISSALNG--GGTVI  257 (257)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC--CCCCC
T ss_conf             999999999809997999079998779999658--98469


No 59 
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.78  E-value=1.8e-17  Score=127.32  Aligned_cols=226  Identities=14%  Similarity=0.125  Sum_probs=141.7

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHCC------CCCCCCHHHH
Q ss_conf             882499999400368538877708999999999999999769909998236541023-344203------7777540246
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVAE------NYLLCERSTV   76 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~~------~~~~~~~~~~   76 (242)
                      +.=|.+|||+||+.+.++       ....++++.|+-++.-|.++|+||||+..... ....+.      +...-+....
T Consensus        21 ~rgktfVIk~gG~~~~d~-------~l~~~~~~DialL~~lGik~VlVHGgg~qI~~~l~~~gi~~~f~~G~RvTd~~~l   93 (284)
T CHL00202         21 FRGRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTM   93 (284)
T ss_pred             HCCCEEEEEECCEEEECH-------HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             689989999896666375-------4899999999999988997999889966899999976998436288321887899


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCH--------H---HHH----HHHHHHHHHCCHHHHCCCCCCCCC---
Q ss_conf             788888-989999999999976188641134001--------0---024----566543210000110011111246---
Q gi|254780777|r   77 DSMGML-STVINALALDLALRKINVPTVILSSIF--------M---PQV----CEVFSCRNAVSYLSQGKVVIFSGG---  137 (242)
Q Consensus        77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~---  137 (242)
                      .-..+. ....+. .+...+...+.+.......+        .   +..    ....+.......++.+.+|+....   
T Consensus        94 ~vv~~vl~g~vn~-~lv~~l~~~g~~a~gl~g~dg~~i~A~~~~~~D~g~vG~V~~Vd~~~I~~lL~~g~IpVIspig~~  172 (284)
T CHL00202         94 EIVEMVLAGKVNK-DLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAAD  172 (284)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHCCCEEEEECCEEC
T ss_conf             9999998778999-999999856995055312557669983589877444444123267999999708975998044067


Q ss_pred             -C-CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---C----CCCCCCHHHHHHH
Q ss_conf             -5-56777621578888864164466514754351234322344444444115999985---5----9981409999999
Q gi|254780777|r  138 -T-GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---K----GLKVMDCASVVLA  208 (242)
Q Consensus       138 -~-~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~----G~~v~~~~A~~~a  208 (242)
                       + +....+.|..|+.+|..++|+.|+++||++|+|.+.+   ....++.+++..|+.+   .    |+|.-|+.++--|
T Consensus       173 ~~G~~~NvnaD~~A~~iA~aL~A~KLI~ltdv~Gvl~d~~---~~~~li~~l~~~e~~~l~~~~~i~~gm~pkl~aa~~A  249 (284)
T CHL00202        173 HDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADIN---DPNSLISTLNIKEARNLASTGIISGGMIPKVNCCIRA  249 (284)
T ss_pred             CCCCEEEECHHHHHHHHHHHHCCCCEEEEECCCCEECCCC---CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             9999895099999999999864196999988967106788---7653244489999999987598787469999999999


Q ss_pred             HHCCC-CEEEEECCCCCH-HHHHHCCCCCCCEEC
Q ss_conf             97499-699951898547-999977998782466
Q gi|254780777|r  209 RDCSI-PIIVFSIHSPGG-IWGGLSGIGRSTIIS  240 (242)
Q Consensus       209 ~~~gI-~v~I~ng~~~~~-i~~~l~Ge~~GT~I~  240 (242)
                      -++|+ .++|.||+.|+. |..++..+..||+|-
T Consensus       250 l~~GV~rvhiidg~~~~aLL~ELfT~~G~GT~Iv  283 (284)
T CHL00202        250 LAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             HHCCCCEEEEECCCCCCEEHHHHHCCCCCEEEEE
T ss_conf             9859998999258899700056527999814884


No 60 
>PRK12353 carbamate kinase; Reviewed
Probab=99.78  E-value=6.7e-18  Score=129.99  Aligned_cols=229  Identities=21%  Similarity=0.258  Sum_probs=136.3

Q ss_pred             CEEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHH-HHCCC---CC--CCCHHHHH
Q ss_conf             2499999400368538877-7089999999999999997699099982365410-2334-42037---77--75402467
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQ-VVAEN---YL--LCERSTVD   77 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~-~~~~~---~~--~~~~~~~~   77 (242)
                      +||||||+||+++.++++. .--.+.++..|++|+.+.+.|++++||||+|-.. .... .....   ..  +.+.....
T Consensus         2 ~k~IVIalGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~G~~~VitHGnGPQVG~lll~~~~~~~~~~~~~pld~~~a~   81 (312)
T PRK12353          2 MKKIVVALGGNALGSSDGSAEEQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNLLLQQAAADSEKNPAMPLDVCVAM   81 (312)
T ss_pred             CCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEECCHHHH
T ss_conf             84499983725318999998999999999999999999889969998388448899999866542688898211014343


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH--------------
Q ss_conf             88888989999999999976188641134--------------------------00100245665--------------
Q gi|254780777|r   78 SMGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF--------------  117 (242)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~--------------  117 (242)
                      +.+..+.++.. .+...+...+......+                          ..+........              
T Consensus        82 tqG~IGy~l~q-~l~~~l~~~g~~~~v~tlvtqv~Vd~~Dpaf~~ptKpIG~~y~~~ea~~l~~~~g~~~~~d~g~G~RR  160 (312)
T PRK12353         82 SQGYIGYWLQN-ALDNELLKRGINKPVATVVTQVEVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGWTFKEDAGRGYRR  160 (312)
T ss_pred             CCCHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEE
T ss_conf             03069999999-99999984589986489998998878760002788765665689999999972797442438886277


Q ss_pred             -----------HHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             -----------432100001100111112465567-------------77621578888864164466514754351234
Q gi|254780777|r  118 -----------SCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       118 -----------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
                                 .......+++.+.+++..+..+++             ..|-|..|+++|..++||.++++|||+|||-.
T Consensus       161 VV~SP~P~~iie~~~I~~L~~~g~IvIa~GGGGIPV~~~~g~~~Gv~aVIdkDlaaa~LA~~l~Ad~lliLTdV~~V~~n  240 (312)
T PRK12353        161 VVPSPKPVDIIEKEAIKTLVEAGVVVIAAGGGGIPVVREGGGLKGVEAVIDKDFASALLAELIDADLLIILTAVDKVYIN  240 (312)
T ss_pred             EECCCCCCCEECHHHHHHHHHCCCEEEECCCCCCCEECCCCCEECCEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHC
T ss_conf             50699973022399999999789789964888776576799446613331533888999997199879997163467652


Q ss_pred             CCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-C-EEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             322344444444115999985--------5998140999999997499-6-999518985479999779987824668
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-P-IIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~-v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      -++  |+.++++++|.+|+.+        .|+|.=|..|+--+.++|- . .+|   ..++.+..+|+| ..||+|++
T Consensus       241 ~g~--p~q~~l~~lt~~e~~~~~~~G~F~~GsM~PKVeAai~fv~~gg~~~aiI---t~l~~~~~al~G-~~GT~I~~  312 (312)
T PRK12353        241 FGK--PNQKKLDRVTVSELEKYIEEGQFAPGSMLPKVEAAISFVESGGKRKAII---TSLENAKEALEG-KAGTVIVK  312 (312)
T ss_pred             CCC--CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE---CCHHHHHHHHCC-CCCCEEEC
T ss_conf             899--8613321388999999997799888882699999999999489837998---989999999679-99848829


No 61 
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.78  E-value=3.4e-17  Score=125.68  Aligned_cols=224  Identities=17%  Similarity=0.170  Sum_probs=141.7

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC------CCCCCCCHHHHHH
Q ss_conf             24999994003685388777089999999999999997699099982365410-2334420------3777754024678
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA------ENYLLCERSTVDS   78 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~------~~~~~~~~~~~~~   78 (242)
                      +|.+|||+||+.+.++       +...++++.|+.++..|.+.++|||||-.. +.....+      .+...-+..+.. 
T Consensus         2 ~k~~VIK~GG~~~~~~-------~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tle-   73 (265)
T COG0548           2 GKTIVIKLGGSAMEDE-------NLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLE-   73 (265)
T ss_pred             CCEEEEEECCEEECCH-------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCEECCCHHHHH-
T ss_conf             9669999894644170-------27899999999999779947999289568889999769997634977767989999-


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCH--------HHHHH----------HHHHHHHHCCHHHHCCCCCCC----
Q ss_conf             8888989-999999999976188641134001--------00245----------665432100001100111112----
Q gi|254780777|r   79 MGMLSTV-INALALDLALRKINVPTVILSSIF--------MPQVC----------EVFSCRNAVSYLSQGKVVIFS----  135 (242)
Q Consensus        79 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~----  135 (242)
                      ...+... ..+..+-..+..++....-.+..+        .....          ..-+.......+....+|+..    
T Consensus        74 vv~mvl~G~vNk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~  153 (265)
T COG0548          74 VVEMVLGGTVNKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAV  153 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCEEEECCEE
T ss_conf             99999988889999999997187414555337878999986641343364044589878999999975798169807427


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------CCCCCCCHHHHHH
Q ss_conf             -46556777621578888864164466514754351234322344444444115999985-------5998140999999
Q gi|254780777|r  136 -GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE-------KGLKVMDCASVVL  207 (242)
Q Consensus       136 -~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~-------~G~~v~~~~A~~~  207 (242)
                       ...+....+.|+.|..+|.+++|+.|+++|||+|+|+..|..    ..+++++.+|+.+       .|+|.-|++++.-
T Consensus       154 ~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~  229 (265)
T COG0548         154 DEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIPKVEAALE  229 (265)
T ss_pred             CCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCC----EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             8999787048899999999973988299872770003489985----455357999999886249734860899999999


Q ss_pred             HHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEECC
Q ss_conf             997499-699951898547999-9779987824668
Q gi|254780777|r  208 ARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTIISG  241 (242)
Q Consensus       208 a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I~~  241 (242)
                      |.++|+ +++|.||+.|+.|.. .+.++.+||.|.+
T Consensus       230 A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~  265 (265)
T COG0548         230 ALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR  265 (265)
T ss_pred             HHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEECC
T ss_conf             998499738996377862699998457985068259


No 62 
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.75  E-value=5.5e-17  Score=124.33  Aligned_cols=221  Identities=16%  Similarity=0.143  Sum_probs=134.2

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHCC------CCCCCCHHHH
Q ss_conf             8824999994003685388777089999999999999997699099982365410233-44203------7777540246
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-QVVAE------NYLLCERSTV   76 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~~~~~------~~~~~~~~~~   76 (242)
                      ++-|.+|||+||+.+.++        .+.+++++|+-++..|.++++|||||...... ...+.      +...-+....
T Consensus        16 f~~kt~VIK~GG~~~~~~--------~l~~~~~di~lL~~~Gi~~VlVHGGG~~I~~~l~~~gi~~~fv~G~RVTd~~tl   87 (280)
T cd04237          16 HRGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAAL   87 (280)
T ss_pred             HCCCEEEEEECCHHHCCH--------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCHHHH
T ss_conf             689989999896330774--------499999999999988996999928986779999986997462178777999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HCCCC---CCC-----CCCHH------HH----HHHHHHHHHHCCHHHHCCCCCC
Q ss_conf             788888989999999999976----18864---113-----40010------02----4566543210000110011111
Q gi|254780777|r   77 DSMGMLSTVINALALDLALRK----INVPT---VIL-----SSIFM------PQ----VCEVFSCRNAVSYLSQGKVVIF  134 (242)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~-----~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~  134 (242)
                      ..........+..+ ...+..    .+...   ...     .....      +.    .....+.......++.+.+|++
T Consensus        88 ~vv~~~~G~vn~~i-~a~ls~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~vG~v~~Vn~~~l~~ll~~~~iPVI  166 (280)
T cd04237          88 ECVKEAAGAVRLEI-EALLSMGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL  166 (280)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEE
T ss_conf             99999999999999-99997053435653557234058658988865314744467983026649999868758965896


Q ss_pred             CCC-----CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---C-----CCCCCC
Q ss_conf             246-----556777621578888864164466514754351234322344444444115999985---5-----998140
Q gi|254780777|r  135 SGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---K-----GLKVMD  201 (242)
Q Consensus       135 ~~~-----~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~-----G~~v~~  201 (242)
                      ...     .+....+.|..|+.+|..++|+.++++|||+|+++.      +.+++++++..|+.+   .     |+|.-|
T Consensus       167 spig~~~~G~~~NvNAD~~A~~iA~aL~A~kLi~ltdv~Gvl~~------~~~~i~~l~~~e~~~ll~~~~~i~~GMipK  240 (280)
T cd04237         167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL  240 (280)
T ss_pred             ECCEECCCCCEEEECHHHHHHHHHHHHHHCEEEEECCCCCEECC------CCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf             04318899988700899999999999744709987188832789------998865049999999998479888778999


Q ss_pred             HHHHHHHHHCCCC-EEEEECCCCCHHH-HHHCCCCCCCEE
Q ss_conf             9999999974996-9995189854799-997799878246
Q gi|254780777|r  202 CASVVLARDCSIP-IIVFSIHSPGGIW-GGLSGIGRSTII  239 (242)
Q Consensus       202 ~~A~~~a~~~gI~-v~I~ng~~~~~i~-~~l~Ge~~GT~I  239 (242)
                      ++++.-|.++|++ ++|.||+.|+.|. .++..+..||+|
T Consensus       241 l~~a~~Al~~GV~~vhIidg~~~~aLL~ElfT~~G~GT~I  280 (280)
T cd04237         241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI  280 (280)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             9999999983999899905999971467760699986709


No 63 
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.72  E-value=9.1e-17  Score=123.01  Aligned_cols=206  Identities=21%  Similarity=0.183  Sum_probs=130.9

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99940036853887770899999999999999976990999823654102334420377775402467888889899999
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL   89 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (242)
                      |+|.|||....            +.+.....+.+-+.++.+|.||+.|+.......+.....+ ....++...+|-.--.
T Consensus         3 vVk~~Gs~~~~------------~~~~~~~ale~~~~~i~iVpGGg~FAd~VR~id~~~~lSd-sasHwmAI~~Md~~G~   69 (212)
T COG2054           3 VVKKGGSGVAE------------RAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEFGLSD-SASHWMAITAMDQYGF   69 (212)
T ss_pred             EEEECCCCHHH------------HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH
T ss_conf             68862787088------------8899999998414608995184289999999987459875-0788999999999889


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCHHHHHHCCCCC
Q ss_conf             99999976188641134001002456654321000011001111124655-67776215788888641644665147543
Q gi|254780777|r   90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTG-NAFLTTDSAAALRASEIGADVILKGTQVD  168 (242)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~a~~ia~~~~ad~l~i~tdvd  168 (242)
                      +++    +........+..+....    ..+.....+......-....-+ -=..++|.+|+.+|...++..+++.||||
T Consensus        70 ~la----d~~~~~~~~tv~ep~~~----i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVd  141 (212)
T COG2054          70 YLA----DLASRFVTDTVTEPEDG----IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVD  141 (212)
T ss_pred             HHH----HHHCCCCCCEEECHHHC----CCCCCCEEEEEHHHHHCCCCCCCCEEECCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf             998----64300342023164442----6756606860067650278887652222318999999972982799995378


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC-CCCCCEECC
Q ss_conf             5123432234444444411599998559981409999999974996999518985479999779-987824668
Q gi|254780777|r  169 GVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSG-IGRSTIISG  241 (242)
Q Consensus       169 Giyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~G-e~~GT~I~~  241 (242)
                      |+|+.+|+    ++++++|+..|..+ |-..+|+.+-+++.+++++++++||..|.++..+++| +.+||+|.+
T Consensus       142 GI~~~~~~----~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         142 GIYEEDPK----GKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             CCCCCCCC----CHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             60115896----30566621755356-75315604068999718715998787889999987165654478757


No 64 
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.72  E-value=3.4e-16  Score=119.50  Aligned_cols=228  Identities=20%  Similarity=0.219  Sum_probs=138.1

Q ss_pred             EEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHHH--HCC----CCCCCCHHHH
Q ss_conf             499999400368538877-70--899999999999999976990999823654102-3344--203----7777540246
Q gi|254780777|r    7 KRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQV--VAE----NYLLCERSTV   76 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~~--~~~----~~~~~~~~~~   76 (242)
                      |||||-+||++|..+... +.  -.+.++.-|++|+++.++|++++|+||.|-... ....  ...    ...+.+...+
T Consensus         3 k~iVvALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vVitHGNGPQVG~i~l~~~~~~~~~~p~~PLd~~~A   82 (313)
T PRK12454          3 KRIVIALGGNALQQRGEKGTAENMMKNVRRTAEQIARLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA   82 (313)
T ss_pred             CEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             55999808365089999999999999999999999999987997999818813999999999873246899866035523


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC-----------------------HHHHHHHHH-----------HH
Q ss_conf             7888889899999999999761886411---3400-----------------------100245665-----------43
Q gi|254780777|r   77 DSMGMLSTVINALALDLALRKINVPTVI---LSSI-----------------------FMPQVCEVF-----------SC  119 (242)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~-----------~~  119 (242)
                      .+.+..+.+++. .+...+...+....+   .+..                       +........           ++
T Consensus        83 ~sQG~IGy~lqq-al~n~L~~~~~~~~v~tlvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~eD~grG~R  161 (313)
T PRK12454         83 MTQGWIGYMIQQ-ALRNVLPKRGIERQVATIVTQTIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGYR  161 (313)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEE
T ss_conf             013489999999-9999998539998469999899987876322089886268879999999998559789764898558


Q ss_pred             --------------HHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCC
Q ss_conf             --------------2100001100111112465567-------------7762157888886416446651475435123
Q gi|254780777|r  120 --------------RNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYS  172 (242)
Q Consensus       120 --------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt  172 (242)
                                    .....+++.+.+++..+..+++             ..|-|..|+++|..++||.|+++||||++|-
T Consensus       162 RVVpSP~P~~IvE~~~I~~Lv~~g~iVIa~GGGGIPVv~~~g~l~GveAVIDKD~aaa~LA~~l~Ad~liILTdVd~V~~  241 (313)
T PRK12454        162 RVVPSPDPLGIVEIETIKMLVENGVIVIAAGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL  241 (313)
T ss_pred             EECCCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCCEEECCCHHHHHHHHHHCCCEEEEEECCCHHEE
T ss_conf             86179999427528999999978988999489856668559827565204445188999999709998999616650000


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             4322344444444115999985--------5998140999-9999974996999518985479999779987824668
Q gi|254780777|r  173 ADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       173 ~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      .-  -.|+.+.++++|.+|+..        .|+|.=|.+| ++.+++.|-+++|.+   ++.+..+|+|+ .||.|.|
T Consensus       242 n~--g~p~q~~l~~it~~e~~~~~~eg~F~~GsM~PKV~Aai~Fve~gg~~aiIts---l~~~~~al~g~-~GT~IvP  313 (313)
T PRK12454        242 NY--GKPDQKALDKVTVDEAKKYYEEGHFPAGSMGPKILAAIRFVENGGRRAVIGD---LEKAVEALEGK-TGTRIIP  313 (313)
T ss_pred             CC--CCCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---HHHHHHHHCCC-CCCEECC
T ss_conf             38--9964122403889999999875998888826999999999994797699998---89999996799-9988659


No 65 
>PRK12686 carbamate kinase; Reviewed
Probab=99.72  E-value=3.2e-16  Score=119.60  Aligned_cols=228  Identities=18%  Similarity=0.220  Sum_probs=134.7

Q ss_pred             CEEEEEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHH-HHC---CCC--CCCCHHHHH
Q ss_conf             2499999400368538877-70899999999999999976990999823654102-334-420---377--775402467
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGF-GVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQ-VVA---ENY--LLCERSTVD   77 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~-~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~-~~~---~~~--~~~~~~~~~   77 (242)
                      .|||||++||++|..+++. .--...++..|++|+++.+.|++++|+||.|-... ... ...   ...  .+.+...+.
T Consensus         3 ~k~iVIAlGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~g~~vVitHGNGPQVG~l~l~~~~~~~~~~p~~Pld~~~A~   82 (313)
T PRK12686          3 KEKIVIALGGNAILQTEASAEAQQTAVREAMQHLVDLIEAGADIVITHGNGPQVGSLLLQQAESNSNKVPAMPLDTCVAM   82 (313)
T ss_pred             CCEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
T ss_conf             77799982803128999999999999999999999999869979998188079899999987643688898764045430


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCC---CCC------C-----------------HHHHHHHHH--------------
Q ss_conf             888889899999999999761886411---340------0-----------------100245665--------------
Q gi|254780777|r   78 SMGMLSTVINALALDLALRKINVPTVI---LSS------I-----------------FMPQVCEVF--------------  117 (242)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~-----------------~~~~~~~~~--------------  117 (242)
                      +.+..+.++.. .+...+...+.....   .+.      +                 +........              
T Consensus        83 sQG~IGy~lqq-al~n~l~~~~~~~~v~tllTqv~VD~~DpAF~~PtKpIGp~y~~eeA~~l~~~~gw~~~~d~g~g~RR  161 (313)
T PRK12686         83 SQGMIGYWLQT-ALNNELTERNIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR  161 (313)
T ss_pred             CCHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEE
T ss_conf             23379999999-99999986389986489998888888886775789860688799999999972498699748984489


Q ss_pred             -----------HHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCC
Q ss_conf             -----------432100001100111112465567-------------77621578888864164466514754351234
Q gi|254780777|r  118 -----------SCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSA  173 (242)
Q Consensus       118 -----------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~  173 (242)
                                 .......+++.+.+++..+..+++             ..|-|..|+++|..++||.++|+||||+||-.
T Consensus       162 VVpSP~P~~Ive~~~I~~Lv~~g~ivIa~GGGGIPV~~~~~~~~GveAVIDKDlaaa~LA~~l~AD~liILTdV~~V~~n  241 (313)
T PRK12686        162 VVPSPKPKEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDGNTLKGVEAVIDKDFASEKLAELIDADLLMILTGVENVFIN  241 (313)
T ss_pred             EECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEECCCEECEEEEECCCHHHHHHHHHCCCCEEEEEECCCEEEEC
T ss_conf             83699984114699999999689889982798743797589676302242544788999986199989997266602321


Q ss_pred             CCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHH-HHHHHC-CCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             322344444444115999985--------59981409999-999974-99699951898547999977998782466
Q gi|254780777|r  174 DPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASV-VLARDC-SIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       174 dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~-~~a~~~-gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      -.+  |+.+.++++|.+|+..        .|+|.=|+.|+ +.+++- |=..+|   ..++.+..+|+|+ .||.||
T Consensus       242 ~g~--p~q~~l~~it~~e~~~~~~~g~F~~GSM~PKVeAai~Fve~g~g~~aiI---~~l~~~~~al~G~-~GT~It  312 (313)
T PRK12686        242 FNK--PNQQKLDDISVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGKNKKAII---TSLEQAKEALAGN-AGTHIT  312 (313)
T ss_pred             CCC--CCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE---CCHHHHHHHHCCC-CCCEEE
T ss_conf             899--7522352189999999997599988882799999999998099986998---9899999996799-987871


No 66 
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.69  E-value=1.3e-15  Score=115.83  Aligned_cols=221  Identities=17%  Similarity=0.145  Sum_probs=135.0

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH-HHHHHC------CCCCCCCHHHHHH
Q ss_conf             249999940036853887770899999999999999976990999823654102-334420------3777754024678
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR-GSQVVA------ENYLLCERSTVDS   78 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~-~~~~~~------~~~~~~~~~~~~~   78 (242)
                      =|.+|||+||+++.+++        +.++++.|+-++.-|.++||||||+.... .....+      .+...-+......
T Consensus        25 gktfVI~~gG~a~~~~~--------~~~~~~DIaLL~slGIr~VlVHGggpqI~~~L~~~gi~s~f~~G~RVTD~~tl~~   96 (441)
T PRK05279         25 GKTFVIMLGGEAIAHGN--------FSNIVNDIALLHSLGIRLVLVHGARPQIEEQLAAHGIEPRYHKGLRITDAAALEC   96 (441)
T ss_pred             CCEEEEEECCEECCCCC--------HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHH
T ss_conf             99899998972036835--------8999999999986897699987997788999997699855139913699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--------CCC-----CCCHHHHH----------HHHHHHHHHCCHHHHCCCCCCC
Q ss_conf             888898999999999997618864--------113-----40010024----------5665432100001100111112
Q gi|254780777|r   79 MGMLSTVINALALDLALRKINVPT--------VIL-----SSIFMPQV----------CEVFSCRNAVSYLSQGKVVIFS  135 (242)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  135 (242)
                      ........+..+ ...+.. +.+.        ...     ...+....          ....+.......++.+.+|+..
T Consensus        97 v~~v~G~v~~~I-~a~Ls~-gl~nspm~g~~i~v~sGn~i~A~p~Gv~dGvD~g~vG~V~~Vd~~~I~~~L~~g~Ipvis  174 (441)
T PRK05279         97 VKQAAGELRLDI-EARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYCHTGEVRRIDTEAIRRQLDNGAIVLLS  174 (441)
T ss_pred             HHHHHHHHHHHH-HHHHHC-CCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHCCCEEEEC
T ss_conf             999999999999-999834-367875557724675486689876353137566754158797389999999789829986


Q ss_pred             CC-----CCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----------CCCCCC
Q ss_conf             46-----556777621578888864164466514754351234322344444444115999985----------599814
Q gi|254780777|r  136 GG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----------KGLKVM  200 (242)
Q Consensus       136 ~~-----~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----------~G~~v~  200 (242)
                      ..     .+....+.|..|+.+|.+++|+.|+++||++|+++      .+.+++.+++..|+.+          .++|.-
T Consensus       175 plG~s~~Ge~fNinad~vA~~iA~aL~A~KLI~ltd~~Gi~d------~~g~li~~lt~~ea~~ll~~~~~~~i~~g~~~  248 (441)
T PRK05279        175 PLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGILD------EDGELIRELSPNEAQALLERLEQGDLNSGTAR  248 (441)
T ss_pred             CEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC------CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             646389999866699999999999769988998528876428------99987530799999999975317888845699


Q ss_pred             CHHHHHHHHHCCC-CEEEEECCCCCHH-HHHHCCCCCCCEECCC
Q ss_conf             0999999997499-6999518985479-9997799878246689
Q gi|254780777|r  201 DCASVVLARDCSI-PIIVFSIHSPGGI-WGGLSGIGRSTIISGE  242 (242)
Q Consensus       201 ~~~A~~~a~~~gI-~v~I~ng~~~~~i-~~~l~Ge~~GT~I~~~  242 (242)
                      ++.++-.|-+.|+ .++|.||+.|+.| ..++.-+.+||+|+.+
T Consensus       249 kl~~a~~A~~~GV~RvHiIdg~~~gaLL~ELFT~~GvGTmI~~~  292 (441)
T PRK05279        249 FLRAAVKACRGGVPRSHLISYAEDGALLQELFTRDGIGTQIVME  292 (441)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECC
T ss_conf             99999999983988699756878841887762588718988547


No 67 
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.66  E-value=3.7e-15  Score=113.11  Aligned_cols=226  Identities=21%  Similarity=0.239  Sum_probs=133.9

Q ss_pred             EEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHC---CCCCCCCHHHH--HH
Q ss_conf             99999400368538877-70--89999999999999997699099982365410-2334420---37777540246--78
Q gi|254780777|r    8 RVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-RGSQVVA---ENYLLCERSTV--DS   78 (242)
Q Consensus         8 rIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~-~~~~~~~---~~~~~~~~~~~--~~   78 (242)
                      ||||.+||++|..+... +.  -.+.++.-|++|+++.+.|++++|+||.|-.. .......   ...+..+...+  .+
T Consensus         1 riViALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~l~~~G~~vVitHGNGPQVG~ll~~~~~~~~~~p~~Pld~~~A~s   80 (308)
T cd04235           1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS   80 (308)
T ss_pred             CEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             98999573650899999999999999999999999999869979998699518999999888624678998620464653


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------CCHHHHHHHHH-----------H---
Q ss_conf             8888989999999999976188641134--------------------------00100245665-----------4---
Q gi|254780777|r   79 MGMLSTVINALALDLALRKINVPTVILS--------------------------SIFMPQVCEVF-----------S---  118 (242)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~-----------~---  118 (242)
                      .+..+.+++ ..+...+...+......+                          ..+........           +   
T Consensus        81 QG~IGy~lq-qal~n~l~~~~~~~~v~t~vTqv~Vd~~DpAF~~PtKpIGpfy~~eeA~~l~~~~g~~~~eD~grg~RRV  159 (308)
T cd04235          81 QGMIGYMLQ-QALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV  159 (308)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEE
T ss_conf             059999999-9999999854899845999989998899832238888657775999999999845978974288640578


Q ss_pred             -----------HHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
Q ss_conf             -----------32100001100111112465567-------------776215788888641644665147543512343
Q gi|254780777|r  119 -----------CRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVYSAD  174 (242)
Q Consensus       119 -----------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~d  174 (242)
                                 ......+++.+.+++..+..+++             ..|-|..|+++|..++||.|+++|||+++|-.-
T Consensus       160 VpSP~P~~IvE~~~I~~L~~~g~ivIa~GGGGIPVv~~~~~~~GveAVIDKD~aaa~LA~~l~Ad~liiLTdV~~V~~n~  239 (308)
T cd04235         160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF  239 (308)
T ss_pred             ECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCEECCEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHCC
T ss_conf             66999814546999999997798899828986546824995443110213438889999863898899971641687628


Q ss_pred             CCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             22344444444115999985--------5998140999999997499-699951898547999977998782466
Q gi|254780777|r  175 PRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDCSI-PIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       175 P~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      .  .|+.+.++++|.+|+..        .|+|.=|.+|+--..++|- +++|   ..++.+..+|+| ..||.|.
T Consensus       240 g--~p~q~~L~~it~~e~~~~~~~g~F~~GSM~PKv~Aai~fv~~gg~~a~I---tsl~~~~~al~G-~~GT~I~  308 (308)
T cd04235         240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAII---TSLENAEAALEG-KAGTVIV  308 (308)
T ss_pred             C--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE---CCHHHHHHHHCC-CCCCEEC
T ss_conf             9--9860022148899999999769988898369999999999948987999---989999999679-9995879


No 68 
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.63  E-value=2.6e-14  Score=107.88  Aligned_cols=214  Identities=14%  Similarity=0.125  Sum_probs=128.4

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHC------CCCCCCCHHHHHHHHHH
Q ss_conf             999400368538877708999999999999999769909998236541023-34420------37777540246788888
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG-SQVVA------ENYLLCERSTVDSMGML   82 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~   82 (242)
                      |||+||+.+.+         .+.++++.|+-++..|.++++||||+..... ....+      .+...-+..........
T Consensus         2 VIk~GG~~~~d---------~~~~l~~di~lL~~lGi~~VlVHGgg~qI~~~l~~~gi~~~~~~G~RvTd~~~l~~v~~v   72 (248)
T cd04252           2 VIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKV   72 (248)
T ss_pred             EEEECCHHHHH---------HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             79999177652---------199999999999988995999918987888999986998531388446898999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCH-----HH---HH----HHHHHHHHHCCHHHHCCCCCCCC-----CCCCCCCCC
Q ss_conf             989999999999976188641134001-----00---24----56654321000011001111124-----655677762
Q gi|254780777|r   83 STVINALALDLALRKINVPTVILSSIF-----MP---QV----CEVFSCRNAVSYLSQGKVVIFSG-----GTGNAFLTT  145 (242)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  145 (242)
                      ....+.. +...+...+.+....+...     ..   ..    ....+.......+..+.+|+...     ..+....+.
T Consensus        73 l~~vn~~-lv~~l~~~g~~a~~i~g~~~~a~~~~~~~~g~vG~v~~Vd~~~i~~lL~~g~Ipvispig~~~~G~~~Nvna  151 (248)
T cd04252          73 FLEENLK-LVEALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNA  151 (248)
T ss_pred             HHHHHHH-HHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCCCCEEEECH
T ss_conf             9999999-999999659973860376368886676567843225898299999998589944885147889999898799


Q ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHH----CCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             1578888864164466514754351234322344444444115999----985----59981409999999974996999
Q gi|254780777|r  146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQ----FIE----KGLKVMDCASVVLARDCSIPIIV  217 (242)
Q Consensus       146 D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e----~l~----~G~~v~~~~A~~~a~~~gI~v~I  217 (242)
                      |..|+.+|..++|+.|+++||++|+++.+.      +++.+++.++    +.+    .++|..++.+++-|.+.--.+++
T Consensus       152 D~~A~~iA~aL~A~kLi~ltdv~Gv~d~~g------~~i~~l~~~~~~~~l~~~~~i~~gm~~kl~a~~~~~~~v~r~h~  225 (248)
T cd04252         152 DVAAGELARVLEPLKIVFLNETGGLLDGTG------KKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSS  225 (248)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCC------CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             999999999759998999958830179999------99742788999999987799778636479999999963997189


Q ss_pred             EECCCCCHHH-HHHCCCCCCCEE
Q ss_conf             5189854799-997799878246
Q gi|254780777|r  218 FSIHSPGGIW-GGLSGIGRSTII  239 (242)
Q Consensus       218 ~ng~~~~~i~-~~l~Ge~~GT~I  239 (242)
                      .++..|+.+. .++..+.+||+|
T Consensus       226 i~~~~~~aLL~ELFT~~G~GT~I  248 (248)
T cd04252         226 VSITSPDDLQKELFTHSGAGTLI  248 (248)
T ss_pred             EECCCCCHHHHHHHCCCCCCCCC
T ss_conf             96027866577771599870639


No 69 
>PRK09411 carbamate kinase; Reviewed
Probab=99.61  E-value=2.5e-14  Score=107.95  Aligned_cols=223  Identities=22%  Similarity=0.188  Sum_probs=131.3

Q ss_pred             CEEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-H--HHCCCCCCCCHHH--HH
Q ss_conf             2499999400368538877-70--89999999999999997699099982365410233-4--4203777754024--67
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGS-Q--VVAENYLLCERST--VD   77 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~-~--~~~~~~~~~~~~~--~~   77 (242)
                      ||||||-+||++|..+... +.  -...++.-++.|+.+.+ +++++|.||-|-..... .  ......+..+...  +.
T Consensus         1 Mk~iViALGGNAl~~~g~~~t~e~Q~~~v~~aa~~ia~l~~-~~~vVITHGNGPQVG~l~lq~~a~~~~p~~PLd~~~A~   79 (297)
T PRK09411          1 MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLAR-SYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAE   79 (297)
T ss_pred             CCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             97599976814217999998999999999999999999980-89399984781298999999886326999883034242


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCC---CCCC------CH-----------HHHH-----HHHHHHH------------
Q ss_conf             88888989999999999976188641---1340------01-----------0024-----5665432------------
Q gi|254780777|r   78 SMGMLSTVINALALDLALRKINVPTV---ILSS------IF-----------MPQV-----CEVFSCR------------  120 (242)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~-----------~~~~-----~~~~~~~------------  120 (242)
                      +.+..+.     .++..+...+....   +.+.      +.           +...     ......+            
T Consensus        80 sQG~IGY-----~l~q~L~~~~~~~~V~tvlTQv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrg~RRV  154 (297)
T PRK09411         80 SQGMIGY-----MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRV  154 (297)
T ss_pred             HHHHHHH-----HHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEE
T ss_conf             2069999-----99999984378998579988899889981213899851788799999999975596895269802687


Q ss_pred             -------------HHCCHHHHCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             -------------100001100111112465567----------776215788888641644665147543512343223
Q gi|254780777|r  121 -------------NAVSYLSQGKVVIFSGGTGNA----------FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV  177 (242)
Q Consensus       121 -------------~~~~~~~~~~~~~~~~~~~~~----------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~  177 (242)
                                   ....+++.+.+++..+..+++          ..|-|..++++|..++||.++|+||||++|-.-.  
T Consensus       155 VpSP~P~~IvE~~~Ik~Lv~~g~iVIa~GGGGIPV~~~~~GVeAVIDKD~asalLA~~l~AD~liILTdVd~V~~n~g--  232 (297)
T PRK09411        155 VASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--  232 (297)
T ss_pred             ECCCCCCCEECHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHCCC--
T ss_conf             379998416369999999986987996598870558985352136634177899999729998999746650101389--


Q ss_pred             CCCCCCCCCCCHHHHHH----CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf             44444444115999985----5998140999-999997499699951898547999977998782466
Q gi|254780777|r  178 HASSTRFDSLTYNQFIE----KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS  240 (242)
Q Consensus       178 ~~~ak~i~~is~~e~l~----~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~  240 (242)
                      -|+.+.+++++.+|+..    .|+|.=|..| +++++..|=+++|.   .++.+..+|+|+ .||.||
T Consensus       233 ~p~q~~L~~~t~~el~~~~~~~GSM~PKVeAai~Fv~~~G~~aiIt---sl~~~~~al~G~-~GT~It  296 (297)
T PRK09411        233 TPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIG---ALSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             CCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEC---CHHHHHHHHCCC-CCCEEE
T ss_conf             9243356218999998326798986489999999999579869989---799999996799-987872


No 70 
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662   N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined .   The pathway from glutamate to arginine is:   NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=99.61  E-value=1.1e-14  Score=110.05  Aligned_cols=199  Identities=18%  Similarity=0.231  Sum_probs=123.6

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHH-H----HHC--CCC-----CCCCHHH
Q ss_conf             999940036853887770899999999999999976990-99982365410233-4----420--377-----7754024
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIE-IGIVVGGGNIFRGS-Q----VVA--ENY-----LLCERST   75 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~-vviV~sg~~~~~~~-~----~~~--~~~-----~~~~~~~   75 (242)
                      ||||+||+.+.++       +..++++++++.++..|.+ ++||||||..--.. .    ...  .+.     +.-+..+
T Consensus         2 ~ViK~GG~~~~~~-------~~~~~~~~~~~~l~~~g~~PpviVHGGGp~in~~~~~lgi~~~f~~Gl~G~~~RvTd~~t   74 (254)
T TIGR00761         2 IVIKIGGSAISND-------ELLEEFFSDIAFLRAVGIKPPVIVHGGGPEINELLEALGIEPEFKNGLSGVVFRVTDKET   74 (254)
T ss_pred             EEEEECCEEECCC-------HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCCCEEEECCCHHH
T ss_conf             7898447341041-------246999999999997298553898378526888998328983676688720375278899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH------------HHH--------------HHHHHHHHHCCHHHHC
Q ss_conf             67888889899999999999761886411340010------------024--------------5665432100001100
Q gi|254780777|r   76 VDSMGMLSTVINALALDLALRKINVPTVILSSIFM------------PQV--------------CEVFSCRNAVSYLSQG  129 (242)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------------~~~~~~~~~~~~~~~~  129 (242)
                      +.-........-+..+-..+..++....-++..+.            ...              ...-+......++..+
T Consensus        75 l~v~~~vL~g~vN~~LV~~l~~~g~~A~GL~g~Dg~L~~a~rk~~~~~~~~~~vv~~~~G~VG~~~~Vn~~~~~~Ll~~G  154 (254)
T TIGR00761        75 LEVVEMVLIGDVNKELVALLNKHGINAIGLTGLDGQLFTADRKTASLDKEVIKVVAIDLGYVGEIKKVNKALLEALLKAG  154 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCEEEECCCCHHHHHHHHHCC
T ss_conf             99989998364669999999967992863113577357999878988515768999974841231327889999999649


Q ss_pred             CCCCCCCCC------CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHH-------C
Q ss_conf             111112465------567776215788888641644665147543512343223444444441159-99985-------5
Q gi|254780777|r  130 KVVIFSGGT------GNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY-NQFIE-------K  195 (242)
Q Consensus       130 ~~~~~~~~~------~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~-~e~l~-------~  195 (242)
                      ..|+....-      ..-..+-|..|..+|..++|+.|+++|||+|++...|   ...++|++|+. +|...       .
T Consensus       155 ~~PVi~sla~~~~~g~~lNvNAD~aA~~lA~~L~A~kL~~LtDv~Gi~~~y~---d~~~~i~~l~~D~~~~~l~~~~~i~  231 (254)
T TIGR00761       155 IIPVIASLALTNAEGQALNVNADTAAGELAAALGAEKLVLLTDVPGILNGYP---DKQSLISELPLDEEIEQLIKQGVIK  231 (254)
T ss_pred             CCCEECCCCCCHHCCCEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC---CCCCEECCCCHHHHHHHHHHHHHHC
T ss_conf             8517716658623187770677799999998609953888417403225888---7461402268679999877522231


Q ss_pred             CCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9981409999999974996999
Q gi|254780777|r  196 GLKVMDCASVVLARDCSIPIIV  217 (242)
Q Consensus       196 G~~v~~~~A~~~a~~~gI~v~I  217 (242)
                      |+|.-|+.+|.-|.+.|++-.+
T Consensus       232 gGMipKV~~a~~A~~~Gv~~v~  253 (254)
T TIGR00761       232 GGMIPKVNAALEALESGVKSVI  253 (254)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEC
T ss_conf             5985789999999973888003


No 71 
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.60  E-value=3.8e-14  Score=106.81  Aligned_cols=228  Identities=18%  Similarity=0.220  Sum_probs=136.6

Q ss_pred             EEEEEEEEEEEEECCCCC-CC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH-----CCCCC--CCCHHH
Q ss_conf             499999400368538877-70--8999999999999999769909998236541-0233442-----03777--754024
Q gi|254780777|r    7 KRVLLKVSGEALAGISGF-GV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNI-FRGSQVV-----AENYL--LCERST   75 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~-~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~-~~~~~~~-----~~~~~--~~~~~~   75 (242)
                      |||||-|||++|....+. +.  -...++.-+++|+++.+.|++++|+||-|-. +......     ....+  +.+...
T Consensus         3 k~iViALGGNAll~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vvitHGNGPQVG~l~lq~e~a~~~~~~p~~PLd~~~   82 (316)
T PRK12352          3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV   82 (316)
T ss_pred             CEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             66999767343289999999999999999999999999976996999817816988999999875336789987545541


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCC------C-----------------HHHHHHHHHHHH----------
Q ss_conf             6788888989999999999976188641--1340------0-----------------100245665432----------
Q gi|254780777|r   76 VDSMGMLSTVINALALDLALRKINVPTV--ILSS------I-----------------FMPQVCEVFSCR----------  120 (242)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~-----------------~~~~~~~~~~~~----------  120 (242)
                      +.+.+..+.+++.. +...+...+....  +.+.      +                 +.........-+          
T Consensus        83 A~sQG~IGY~lqqa-l~n~l~~r~~~~vvtvlTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~~gw~~~eD~grG~  161 (316)
T PRK12352         83 ADTQGGIGYLIQQA-LNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY  161 (316)
T ss_pred             HCCCHHHHHHHHHH-HHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCE
T ss_conf             21220899999999-99999763898868998789989898010079987478869999999998668987997489963


Q ss_pred             ----------------HHCCHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCC
Q ss_conf             ----------------100001100111112465567--------------77621578888864164466514754351
Q gi|254780777|r  121 ----------------NAVSYLSQGKVVIFSGGTGNA--------------FLTTDSAAALRASEIGADVILKGTQVDGV  170 (242)
Q Consensus       121 ----------------~~~~~~~~~~~~~~~~~~~~~--------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGi  170 (242)
                                      ....+++.+.+++..+..+++              ..|-|..|+++|..++||.|+|+||||++
T Consensus       162 RRVVpSP~P~~IvE~~~Ik~L~~~g~iVIa~GGGGIPV~~~~~g~l~GVeAVIDKD~asa~LA~~l~AD~liILTdVd~V  241 (316)
T PRK12352        162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV  241 (316)
T ss_pred             EEEECCCCCCCEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCEECCEEEECCCHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf             78747999850405999999997898899847987533762898565431466352788999997099989997356603


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             234322344444444115999985--------5998140999-9999974996999518985479999779987824668
Q gi|254780777|r  171 YSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       171 yt~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      |-.-.+  |+.+.+++++.+|+..        .|+|.=|..| ++..++.|-+++|.+   .+.+..+|+|+ .||.|+.
T Consensus       242 ~~n~gk--p~q~~L~~vt~~e~~~y~~eg~F~~GSM~PKV~Aai~Fve~gg~~aiIts---l~~~~~al~G~-aGT~Ivk  315 (316)
T PRK12352        242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK  315 (316)
T ss_pred             EEECCC--CCHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---HHHHHHHHCCC-CCCEEEE
T ss_conf             540899--65113530899999999876999888837999999999994798699897---89999996799-9867940


No 72 
>PRK12354 carbamate kinase; Reviewed
Probab=99.57  E-value=1.3e-13  Score=103.52  Aligned_cols=228  Identities=22%  Similarity=0.205  Sum_probs=133.0

Q ss_pred             EEEEEEEEEEEECCC-CCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH---HHCCCCCCCCHHH--HHHH
Q ss_conf             999994003685388-7770--899999999999999976990999823654102334---4203777754024--6788
Q gi|254780777|r    8 RVLLKVSGEALAGIS-GFGV--DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ---VVAENYLLCERST--VDSM   79 (242)
Q Consensus         8 rIViKiGGSsL~~~~-~~~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~---~~~~~~~~~~~~~--~~~~   79 (242)
                      ||||-+||++|..+. +.+.  -.+.++.-+++|+++.+ |++++|.||-|-......   .........+...  +.+.
T Consensus         2 riViALGGNAll~~g~~~t~~~Q~~~v~~aa~~ia~l~~-g~~vvitHGNGPQVG~i~l~~~~~~~~p~~PLd~~~A~SQ   80 (302)
T PRK12354          2 RIVIALGGNALLRRGEPMTAENQRANIRIAAEQIAKIAP-GNEVVIVHGNGPQVGLLALQNAAYKAVPPYPLDVLGAETE   80 (302)
T ss_pred             EEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf             499982735317999999999999999999999999975-9959998278168899999877416899988267645211


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC-----------------HHHHHHHHH---------HHH--------
Q ss_conf             8889899999999999761886411-----3400-----------------100245665---------432--------
Q gi|254780777|r   80 GMLSTVINALALDLALRKINVPTVI-----LSSI-----------------FMPQVCEVF---------SCR--------  120 (242)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------------~~~~~~~~~---------~~~--------  120 (242)
                      +..+.+++..+...........+.+     ...+                 +........         ..|        
T Consensus        81 G~IGY~lqqaL~n~l~~~k~v~tvvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrG~RRVVpSP~P  160 (302)
T PRK12354         81 GMIGYMLEQELGNLLPFERPVATLLTQVEVDANDPAFANPTKPIGPVYSEEEAERLAAEKGWVIKPDGDKFRRVVPSPKP  160 (302)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEECCCCC
T ss_conf             69999999999987556998699986899889984534899860788699999999997498871158803686379998


Q ss_pred             -------HHCCHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             -------100001100111112465567--------------77621578888864164466514754351234322344
Q gi|254780777|r  121 -------NAVSYLSQGKVVIFSGGTGNA--------------FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHA  179 (242)
Q Consensus       121 -------~~~~~~~~~~~~~~~~~~~~~--------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~  179 (242)
                             ....+++.+.+++..+..+++              ..|-|..|+++|..++||.|+|+||||+||-.--+  |
T Consensus       161 ~~IvE~~~Ik~L~~~g~iVIa~GGGGIPVv~~~~g~l~GveAVIDKD~aaa~LA~~l~AD~liILT~Vd~V~~n~gk--p  238 (302)
T PRK12354        161 KRIVEIRAIKWLLEKGHIVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGK--P  238 (302)
T ss_pred             CEEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCEECCEEEECCCHHHHHHHHHHCCCEEEEEECCCHHHHCCCC--C
T ss_conf             55564999999997899899847886013986899686504566340788999987099989998565422024899--6


Q ss_pred             CCCCCCCCCHHHHHHC----CCCCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECCC
Q ss_conf             4444441159999855----998140999-99999749969995189854799997799878246689
Q gi|254780777|r  180 SSTRFDSLTYNQFIEK----GLKVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE  242 (242)
Q Consensus       180 ~ak~i~~is~~e~l~~----G~~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~~  242 (242)
                      +.+.++++|.+|+...    |+|.=|..| ++.+...|=..+|.   .++.+..+|+|+ .||.|+||
T Consensus       239 ~q~~l~~~t~~el~~~~F~~GSM~PKVeAai~Fv~~~g~~aiIt---sl~~~~~al~G~-~GT~I~p~  302 (302)
T PRK12354        239 TQRPLAQATPDELRELGFAAGSMGPKVEAACEFVEATGGIAGIG---SLADILAILAGE-AGTRISPE  302 (302)
T ss_pred             CHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEC---CHHHHHHHHCCC-CCCEECCC
T ss_conf             60023148899997379998883699999999998279879989---799999996799-99686889


No 73 
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.55  E-value=2.1e-13  Score=102.31  Aligned_cols=228  Identities=22%  Similarity=0.284  Sum_probs=139.0

Q ss_pred             EEEEEEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--C----CCCCCCCHHHHH
Q ss_conf             49999940036853887---77089999999999999997699099982365410233442--0----377775402467
Q gi|254780777|r    7 KRVLLKVSGEALAGISG---FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV--A----ENYLLCERSTVD   77 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~---~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~--~----~~~~~~~~~~~~   77 (242)
                      +||||-+||++|....+   ...-.+.+..-+++|+.+.++|++++|.||-|-.......-  .    ...+..+...+.
T Consensus         1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~   80 (312)
T COG0549           1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV   80 (312)
T ss_pred             CEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             91899935345347999989899999999999999999855885999718975677999876653254578886468886


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHCCC---CCCCCC-----------------------CHHHHHHHH-------------
Q ss_conf             8--88889899999999999761886---411340-----------------------010024566-------------
Q gi|254780777|r   78 S--MGMLSTVINALALDLALRKINVP---TVILSS-----------------------IFMPQVCEV-------------  116 (242)
Q Consensus        78 ~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~-------------  116 (242)
                      +  .+..+.+ +...+...+...+..   ..+.+.                       .+.......             
T Consensus        81 AmsQG~IGy~-l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~  159 (312)
T COG0549          81 AMSQGMIGYM-LQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGY  159 (312)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCE
T ss_conf             7301289999-999999776425877742699999997689844359998777876999999988663967865499873


Q ss_pred             ------------HHHHHHCCHHHHCCCCCCCCCCCCC-------------CCCCHHHHHHHHHHHCHHHHHHCCCCCCCC
Q ss_conf             ------------5432100001100111112465567-------------776215788888641644665147543512
Q gi|254780777|r  117 ------------FSCRNAVSYLSQGKVVIFSGGTGNA-------------FLTTDSAAALRASEIGADVILKGTQVDGVY  171 (242)
Q Consensus       117 ------------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~D~~a~~ia~~~~ad~l~i~tdvdGiy  171 (242)
                                  .-......+++.+.+++..+..+++             ..|-|..++++|..++||.|+|+||||++|
T Consensus       160 RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy  239 (312)
T COG0549         160 RRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVY  239 (312)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHE
T ss_conf             68149999712031788999986798899957887444861897310368981187789999871589899985465111


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHH-HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEECC
Q ss_conf             34322344444444115999985--------599814099-99999974996999518985479999779987824668
Q gi|254780777|r  172 SADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCA-SVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG  241 (242)
Q Consensus       172 t~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~-A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~~  241 (242)
                      -.=.  -|+.+.+++++.+|+-.        .|+|.=|+. |+.++++-|=+++|.+   .+++..+|+|+ .||.|.+
T Consensus       240 ~n~g--kp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~FV~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~  312 (312)
T COG0549         240 VNFG--KPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP  312 (312)
T ss_pred             ECCC--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECC---HHHHHHHHCCC-CCCEECC
T ss_conf             1279--955112224699999999864798888731889999999984798369775---98889986467-8858519


No 74 
>TIGR00746 arcC carbamate kinase; InterPro: IPR003964   The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes. The three- enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 100f total cell protein .   Carbamate kinase is involved in the last step of the AD pathway, converting carbamoyl phosphate and ADP into ammonia, carbon dioxide and ATP . The second step of the pathway involves the degradation of L-citrulline to carbamoyl phosphate and L-ornithine, using ornithine carbamoyltransferase .    The crystal structure of Enterococcus faecium carbamate kinase has been determined to 2.8A resolution . The enzyme exists as a homodimer of two 33kDa subunits. The hallmark of the dimer is a 16-stranded beta-sheet, surrounded by alpha-helices. Each subunit contains an active site within a large crevice.; GO: 0008804 carbamate kinase activity, 0006525 arginine metabolic process.
Probab=99.47  E-value=5.4e-13  Score=99.76  Aligned_cols=229  Identities=20%  Similarity=0.215  Sum_probs=142.7

Q ss_pred             EEEEEEEEEEEEEC-CCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHH----HHC---CCCCCCCHHH
Q ss_conf             49999940036853-887770--89999999999999997699099982365-4102334----420---3777754024
Q gi|254780777|r    7 KRVLLKVSGEALAG-ISGFGV--DIDSVNRICADIAEVYAKGIEIGIVVGGG-NIFRGSQ----VVA---ENYLLCERST   75 (242)
Q Consensus         7 KrIViKiGGSsL~~-~~~~~~--~~~~i~~ia~~I~~~~~~g~~vviV~sg~-~~~~~~~----~~~---~~~~~~~~~~   75 (242)
                      |||||=|||+.|-. .+.-+.  =.+.++.=+.+|+++.++|+++||+||=| ..+.+..    ..+   ....+++-.-
T Consensus         1 k~~VvALGGNAlLqRg~~~s~~~Q~~nv~~t~~~l~~~~~~G~~lvi~HGNGPQVG~LlLQ~~A~~~~~~~~~~PLDV~G   80 (321)
T TIGR00746         1 KRVVVALGGNALLQRGEKGSAENQRKNVEQTAPQLVKLIKRGYELVITHGNGPQVGLLLLQNQAADSEKVVPAMPLDVLG   80 (321)
T ss_pred             CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf             94889737358863788379889999999999999999861897999847803688899999897603788988743202


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----------------------CCCHHHHHH-----H------------
Q ss_conf             678888898999999999997618864113-----------------------400100245-----6------------
Q gi|254780777|r   76 VDSMGMLSTVINALALDLALRKINVPTVIL-----------------------SSIFMPQVC-----E------------  115 (242)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-----~------------  115 (242)
                      +.+.+.-+-++.. .+...+...|....+.                       +.++.....     +            
T Consensus        81 AmSQG~IGYml~q-~l~~~L~~~g~~~~vaT~~TQt~VD~~DpAF~nPTKpiGPfY~e~EAk~~~a~~~g~~~ke~tdGD  159 (321)
T TIGR00746        81 AMSQGMIGYMLQQ-ALNNELPKEGLEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYDEEEAKKRLAAEKGWIVKEDTDGD  159 (321)
T ss_pred             CCCCCHHHHHHHH-HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCC
T ss_conf             0335307899999-999999866899985389998888888888785497516888989999999861787004788876


Q ss_pred             ----------------HHHHHHHCCHHHHCCCCCCCCCCCCC---------------CCCCHHHHHHHHHHHCHHHHHHC
Q ss_conf             ----------------65432100001100111112465567---------------77621578888864164466514
Q gi|254780777|r  116 ----------------VFSCRNAVSYLSQGKVVIFSGGTGNA---------------FLTTDSAAALRASEIGADVILKG  164 (242)
Q Consensus       116 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~D~~a~~ia~~~~ad~l~i~  164 (242)
                                      ..-......+++.+.++++.+..|+|               .+|=|.-+.+||..++||.|+|+
T Consensus       160 ~g~gwRrVVPSP~P~~I~E~~~Ik~L~e~g~iVI~~GGGGvPv~~dg~~kkl~GVeAVIDKDlA~~~LA~~~~AD~L~IL  239 (321)
T TIGR00746       160 DGRGWRRVVPSPRPKDIVEAEVIKTLVENGVIVICSGGGGVPVVEDGAEKKLKGVEAVIDKDLASEKLAEEVNADILVIL  239 (321)
T ss_pred             CCCCCEEECCCCCCCCCEECHHHHHHHHCCEEEEEECCCCEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEE
T ss_conf             77830376579999663120778998648827998578820356628943022011032366888988877438744310


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--------CCCCCCHH-HHHHHHHCCC-CEEEEECCCCCHHHHHHCCCC
Q ss_conf             7543512343223444444441159999855--------99814099-9999997499-699951898547999977998
Q gi|254780777|r  165 TQVDGVYSADPRVHASSTRFDSLTYNQFIEK--------GLKVMDCA-SVVLARDCSI-PIIVFSIHSPGGIWGGLSGIG  234 (242)
Q Consensus       165 tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~--------G~~v~~~~-A~~~a~~~gI-~v~I~ng~~~~~i~~~l~Ge~  234 (242)
                      ||||.+|-.=- + |+-|.+.+++.+|+..+        |||.=|++ |++++...|= +.+|.   .+.++..+|.|+-
T Consensus       240 TDVd~vy~nyg-k-P~e~~L~~~~~~El~~~~~~G~Fa~GSMgPKV~AaI~Fv~~~G~~~AiIt---~L~~~~~~l~g~i  314 (321)
T TIGR00746       240 TDVDAVYVNYG-K-PDEKKLREVTVEELEDYEKDGHFAAGSMGPKVEAAIEFVESRGKKRAIIT---SLETAVEALEGKI  314 (321)
T ss_pred             HHHHHHHHCCC-C-HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEC---CHHHHHHHHCCCE
T ss_conf             20124522077-8-24788724698899999855886688986038999899871888740005---8589998646973


Q ss_pred             CCCEECC
Q ss_conf             7824668
Q gi|254780777|r  235 RSTIISG  241 (242)
Q Consensus       235 ~GT~I~~  241 (242)
                      .||.|++
T Consensus       315 aGT~v~~  321 (321)
T TIGR00746       315 AGTRVSK  321 (321)
T ss_pred             EEEEEEC
T ss_conf             2214509


No 75 
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.45  E-value=6e-12  Score=93.27  Aligned_cols=209  Identities=11%  Similarity=0.014  Sum_probs=125.5

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             82499999400368538877708999999999999999769909998236541023344203777754024678888898
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLST   84 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (242)
                      .++=+|||+||++|.+       .+.++.++..++-|++-|-..+||||||...      .....   ....... ....
T Consensus        34 ~~~faVIKvGGaVl~d-------~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i------~~~~~---~~~~~~~-~~v~   96 (271)
T cd04236          34 WPAFAVLEVDHSVFRS-------LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPD------GTNMS---DLELQAA-RSRL   96 (271)
T ss_pred             CCCEEEEEECHHHEEC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCHHC------CCCCC---CHHHHHH-HHHH
T ss_conf             7876999988131505-------8899999999999998899489993897011------55746---0122567-6663


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-H-----------HHHHHHHCCHHHHCCCCCCCCCC-----CCCCCCCHH
Q ss_conf             999999999997618864113400100245-6-----------65432100001100111112465-----567776215
Q gi|254780777|r   85 VINALALDLALRKINVPTVILSSIFMPQVC-E-----------VFSCRNAVSYLSQGKVVIFSGGT-----GNAFLTTDS  147 (242)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~  147 (242)
                      ......+-.++...|......+........ +           ..+.......++.+.+|+.....     ..-....|+
T Consensus        97 ~~~n~~lV~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIaplG~~~~Gq~~NINADt  176 (271)
T cd04236          97 VKDCKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSE  176 (271)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECCCEECCCCCEEEECHHH
T ss_conf             79999999999976996245416873377225301376687138607999999978997188252378999888775899


Q ss_pred             HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----C----CCCCCCHHHHHHHH---HCCCCEE
Q ss_conf             78888864164466514754351234322344444444115999985----5----99814099999999---7499699
Q gi|254780777|r  148 AAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----K----GLKVMDCASVVLAR---DCSIPII  216 (242)
Q Consensus       148 ~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----~----G~~v~~~~A~~~a~---~~gI~v~  216 (242)
                      .|..+|..+.|+.++++||++|+++.+      .++|++++..+.++    .    +++..+...++.+.   .++..+.
T Consensus       177 aA~aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~~l~~~~~i~~~~~~~i~~i~~~l~~l~~~~s~v  250 (271)
T cd04236         177 VTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAV  250 (271)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             999999864876799980787407789------98822016188999987076512352674778999997177873699


Q ss_pred             EEECCCCC-HHHHHHCCCCCCCEE
Q ss_conf             95189854-799997799878246
Q gi|254780777|r  217 VFSIHSPG-GIWGGLSGIGRSTII  239 (242)
Q Consensus       217 I~ng~~~~-~i~~~l~Ge~~GT~I  239 (242)
                      |.+   |. -+..++.-+..||++
T Consensus       251 i~~---phsll~ELFTd~G~GTLf  271 (271)
T cd04236         251 ITS---AETLLTELFSHKGSGTLF  271 (271)
T ss_pred             EEC---HHHHHHHHHCCCCCCCCC
T ss_conf             837---568789986389877788


No 76 
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.24  E-value=2.7e-10  Score=83.06  Aligned_cols=217  Identities=16%  Similarity=0.169  Sum_probs=120.9

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HC------CCCCCCCHHHHH
Q ss_conf             82499999400368538877708999999999999999769909998236541023344-20------377775402467
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV-VA------ENYLLCERSTVD   77 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~-~~------~~~~~~~~~~~~   77 (242)
                      .+|-.|||+||+++.+         .++++|..++-|+.-|...|||||||........ .+      .+...-+.....
T Consensus        19 ~~~fAVIKvGGavi~e---------~l~~la~dLafL~~vGl~PVVVHGgGpqI~~~L~~~gIe~~fi~G~RVTd~etl~   89 (421)
T PRK04531         19 PERFAVIKVGGAVLRE---------DLEALTSSLKFLQEVGLTPVVVHGAGPQLDAELSAAGIEKDTVNGLRVTSPEALA   89 (421)
T ss_pred             CCEEEEEEECHHHHHH---------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf             7618999988799997---------9999999999999879979999389877879999759997677963058888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH------------HHHHHHHHHCCHHHHCCCCCCCCCCC-----C
Q ss_conf             888889899999999999761886411340010024------------56654321000011001111124655-----6
Q gi|254780777|r   78 SMGMLSTVINALALDLALRKINVPTVILSSIFMPQV------------CEVFSCRNAVSYLSQGKVVIFSGGTG-----N  140 (242)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  140 (242)
                      -........ ...+-..+...|......+.......            ....+.......++.+.+|++.....     .
T Consensus        90 vv~~vl~~~-n~~lV~~L~~~G~~A~~i~g~~~~a~~~d~~~~G~VG~V~~Vd~~~I~~~L~~g~IPVIapig~~~~Gq~  168 (421)
T PRK04531         90 IVRKVFQAS-NLKLVEALQQNGARATSITGGVFEAEYLDRDTYGLVGEVKAVLLAAVRSSLRAGKIPVIASLGETPSGQI  168 (421)
T ss_pred             HHHHHHHHH-HHHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECCCEECCCCCE
T ss_conf             999999765-2999999996799757346654350336666676433347786899999997898269815315899978


Q ss_pred             CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--------CCCCCCCHHHHHHHHHC-
Q ss_conf             777621578888864164466514754351234322344444444115999985--------59981409999999974-
Q gi|254780777|r  141 AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE--------KGLKVMDCASVVLARDC-  211 (242)
Q Consensus       141 ~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~--------~G~~v~~~~A~~~a~~~-  211 (242)
                      -....|..|+.+|.++.|+.++++|+..|+++.+      .++|..|+.++..+        ..++-+|++-++...++ 
T Consensus       169 lNINAD~aA~aLA~aL~a~KlIfLt~~gGi~d~~------gk~Is~InL~~eyd~lm~~~w~~~g~klkl~~ik~LLd~L  242 (421)
T PRK04531        169 LNINADVAANELVSILQPYKIIFLTGTGGLLDAD------GNKISSINLSTEFDQLMQQPSINGGMRLKLEQIKDLLDRL  242 (421)
T ss_pred             EEECHHHHHHHHHHHCCCCEEEEECCCCCEECCC------CCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             8405999999999862864699971678606789------9886357544035545205103566899899999998519


Q ss_pred             --CCCEEEEECCCCCHHHHHH-CCCCCCCEEC
Q ss_conf             --9969995189854799997-7998782466
Q gi|254780777|r  212 --SIPIIVFSIHSPGGIWGGL-SGIGRSTIIS  240 (242)
Q Consensus       212 --gI~v~I~ng~~~~~i~~~l-~Ge~~GT~I~  240 (242)
                        .-.|.|.   .|.+|.+=| .-..-||+|.
T Consensus       243 P~~SSV~It---~p~~L~kELFT~~GsGTLir  271 (421)
T PRK04531        243 PLESSVSIT---SPSDLAKELFTHKGSGTLVR  271 (421)
T ss_pred             CCCCEEEEE---CHHHHHHHHCCCCCCCEEEE
T ss_conf             986607870---89998887626799960486


No 77 
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro: IPR010167   This entry represents a clade of amino-acid N-acetyltransferases, or N-acetylglutamate synthase, which is the product of the argA gene and the first enzyme in arginine biosynthesis. This enzyme displays more diversity between bacteria, fungi and mammals than other enzymes in arginine metabolism, and N-acetylglutamate itself can have different roles in different taxonomic groups: in prokaryotes, lower eukaryotes and plants it is the first intermediate in arginine biosynthesis, while in vertebrates it is an allosteric cofactor for the first enzyme in the urea cycle . In bacteria, arginine can regulate ornithine biosynthesis via a feedback inhibition mechanism . This enzyme may also act on aspartate.; GO: 0004042 amino-acid N-acetyltransferase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=98.86  E-value=2.7e-07  Score=64.61  Aligned_cols=221  Identities=16%  Similarity=0.172  Sum_probs=132.1

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-------HHCCCCCCCCHHHHHHH
Q ss_conf             49999940036853887770899999999999999976990999823654102334-------42037777540246788
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ-------VVAENYLLCERSTVDSM   79 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~-------~~~~~~~~~~~~~~~~~   79 (242)
                      |+.|+=|||..+.+++        +.+++..|+=|+.-|.++|+|||+-.+.....       ...++...-|...+...
T Consensus        18 KT~Vvgl~g~~v~~~~--------l~~~v~Di~LLh~LGv~lVLvHGaRPq~~~~la~~~~~p~Y~~G~RvTD~asLe~~   89 (439)
T TIGR01890        18 KTFVVGLGGELVEDDN--------LGNIVADIALLHSLGVRLVLVHGARPQIEERLAARGRTPHYHRGLRVTDEASLELV   89 (439)
T ss_pred             CEEEEECCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHH
T ss_conf             6699842840014444--------24599999999758918999708852689999962897870322571356567789


Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCCC-----CC-----CCCCHHHHH----------HHHHHHHHHCCHHHHCCCCCCC---
Q ss_conf             8889899999999999761-8864-----11-----340010024----------5665432100001100111112---
Q gi|254780777|r   80 GMLSTVINALALDLALRKI-NVPT-----VI-----LSSIFMPQV----------CEVFSCRNAVSYLSQGKVVIFS---  135 (242)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~-----~~-----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~---  135 (242)
                      ...+-.+....-+...... +.|-     .+     .+.-+....          .+..........+....++...   
T Consensus        90 ~~aaG~lr~~ieA~Ls~~~~~~pmaGsr~~vvSGNfvtArPiGv~~GvDy~h~G~vRk~D~~~i~~~Ld~g~IVLL~PLG  169 (439)
T TIGR01890        90 KQAAGELRLAIEARLSMSLSNTPMAGSRLSVVSGNFVTARPIGVIEGVDYEHTGVVRKIDTEGIRRLLDAGSIVLLSPLG  169 (439)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCEEECCCCCEECCCEEHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             99876688888888752124678888531356243332033101058662032745110088898652078767517654


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH----CCCCC----------
Q ss_conf             --46556777621578888864164466514754351234322344444444115999985----59981----------
Q gi|254780777|r  136 --GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE----KGLKV----------  199 (242)
Q Consensus       136 --~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~----~G~~v----------  199 (242)
                        ...+.+.-+....|+.+|..++||.|+++|..+|+.+      ++.+++.++++.|+..    ++..-          
T Consensus       170 ~S~tG~~FnL~~e~vAt~~A~~L~AdKL~~~t~~~Gi~d------~~G~l~~eL~pq~~~~~~~~l~~~~aPdde~~~~~  243 (439)
T TIGR01890       170 YSPTGEIFNLDMEDVATSVAIELKADKLIYFTEEPGILD------ADGKLVAELSPQEVESLVERLGEETAPDDELSADT  243 (439)
T ss_pred             CCCCCHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC------CCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             366400004406889999998625540454058887246------56524232487899999998505789733322558


Q ss_pred             CC-HHHHHHHHHCCC-CEEEEECCCCCHHHH-HHCCCCCCCEECC
Q ss_conf             40-999999997499-699951898547999-9779987824668
Q gi|254780777|r  200 MD-CASVVLARDCSI-PIIVFSIHSPGGIWG-GLSGIGRSTIISG  241 (242)
Q Consensus       200 ~~-~~A~~~a~~~gI-~v~I~ng~~~~~i~~-~l~Ge~~GT~I~~  241 (242)
                      +. +.+|--|.+-|+ .++|.|+...|.|.. .+.=..+||.|+.
T Consensus       244 ~~lL~~a~~A~~GGV~R~hlv~ya~DGsLL~ELF~~~G~GT~v~~  288 (439)
T TIGR01890       244 ARLLSAAVKACRGGVRRSHLVSYAEDGSLLQELFTRDGIGTLVSK  288 (439)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             999999999986797514422623225899999861893037888


No 78 
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039   This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases  are present in this subfamily..
Probab=91.64  E-value=0.4  Score=26.51  Aligned_cols=48  Identities=17%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             CEEEEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             24999994003685388-77708999999999999999769909998236
Q gi|254780777|r    6 YKRVLLKVSGEALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGG   54 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg   54 (242)
                      |||+|+-+=++.=..++ .| .+..=+..+.+++.+.++.|.+++|.+|-
T Consensus         1 MK~lv~DLD~TIT~~~~~DY-~N~~P~~~Vi~~L~~YK~lGF~i~IsssR   49 (126)
T TIGR01689         1 MKRLVMDLDNTITLTENGDY-ANVKPIKAVIEKLREYKALGFEIVISSSR   49 (126)
T ss_pred             CCEEEEECCCCEEECCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             94478743783631257873-23550689999999887468789886565


No 79 
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain.   Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function.  During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=86.93  E-value=1.4  Score=23.14  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             EEEEECCCCC-CCC-HHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             0368538877-708-9999999999999997699099982
Q gi|254780777|r   15 GEALAGISGF-GVD-IDSVNRICADIAEVYAKGIEIGIVV   52 (242)
Q Consensus        15 GSsL~~~~~~-~~~-~~~i~~ia~~I~~~~~~g~~vviV~   52 (242)
                      .+.+.|-+.+ +.| ...+..+-+.++++++.|+.|+.+.
T Consensus       100 ~~~~~DL~~~~g~dG~~~l~~~~~AL~~Fk~SgKpv~ay~  139 (614)
T TIGR00705       100 EGLVLDLKNFEGVDGSPALSEIGKALSEFKDSGKPVYAYG  139 (614)
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8999733323576677327988999999985699089985


No 80 
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=85.30  E-value=0.93  Score=24.27  Aligned_cols=18  Identities=33%  Similarity=0.599  Sum_probs=11.6

Q ss_pred             HHHHHHCCCEEEEEECCC
Q ss_conf             999997699099982365
Q gi|254780777|r   38 IAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus        38 I~~~~~~g~~vviV~sg~   55 (242)
                      |..+++.|.++.++||..
T Consensus        60 i~~l~~~Gi~v~iISg~~   77 (186)
T PRK09484         60 IRCLLTSGIEVAIITGRK   77 (186)
T ss_pred             HHHHHHCCCEEEEEECCC
T ss_conf             999998799699994788


No 81 
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.79  E-value=2.6  Score=21.49  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             968882499999400368538877708999999999999999769909998236
Q gi|254780777|r    1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG   54 (242)
Q Consensus         1 m~~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg   54 (242)
                      |-+|++|-|+.-+=|+.|.++  +.+.     ..-+.|.+++++|+.++++||-
T Consensus         1 ~~~M~~~LI~tDlDGTLL~~~--~~~~-----~~~~ai~~l~~~Gi~vviaTGR   47 (275)
T PRK00192          1 MIDMSKLLVFTDLDGTLLDHT--YDWE-----PAKPTLKALKEKGIPVIPCTSK   47 (275)
T ss_pred             CCCCCCEEEEEECCCCCCCCC--CCCC-----HHHHHHHHHHHCCCEEEEECCC
T ss_conf             988884699994857784899--9836-----8999999999789999996898


No 82 
>PRK10530 phosphotransferase; Provisional
Probab=80.86  E-value=3.4  Score=20.78  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             8824999994003685388777089999999999999997699099982365
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      |+||-|+.=+=|+.|.++..  +....    .+.|.+++++|+++++.+|-.
T Consensus         1 M~~KlIa~DlDGTLl~~~~~--i~~~~----~~ai~~l~~~Gi~~~iaTGR~   46 (272)
T PRK10530          1 MTYRVIALDLDGTLLTPKKT--ILPSS----LEALARAREAGYQLIIVTGRH   46 (272)
T ss_pred             CCCCEEEEECCCCCCCCCCC--CCHHH----HHHHHHHHHCCCEEEEECCCC
T ss_conf             99529999087363589895--99999----999999997899999995998


No 83 
>KOG2436 consensus
Probab=73.44  E-value=6.9  Score=18.92  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCC-------CCCCHHHHHHH
Q ss_conf             49999940036853887770899999999999999976990999823654102334420377-------77540246788
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY-------LLCERSTVDSM   79 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~-------~~~~~~~~~~~   79 (242)
                      |-+|+|-|+.. .+        +....+++.++-++..|...++|++.+...-.+.......       ...+...++..
T Consensus        96 ~fvV~~~g~~~-~t--------~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~  166 (520)
T KOG2436          96 KFVVIKSGEAI-ST--------SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAA  166 (520)
T ss_pred             EEEEEECCCCC-CC--------CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCEECCCHHHHHHH
T ss_conf             07999435435-56--------3588998777887507736888438627777899972888300363102618888776


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HHHH---H--------------HHHHHHCCHHHHCCCCCC--CCC
Q ss_conf             88898999999999997618864113400100---2456---6--------------543210000110011111--246
Q gi|254780777|r   80 GMLSTVINALALDLALRKINVPTVILSSIFMP---QVCE---V--------------FSCRNAVSYLSQGKVVIF--SGG  137 (242)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~--------------~~~~~~~~~~~~~~~~~~--~~~  137 (242)
                      ....+.....-+...+..+|......+.....   ...+   .              ..+.........+.++..  .+.
T Consensus       167 ~~~~~~E~n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~  246 (520)
T KOG2436         167 KESVSLEANLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAA  246 (520)
T ss_pred             HHCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEECHHHHHHHHHCCCCHHEHHHCC
T ss_conf             53130021567999999754010331256644304423523455400022003300311524235652798221110113


Q ss_pred             C--C-CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             5--5-67776215788888641644665147543512343223
Q gi|254780777|r  138 T--G-NAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV  177 (242)
Q Consensus       138 ~--~-~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~  177 (242)
                      +  + .-....|..|.-+|..+.++.+++++|..-+...+|..
T Consensus       247 TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~  289 (520)
T KOG2436         247 TASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGED  289 (520)
T ss_pred             CCCCCEEEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             6766168751787766887435840068750455424557555


No 84 
>PRK10513 sugar phosphatase; Provisional
Probab=71.32  E-value=7.7  Score=18.62  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             8824999994003685388777089999999999999997699099982365
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      |++|-|+.=+=|+.|.++..  +..    +..+.|.+++++|+.+++.+|-.
T Consensus         1 M~iKli~~DlDGTLl~~~~~--i~~----~~~~ai~~l~~~Gi~~~iaTGR~   46 (270)
T PRK10513          1 MAIKLIAIDMDGTLLLPDHT--ISP----AVKNAIAAARAKGVNVVLTTGRP   46 (270)
T ss_pred             CCCCEEEEECCCCCCCCCCC--CCH----HHHHHHHHHHHCCCEEEEECCCC
T ss_conf             98429999366252589796--899----99999999997899999997998


No 85 
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415   This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=68.40  E-value=8.9  Score=18.23  Aligned_cols=122  Identities=13%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf             9940036853887770899999999999999976990999823654102334420377775-402467888889899999
Q gi|254780777|r   11 LKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLC-ERSTVDSMGMLSTVINAL   89 (242)
Q Consensus        11 iKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   89 (242)
                      +..||.+.+      ++....+++-+...+++++|.+|+.|.-=      +...+...+.. ..++.+ +          
T Consensus       473 ~r~gg~vv~------L~e~~~~~l~~~t~~~NrqG~RV~avAtk------~l~~~e~~Pt~~~~DE~~-l----------  529 (892)
T TIGR01524       473 VREGGAVVA------LDESEKERLKDVTEELNRQGLRVVAVATK------KLDASEADPTYSKEDEEE-L----------  529 (892)
T ss_pred             CCCCCCEEC------CCHHHHHHHHHHHHHHCCCCCEEEEEEEE------ECCCCCCCCCCCEECHHH-H----------
T ss_conf             011880303------76257899999998743278578767763------046788886641307778-8----------


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH--CHHHHHHCCCC
Q ss_conf             9999997618864113400100245665432100001100111112465567776215788888641--64466514754
Q gi|254780777|r   90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEI--GADVILKGTQV  167 (242)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~--~ad~l~i~tdv  167 (242)
                       ....+..+-.|..-.            -......+...+..+.+      --|||.-.++.+=.++  +|..+++.+||
T Consensus       530 -iieG~l~FlDPpKes------------t~~AiaaL~~ngi~VKv------LTGDne~VtariC~EVGida~d~l~G~di  590 (892)
T TIGR01524       530 -IIEGYLAFLDPPKES------------TKKAIAALKKNGIAVKV------LTGDNEVVTARICLEVGIDANDVLLGADI  590 (892)
T ss_pred             -HHHHHHHCCCCCHHH------------HHHHHHHHHHCCCEEEE------EECCCHHHHHHHCCCCCCCCCCEEECCCH
T ss_conf             -899776406880101------------79999999857978999------61886578732110045576775753234


Q ss_pred             CCCCCCC
Q ss_conf             3512343
Q gi|254780777|r  168 DGVYSAD  174 (242)
Q Consensus       168 dGiyt~d  174 (242)
                      +++=|+.
T Consensus       591 E~lSD~e  597 (892)
T TIGR01524       591 EELSDEE  597 (892)
T ss_pred             HHCCHHH
T ss_conf             3226799


No 86 
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=65.74  E-value=4  Score=20.36  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=16.4

Q ss_pred             HHHHHHHCCCEEEEEECCCCC
Q ss_conf             999999769909998236541
Q gi|254780777|r   37 DIAEVYAKGIEIGIVVGGGNI   57 (242)
Q Consensus        37 ~I~~~~~~g~~vviV~sg~~~   57 (242)
                      -|+.+.+.|.++.|.+|--+.
T Consensus        43 Gik~l~~~Gi~vAIITGr~s~   63 (170)
T COG1778          43 GIKLLLKSGIKVAIITGRDSP   63 (170)
T ss_pred             HHHHHHHCCCEEEEEECCCCH
T ss_conf             999999859928999678787


No 87 
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=64.69  E-value=8.5  Score=18.35  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCCHH
Q ss_conf             99999999976990999823654102
Q gi|254780777|r   34 ICADIAEVYAKGIEIGIVVGGGNIFR   59 (242)
Q Consensus        34 ia~~I~~~~~~g~~vviV~sg~~~~~   59 (242)
                      +-+-|+.|+++|++|+++|||-..+.
T Consensus        91 ~~Elv~~L~~~gykVav~SGGF~~~a  116 (223)
T TIGR00338        91 AEELVKTLKEKGYKVAVISGGFDLFA  116 (223)
T ss_pred             HHHHHHHHHHCCEEEEEEECCHHHHH
T ss_conf             78999999886907999857768889


No 88 
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=55.58  E-value=11  Score=17.62  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHCHHHHHHCCC-------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
Q ss_conf             5677762157888886416446651475-------------435123432234444444411599998559981409999
Q gi|254780777|r  139 GNAFLTTDSAAALRASEIGADVILKGTQ-------------VDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASV  205 (242)
Q Consensus       139 ~~~~~~~D~~a~~ia~~~~ad~l~i~td-------------vdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~  205 (242)
                      |...|.+...|..+... +  .-++.||             +|-+++-++..+.+|.+|..|.+-..       +++...
T Consensus        19 EVGIG~~~~vA~~L~~~-g--~dv~~tDi~~~av~~gl~~v~DDif~P~~~lY~~A~lIYSIRPp~E-------l~~~i~   88 (127)
T pfam03686        19 EVGIGFFLDVAKRLAER-G--FDVLATDINEKAVPEGLRFVVDDITNPNISIYEGADLIYSIRPPPE-------LQSAIL   88 (127)
T ss_pred             EEECCCCHHHHHHHHHC-C--CCEEEEECCCCCCCCCCCEEECCCCCCCHHHHCCCCEEEECCCCHH-------HHHHHH
T ss_conf             99136888999999985-9--9689997776576678887872588989889558788998189878-------889999


Q ss_pred             HHHHHCCCCEEEEEC
Q ss_conf             999974996999518
Q gi|254780777|r  206 VLARDCSIPIIVFSI  220 (242)
Q Consensus       206 ~~a~~~gI~v~I~ng  220 (242)
                      ++|++.|++++|.--
T Consensus        89 ~lA~~v~a~liI~PL  103 (127)
T pfam03686        89 DVAKAVGAPLYIKPL  103 (127)
T ss_pred             HHHHHCCCCEEEECC
T ss_conf             999981998999848


No 89 
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=55.02  E-value=16  Score=16.75  Aligned_cols=45  Identities=13%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             882499999400368538877708999999999999999769909998236
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG   54 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg   54 (242)
                      |.+|-|+.=+=|+.|.++.  .+.    .+..+.|.+++++|+.+++.+|-
T Consensus         1 MmiKli~~DlDGTLl~~~~--~i~----~~~~~ai~~l~~~Gi~v~iaTGR   45 (226)
T PRK01158          1 MMIKAIVIDIDGTITDPDR--RLH----LKAVEAIRKAEKLGVPVILVTGN   45 (226)
T ss_pred             CCCCEEEEECCCCCCCCCC--CCC----HHHHHHHHHHHHCCCEEEEECCC
T ss_conf             9603899945777646919--719----99999999999889989998999


No 90 
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=54.64  E-value=16  Score=16.71  Aligned_cols=20  Identities=15%  Similarity=-0.155  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHCCCEEEEEEC
Q ss_conf             99999999976990999823
Q gi|254780777|r   34 ICADIAEVYAKGIEIGIVVG   53 (242)
Q Consensus        34 ia~~I~~~~~~g~~vviV~s   53 (242)
                      ....+..++++.+.+++..-
T Consensus        75 ~~~~~~~lr~~~yD~vidlq   94 (322)
T PRK10964         75 RKAFRRALQAEQYDAVIDAQ   94 (322)
T ss_pred             HHHHHHHHHHCCCCEEEECC
T ss_conf             99999998745897999885


No 91 
>KOG1780 consensus
Probab=50.60  E-value=7.7  Score=18.61  Aligned_cols=38  Identities=26%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             EEEEEEEEEEE-EECC-CCCCCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf             49999940036-8538-87770899999999999999976990
Q gi|254780777|r    7 KRVLLKVSGEA-LAGI-SGFGVDIDSVNRICADIAEVYAKGIE   47 (242)
Q Consensus         7 KrIViKiGGSs-L~~~-~~~~~~~~~i~~ia~~I~~~~~~g~~   47 (242)
                      |||++|++|+- ++.- .||   ..+++-+.++.-+....+..
T Consensus        15 Kki~lklnG~r~v~GiLrGy---D~FmNiVlde~vE~~~~~~~   54 (77)
T KOG1780          15 KKIVLKLNGGRKVTGILRGY---DPFMNIVLDETVEPNGDGDK   54 (77)
T ss_pred             HEEEEEECCCCEEEEEEECC---CHHHHHHHHHCEEECCCCCC
T ss_conf             26899947983888887424---56774313420200476874


No 92 
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=50.55  E-value=18  Score=16.31  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             9994003685388777089999999999999997699099982365
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      .+..||+.|-+..=..++....++.|  +..|++.|.+=.||.||-
T Consensus        58 Ii~~GGT~L~tAR~~EFK~~evR~kA--~~nLK~~GI~~LVViGGD  101 (302)
T TIGR02482        58 IISKGGTILGTARCPEFKTEEVREKA--VENLKKLGIEALVVIGGD  101 (302)
T ss_pred             CCCCCCCEEECCCCCCCCCHHHHHHH--HHHHHHHCCCEEEEECCC
T ss_conf             00158833311478545687899999--999887488668998684


No 93 
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=50.31  E-value=7.4  Score=18.74  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             CHHHHHHHHHCCCCEEEEEC---CCC--CHHHHHHCC-CCCCC
Q ss_conf             09999999974996999518---985--479999779-98782
Q gi|254780777|r  201 DCASVVLARDCSIPIIVFSI---HSP--GGIWGGLSG-IGRST  237 (242)
Q Consensus       201 ~~~A~~~a~~~gI~v~I~ng---~~~--~~i~~~l~G-e~~GT  237 (242)
                      +..|.++|++.|+|++.+|.   ++|  .||.++.++ |..+|
T Consensus       143 ~~na~~iAk~~~~~vilins~ynRkp~~~niiR~~~w~e~y~~  185 (194)
T COG5663         143 HDNAGQIAKNAGIPVILINSPYNRKPAAKNIIRANNWAEAYEW  185 (194)
T ss_pred             CCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7248999883597089823734566527889998718999999


No 94 
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=50.17  E-value=19  Score=16.27  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             888249999940036853887770899999999999999976990999823654
Q gi|254780777|r    3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus         3 ~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      .++=|||++=+.||.=+           .++..+++.+++++|-+|..|.|..+
T Consensus         2 ~L~gK~I~lgvTGSiaa-----------y~kv~~~ir~L~~~GA~V~~ImS~~a   44 (195)
T PRK08305          2 SLKGKRIGFGLTGSHCT-----------YEEVMPQIEKLVAEGAEVRPIVSYTV   44 (195)
T ss_pred             CCCCCEEEEEECCHHHH-----------HHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             76898899996727998-----------99999999999987996999975447


No 95 
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; InterPro: IPR010023    This entry is a part of the haloacid dehalogenase (HAD) superfamily of hydrolases from beta, gamma and epsilon proteobacteria, Aquifex, Fusobacterium, Porphyromonas and Methanosarcina. All characterised members of the HAD-superfamily hydrolase, subfamily IIIA and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family.    Lipopolysaccharides of Gram-negative bacteria consist of a heteropolysaccharide component (O-antigen) and a hydrophobic component (lipid A). Linking the two portions is 3-Deoxy-D-manno-octulosonate (KDO), an 8-carbon sugar. Biosynthesis of KDO linked to lipid A proceeds via five steps, one of which involves removal of a phosphate from KDO 8-P via the action of KDO 8-P phosphatase (3.1.3.45 from EC; IPR008230 from INTERPRO) . One member of this family, the YrbI protein from Haemophilus influenzae has been cloned, expressed, purified and found to be an active phosphatase. Furthermore, its crystal structure has been determined .   The sequence from Methanosarcina acetivorans, Q8TJL6 from SWISSPROT, is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (IPR003329 from INTERPRO) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences are also closely related to this family; one such sequence is the CMP-N-acetylneuraminic acid synthetase from mouse, but in this case as in the others the phosphatase domain is clearly inactive as many of the active site residues are not conserved.; GO: 0019143 3-deoxy-manno-octulosonate-8-phosphatase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=49.70  E-value=13  Score=17.26  Aligned_cols=23  Identities=9%  Similarity=0.056  Sum_probs=11.5

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             99999997499699951898547
Q gi|254780777|r  203 ASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       203 ~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
                      .+++.+.+.|+++-|.+||+...
T Consensus        35 ~gI~~~lk~gi~~AiItGR~~~~   57 (154)
T TIGR01670        35 IGIKLLLKLGIKVAIITGRDAKL   57 (154)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHH
T ss_conf             89999997498698981798756


No 96 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=49.41  E-value=19  Score=16.20  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=25.7

Q ss_pred             CCCHHH----HHHHHHCCCCEEEEECC--CCCHHHHHHC-C
Q ss_conf             140999----99999749969995189--8547999977-9
Q gi|254780777|r  199 VMDCAS----VVLARDCSIPIIVFSIH--SPGGIWGGLS-G  232 (242)
Q Consensus       199 v~~~~A----~~~a~~~gI~v~I~ng~--~~~~i~~~l~-G  232 (242)
                      +=|.+|    ++.|.++|||| |++|-  .-|.|.|||. |
T Consensus       325 vPQ~TAv~~Va~~A~~~Gi~V-IADGGIr~SGDivKAlAaG  364 (476)
T TIGR01302       325 VPQITAVYDVAEYAAQSGIPV-IADGGIRYSGDIVKALAAG  364 (476)
T ss_pred             CHHHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHC
T ss_conf             626889999999997279909-9837756255899999816


No 97 
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=48.91  E-value=19  Score=16.15  Aligned_cols=31  Identities=16%  Similarity=0.064  Sum_probs=15.4

Q ss_pred             CCCHHHHHHHHHHHCHHHHHH--CCCCCCCCCC
Q ss_conf             762157888886416446651--4754351234
Q gi|254780777|r  143 LTTDSAAALRASEIGADVILK--GTQVDGVYSA  173 (242)
Q Consensus       143 ~~~D~~a~~ia~~~~ad~l~i--~tdvdGiyt~  173 (242)
                      ++-+..+..++..++.|...-  +...||.||.
T Consensus       101 gg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG  133 (212)
T COG0560         101 GGFTFLVEPIAERLGIDYVVANELEIDDGKLTG  133 (212)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHEEEECCCCCCC
T ss_conf             886999999999949757650201431774136


No 98 
>pfam05141 DIT1_PvcA Pyoverdine/dityrosine biosynthesis protein. This family includes DIT1 that is involved in synthesising dityrosine. Dityrosine is a sporulation-specific component of the yeast ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Pseudomonas aeruginosa PvcA is involved in the biosynthesis of pyoverdine.
Probab=45.68  E-value=22  Score=15.87  Aligned_cols=45  Identities=31%  Similarity=0.505  Sum_probs=34.5

Q ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
Q ss_conf             94003685388777089999999999999997699099982365410
Q gi|254780777|r   12 KVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF   58 (242)
Q Consensus        12 KiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~   58 (242)
                      |.-| .|-|. +..+...+|+++|+.|.+.+.-|-++.|+|-|-.+.
T Consensus        28 KVlG-~lPD~-aEelaL~~Ln~lc~~I~~vY~PGa~i~I~SDG~Vf~   72 (274)
T pfam05141        28 KVLG-SLPDK-AEELALERLNGLCERIQAVYPPGAKITIVSDGHVFS   72 (274)
T ss_pred             CCCC-CCCCH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEC
T ss_conf             4578-89977-899999999999999997588995899972686510


No 99 
>TIGR01077 L13_A_E ribosomal protein L13; InterPro: IPR005755   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=44.41  E-value=23  Score=15.72  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             999999999999976990999823
Q gi|254780777|r   30 SVNRICADIAEVYAKGIEIGIVVG   53 (242)
Q Consensus        30 ~i~~ia~~I~~~~~~g~~vviV~s   53 (242)
                      .|-|||..||...=.|.+|+||=.
T Consensus         9 ilGRLAS~VAK~lL~G~~vVvVnA   32 (144)
T TIGR01077         9 ILGRLASVVAKRLLNGERVVVVNA   32 (144)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             137689999998757986789722


No 100
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.   These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO.   Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=42.86  E-value=18  Score=16.34  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             9999999999997699099982365
Q gi|254780777|r   31 VNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus        31 i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      |.|.-..| ++.++|+.|.|||||-
T Consensus        57 ~~Ra~~Ai-~~A~~G~~VAlvSSGD   80 (254)
T TIGR01466        57 IERAELAI-ELAKEGKTVALVSSGD   80 (254)
T ss_pred             HHHHHHHH-HHHHCCCEEEEEECCC
T ss_conf             89999999-9986099489993687


No 101
>PRK10949 protease 4; Provisional
Probab=42.05  E-value=25  Score=15.49  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             824999994003685388777089999999999999997699099982
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVV   52 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~   52 (242)
                      +-|-||+++++-.       +.....+..+.+.|.++++.|+.|+...
T Consensus       112 rI~givLdl~~~~-------g~~~a~l~eI~~AL~~FK~SGK~ViAy~  152 (618)
T PRK10949        112 NITGIVLDLKNFA-------GADQPSMQYIGKALREFRDSGKPVYAVG  152 (618)
T ss_pred             CEEEEEEECCCCC-------CCCHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             8259999777788-------8788999999999999998199399996


No 102
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490; InterPro: IPR006385   This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase. Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the proteins in this family possess PSPase activity. .
Probab=40.96  E-value=26  Score=15.39  Aligned_cols=18  Identities=28%  Similarity=0.184  Sum_probs=11.4

Q ss_pred             HHHHHHCCCEEEEEECCC
Q ss_conf             999997699099982365
Q gi|254780777|r   38 IAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus        38 I~~~~~~g~~vviV~sg~   55 (242)
                      +..++.+||.++|||++.
T Consensus        98 ~~~H~~~G~~~vlvSaS~  115 (204)
T TIGR01490        98 IKAHKAEGHTIVLVSASL  115 (204)
T ss_pred             HHHHHHCCCEEEEECCCH
T ss_conf             999998089389981678


No 103
>TIGR01662 HAD-SF-IIIA hydrolase, HAD-superfamily, subfamily IIIA; InterPro: IPR006549   This group of proteins is a part of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterised by the lack of any domains located either between the first and second conserved catalytic motifs (as in the Class I subfamilies) or between the second and third conserved catalytic motifs (as in the Class II subfamilies) of the superfamily domain , . The IIIA subfamily contains five major clades: histidinol-phosphatase , histidinol-phosphatase-related protein, DNA 3-phosphatase and sequences related to YqeG and YrbI..
Probab=40.74  E-value=25  Score=15.48  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=25.7

Q ss_pred             HHHHHH--HHHHHH-HCCCEEEEEECCCCCHHHHHH
Q ss_conf             999999--999999-769909998236541023344
Q gi|254780777|r   31 VNRICA--DIAEVY-AKGIEIGIVVGGGNIFRGSQV   63 (242)
Q Consensus        31 i~~ia~--~I~~~~-~~g~~vviV~sg~~~~~~~~~   63 (242)
                      ...+.+  .+++++ .+|++|+|||.....+|++..
T Consensus        30 ~~~~~~Gl~~~~l~W~~G~~v~i~tN~~Gigrg~~~   65 (171)
T TIGR01662        30 YPGVIDGLALAELKWKAGYKVVIVTNQSGIGRGYFS   65 (171)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf             688600189998887459769999788742111268


No 104
>TIGR00099 Cof-subfamily Cof-like hydrolase; InterPro: IPR000150   The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification . Proteins in this entry are mostly uncharacterised, though they form a distinct subgroup within the HAD superfamily. Members are found almost exclusively in bacteria and many species contain several paralogs, for example Escherichia coli contains a total of six proteins from this entry. Sequence similarities suggest that these enzymes are phosphatases which work on phosphorylated sugars.   The YbiV (P75792 from SWISSPROT) protein from E. coli has been experimentally characterised . This enzyme catalyzes the hydrolysis of sugar phosphate to sugar and inorganic phosphate. It has a wide substrate specificity, catalyzing the hydrolysis of ribose-5-phosphate and glucose-6-phosphate most efficiently, but it is not known if these are the real substrates in vivo. The protein appears to be a monomer that contains two domains, an alpha-beta hydrolase domain that forms a Rossman fold, and an alpha-beta domain. The active site is found in a negatively charged cavity found at the interface between the two domains. ; GO: 0016787 hydrolase activity, 0008152 metabolic process.
Probab=37.18  E-value=29  Score=15.02  Aligned_cols=41  Identities=17%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             EEEEEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             99994003685-388777089999999999999997699099982365
Q gi|254780777|r    9 VLLKVSGEALA-GISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         9 IViKiGGSsL~-~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      |++=+-|+.|. +..  .+.    .+.-+.|++++.+|++++|++|-.
T Consensus         2 i~~D~DGTLL~~~~~--~i~----~~~~~al~~l~~~G~~~~laTGR~   43 (270)
T TIGR00099         2 IFIDLDGTLLNKDDK--EIS----PSTKEALAKLREKGIKVVLATGRP   43 (270)
T ss_pred             EEEECCCEEECCCCC--CCC----HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             889638503559987--518----889999999996698899981886


No 105
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=36.95  E-value=30  Score=15.00  Aligned_cols=31  Identities=29%  Similarity=0.347  Sum_probs=16.3

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             68538877708999999999999999769909998236541
Q gi|254780777|r   17 ALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI   57 (242)
Q Consensus        17 sL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~   57 (242)
                      +|+.+||-|=     +.++..|+     ||.-.-|++|-..
T Consensus        30 AiMGPNGsGK-----STL~~~ia-----Ghp~y~vt~G~I~   60 (248)
T TIGR01978        30 AIMGPNGSGK-----STLSKTIA-----GHPKYEVTSGTIL   60 (248)
T ss_pred             EEECCCCCCH-----HHHHHHHH-----CCCCEEEEEEEEE
T ss_conf             9868899847-----88877761-----7993378420898


No 106
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.59  E-value=30  Score=14.96  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=9.4

Q ss_pred             CCCCCCHHHHHHHHHCCCC-EEEEECC
Q ss_conf             9981409999999974996-9995189
Q gi|254780777|r  196 GLKVMDCASVVLARDCSIP-IIVFSIH  221 (242)
Q Consensus       196 G~~v~~~~A~~~a~~~gI~-v~I~ng~  221 (242)
                      -.|++=..-...|.+-.-. ++.-+|.
T Consensus       203 rTMv~VTHEM~FAR~Vss~v~fLh~G~  229 (256)
T COG4598         203 RTMVVVTHEMGFARDVSSHVIFLHQGK  229 (256)
T ss_pred             CEEEEEEEEHHHHHHHHHHEEEEECCE
T ss_conf             748999620467775300168755444


No 107
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=34.53  E-value=33  Score=14.76  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf             999999997499699951898547999
Q gi|254780777|r  202 CASVVLARDCSIPIIVFSIHSPGGIWG  228 (242)
Q Consensus       202 ~~A~~~a~~~gI~v~I~ng~~~~~i~~  228 (242)
                      -.+|++|+..|+|++|.++...+-|..
T Consensus       346 YS~aeIak~lg~PvyivS~cnksGIEg  372 (482)
T PRK06278        346 YSGAEIAKALGFPVYIVSSCSKGGIEG  372 (482)
T ss_pred             CCHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf             768999985599889994255566047


No 108
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=34.52  E-value=33  Score=14.76  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             9994003685388777089999999999999997699099982365
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      +.-|=+|-+.++.+.   .-.++++|+++.+.+++|-++++|.|.+
T Consensus       168 ~F~FM~~~vSsErp~---e~~i~~IA~E~~ei~~kgGkIvvv~GPa  210 (415)
T COG1915         168 EFEFMGSGVSSERPV---ETLIEQIAWEIREIRDKGGKIVVVAGPA  210 (415)
T ss_pred             EEEEECCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf             577612787767857---7999999999999986499289982673


No 109
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=32.62  E-value=35  Score=14.57  Aligned_cols=82  Identities=12%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCC
Q ss_conf             8999999999999999769909998236541023344203777754024678888898999999-999997618864113
Q gi|254780777|r   27 DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINALA-LDLALRKINVPTVIL  105 (242)
Q Consensus        27 ~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  105 (242)
                      |.+++..+.+.++++++.|+.+++|+-=...+|++-....       -     ..+...+.-.+ ....+...|+-.+.+
T Consensus        24 ~F~F~~Gv~~~l~~~K~~Gy~L~lvTNQSGI~RG~ft~~~-------F-----~~LT~~~~~SLf~e~d~~LDGIYyC~H   91 (178)
T TIGR00213        24 NFEFIDGVIDALRELKKLGYKLVLVTNQSGIARGYFTEKQ-------F-----EQLTEWLDWSLFAERDVDLDGIYYCPH   91 (178)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHH-------H-----HHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             3215566999999987458278898745655435427788-------9-----999999988876524887363244578


Q ss_pred             CCCH-HHHHHHHHHHH
Q ss_conf             4001-00245665432
Q gi|254780777|r  106 SSIF-MPQVCEVFSCR  120 (242)
Q Consensus       106 ~~~~-~~~~~~~~~~~  120 (242)
                      .+.. .....+...+|
T Consensus        92 ~p~~~~~e~~~~C~CR  107 (178)
T TIGR00213        92 HPEGSKEEYKENCDCR  107 (178)
T ss_pred             CCCCCHHHHHHCCCCC
T ss_conf             9732013566226778


No 110
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=32.32  E-value=35  Score=14.54  Aligned_cols=20  Identities=40%  Similarity=0.579  Sum_probs=16.3

Q ss_pred             CEEEEEEEEEEEEECCCCCCC
Q ss_conf             249999940036853887770
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGV   26 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~   26 (242)
                      ||++|+=+ |+.|..+++.++
T Consensus         1 mk~lvlgi-GN~L~gDDG~G~   20 (156)
T PRK11544          1 MTDVLLCV-GNSMMGDDGAGP   20 (156)
T ss_pred             CCEEEEEE-CCCCCCCCCHHH
T ss_conf             96489983-864305574759


No 111
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi.  PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=31.87  E-value=36  Score=14.49  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             99999999999976990999823654
Q gi|254780777|r   31 VNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        31 i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      -..+..+|+.++.+|++|+|-.||+.
T Consensus        58 C~~i~~dI~~CQ~~GkkVlLSlGG~~   83 (280)
T cd02877          58 CPQLGADIKHCQSKGKKVLLSIGGAG   83 (280)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             05689999999987998999736888


No 112
>TIGR00300 TIGR00300 conserved hypothetical protein TIGR00300; InterPro: IPR005239    This family of conserved hypothetical proteins has no known function..
Probab=31.67  E-value=36  Score=14.47  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC----C-CEEEEEECCC
Q ss_conf             99940036853887770899999999999999976----9-9099982365
Q gi|254780777|r   10 LLKVSGEALAGISGFGVDIDSVNRICADIAEVYAK----G-IEIGIVVGGG   55 (242)
Q Consensus        10 ViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~----g-~~vviV~sg~   55 (242)
                      |.-|=+|-+.++.+.   ...+++||+++.+++++    | =++++|-|-+
T Consensus       175 ~FeFM~~~vSSE~p~---e~~i~~IA~E~~ei~~~yrk~GkG~I~vvaGPa  222 (418)
T TIGR00300       175 VFEFMGSEVSSERPV---ETLIEKIAKEIYEIREKYRKTGKGKIVVVAGPA  222 (418)
T ss_pred             CCEECCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf             000015776544305---799999999999999986315883389985780


No 113
>CHL00189 infB translation initiation factor 2; Provisional
Probab=31.46  E-value=37  Score=14.45  Aligned_cols=100  Identities=18%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------HHHHHHCCCCCCC---
Q ss_conf             1111246556777621578888864164466514754351234322344444444115------9999855998140---
Q gi|254780777|r  131 VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT------YNQFIEKGLKVMD---  201 (242)
Q Consensus       131 ~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is------~~e~l~~G~~v~~---  201 (242)
                      .|++........|-+..+-++.-.-+-+..----|.-.|-|.-+-....+.+.|..+.      +..|..+|+.++|   
T Consensus       272 pPVVTIMGHVDHGKTsLLD~iR~t~Va~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPGHeAFt~MRaRGA~vTDIvI  351 (770)
T CHL00189        272 PPIVTILGHVDHGKTTLLDAIRKTNIAQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPGHEAFSSMRSRGANVTDIAI  351 (770)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             99899857725772037888852885134567655503529997515788975899559946889999862786666799


Q ss_pred             -------------HHHHHHHHHCCCCEEEEE------CCCCCHHHHHH
Q ss_conf             -------------999999997499699951------89854799997
Q gi|254780777|r  202 -------------CASVVLARDCSIPIIVFS------IHSPGGIWGGL  230 (242)
Q Consensus       202 -------------~~A~~~a~~~gI~v~I~n------g~~~~~i~~~l  230 (242)
                                   ..|+..|+.+|+|++++=      +-+|+.+..-|
T Consensus       352 LVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL  399 (770)
T CHL00189        352 LIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQEL  399 (770)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             999657885672799999998769988999877458998857899999


No 114
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802   Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=30.60  E-value=38  Score=14.36  Aligned_cols=32  Identities=9%  Similarity=0.114  Sum_probs=22.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEC
Q ss_conf             8777089999999999999997699--0999823
Q gi|254780777|r   22 SGFGVDIDSVNRICADIAEVYAKGI--EIGIVVG   53 (242)
Q Consensus        22 ~~~~~~~~~i~~ia~~I~~~~~~g~--~vviV~s   53 (242)
                      .-.++..++..++.+.++++++...  =+|+||+
T Consensus        22 ~mNTLkaeF~~qv~~il~q~~~~~~l~GlV~~Sg   55 (732)
T TIGR02440        22 KMNTLKAEFADQVSEILKQLKEKKELRGLVLVSG   55 (732)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             5202255446899999999972888735899852


No 115
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.37  E-value=38  Score=14.34  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=18.4

Q ss_pred             HHHHHHHHH-HHHHCCCEEEEEECCCC
Q ss_conf             999999999-99976990999823654
Q gi|254780777|r   31 VNRICADIA-EVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        31 i~~ia~~I~-~~~~~g~~vviV~sg~~   56 (242)
                      +++.+..++ .|.++||+|.+++.+++
T Consensus        21 ~e~~~~~La~~L~~~Gh~V~v~~~~~~   47 (335)
T cd03802          21 TERVVAALTEGLVARGHEVTLFASGDS   47 (335)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999999999999976998999962898


No 116
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896    A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=30.13  E-value=38  Score=14.31  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=26.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             899999999999999976990999823654
Q gi|254780777|r   27 DIDSVNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        27 ~~~~i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      |...|+.+-+.+.||+=.=++|+||||-|-
T Consensus         9 DFGIL~AL~~AL~EL~LdP~qvvVVSGIGC   38 (302)
T TIGR02177         9 DFGILSALQKALAELNLDPEQVVVVSGIGC   38 (302)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             677899999999862889852799813131


No 117
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=28.88  E-value=40  Score=14.18  Aligned_cols=47  Identities=28%  Similarity=0.499  Sum_probs=30.8

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
Q ss_conf             824999994003685388777089999999999999997699099982365410
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF   58 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~   58 (242)
                      +|+.+|+=+ |+.|..++|+|+      ++|+.+++....-..+.++-+|....
T Consensus         1 ~~~ilIlG~-GN~L~~DDG~Gv------~vae~L~~~~~~~~~v~vid~Gt~~~   47 (160)
T COG0680           1 KMRILILGV-GNILMGDDGFGV------RVAEKLKKRYKPPENVEVIDGGTAGP   47 (160)
T ss_pred             CCEEEEEEE-CCCCCCCCCCCH------HHHHHHHHHCCCCCCEEEEECCCCCH
T ss_conf             975899960-884416674039------99999998457777738997687708


No 118
>pfam05116 S6PP Sucrose-6F-phosphate phosphohydrolase. This family consists of Sucrose-6F-phosphate phosphohydrolase proteins found in plants and cyanobacteria. Sucrose-6(F)-phosphate phosphohydrolase catalyses the final step in the pathway of sucrose biosynthesis.
Probab=27.98  E-value=42  Score=14.08  Aligned_cols=45  Identities=11%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             824999994003685388777089999999999999997699099982365
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      +.|-|+.-+=|+.|.++..  +.    .+..+.|.+++++|+.+++++|-.
T Consensus         1 P~~LIa~DlDGTLL~~~~~--i~----~~~~~al~~l~~~Gi~vviaTGR~   45 (247)
T pfam05116         1 PRLLLVSDLDNTLVDGDNE--AL----ARLNQLLEAQYRPDSLLVFATGRS   45 (247)
T ss_pred             CCEEEEEECCCCCCCCCCC--CC----HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9889999387878093495--88----999999999995898899988999


No 119
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=27.92  E-value=42  Score=14.07  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=8.4

Q ss_pred             HHHHCCCEEEEEECCC
Q ss_conf             9997699099982365
Q gi|254780777|r   40 EVYAKGIEIGIVVGGG   55 (242)
Q Consensus        40 ~~~~~g~~vviV~sg~   55 (242)
                      +++++-..+++||||+
T Consensus        26 ~~~~~~pd~vlihGG~   41 (71)
T pfam10686        26 KVHARHPDMVLLHGGA   41 (71)
T ss_pred             HHHHHCCCEEEEECCC
T ss_conf             9998689879997798


No 120
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=27.45  E-value=43  Score=14.02  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=28.6

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE--EEEEECCC
Q ss_conf             036853887770899999999999999976990--99982365
Q gi|254780777|r   15 GEALAGISGFGVDIDSVNRICADIAEVYAKGIE--IGIVVGGG   55 (242)
Q Consensus        15 GSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~--vviV~sg~   55 (242)
                      |-=|+|++.    ++.|.+++++.....+.+..  ++|++|+=
T Consensus        49 GiPL~DdDR----~pWL~~l~~~~~~~~~~~~~~~~~~~CSAL   87 (175)
T TIGR01313        49 GIPLNDDDR----WPWLKNLADALAQAAAKNKVHLVIITCSAL   87 (175)
T ss_pred             CCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             888870120----437999999999998457745447884011


No 121
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=27.10  E-value=43  Score=13.98  Aligned_cols=17  Identities=41%  Similarity=0.407  Sum_probs=12.2

Q ss_pred             HHHHHHHHHCCCEEEEE
Q ss_conf             99999999769909998
Q gi|254780777|r   35 CADIAEVYAKGIEIGIV   51 (242)
Q Consensus        35 a~~I~~~~~~g~~vviV   51 (242)
                      .+.|..|.+.|++-+.|
T Consensus        29 ~eDI~~L~~~G~~~v~v   45 (312)
T cd03522          29 AEDIAALLAAGKEHVYV   45 (312)
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             99999999779967999


No 122
>TIGR01488 HAD-SF-IB HAD-superfamily hydrolase, subfamily IB (PSPase-like); InterPro: IPR006383   This group represents a subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. ; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=26.95  E-value=44  Score=13.97  Aligned_cols=17  Identities=24%  Similarity=0.198  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHHHHCHHH
Q ss_conf             62157888886416446
Q gi|254780777|r  144 TTDSAAALRASEIGADV  160 (242)
Q Consensus       144 ~~D~~a~~ia~~~~ad~  160 (242)
                      +.+....-+|..++.+.
T Consensus       113 g~~~~~~~~~e~~g~~~  129 (204)
T TIGR01488       113 GLDFLVEPLAEKLGVDE  129 (204)
T ss_pred             CHHHHHHHHHHHCCHHH
T ss_conf             86799999997528434


No 123
>PRK10976 putative sugar phosphatase; Provisional
Probab=26.73  E-value=44  Score=13.94  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             24999994003685388777089999999999999997699099982365
Q gi|254780777|r    6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         6 ~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      ||-|+.=+=|+.|.++.  .+..    +-.+.|.+++++|+.+++.+|-.
T Consensus         2 iKlIa~DlDGTLl~~~~--~is~----~~~~ai~~l~~~Gi~~viATGR~   45 (266)
T PRK10976          2 YQVVASDLDGTLLSPDH--TLSP----YAKETLKLLTARGIHFVFATGRH   45 (266)
T ss_pred             EEEEEEECCCCCCCCCC--CCCH----HHHHHHHHHHHCCCEEEEECCCC
T ss_conf             39999937646558879--7199----99999999997899999997999


No 124
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.11  E-value=45  Score=13.87  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHC
Q ss_conf             999999997499699951898547999977
Q gi|254780777|r  202 CASVVLARDCSIPIIVFSIHSPGGIWGGLS  231 (242)
Q Consensus       202 ~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~  231 (242)
                      +.|++.|++.|+.++-+.|++-+.+...+.
T Consensus       126 i~Ai~~A~~~g~~~i~ltG~~gg~l~~l~~  155 (196)
T PRK10886        126 VKAVEAAVTRDMTIVALTGYDGGELAGLLG  155 (196)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHCC
T ss_conf             999999998899899997688623665157


No 125
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=25.85  E-value=46  Score=13.84  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=16.9

Q ss_pred             HHHHHHCCCEEEEEECCCCCHH
Q ss_conf             9999976990999823654102
Q gi|254780777|r   38 IAEVYAKGIEIGIVVGGGNIFR   59 (242)
Q Consensus        38 I~~~~~~g~~vviV~sg~~~~~   59 (242)
                      +.+..++|-+++.|++||.-.+
T Consensus        98 ~~~A~~rga~vi~ItsGG~L~~  119 (328)
T PRK08674         98 VEQAKKRGAKIIAITSGGKLAE  119 (328)
T ss_pred             HHHHHHCCCCEEEEECCCCHHH
T ss_conf             9999975995899948970678


No 126
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD).  ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins.  The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain.  This family includes exochitinase Chi36 from Bacillus cereus.
Probab=25.36  E-value=47  Score=13.79  Aligned_cols=26  Identities=38%  Similarity=0.525  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             99999999999976990999823654
Q gi|254780777|r   31 VNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        31 i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      -..+-.+|+.++.+|++|+|-.||+.
T Consensus        59 ~~~f~~dI~~~qs~G~kVllSiGGa~   84 (312)
T cd02871          59 PAEFKADIKALQAKGKKVLISIGGAN   84 (312)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             89999999999978998999807877


No 127
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.91  E-value=48  Score=13.73  Aligned_cols=18  Identities=28%  Similarity=0.362  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHCHHHHH
Q ss_conf             215788888641644665
Q gi|254780777|r  145 TDSAAALRASEIGADVIL  162 (242)
Q Consensus       145 ~D~~a~~ia~~~~ad~l~  162 (242)
                      --+.|...|-+++.+.++
T Consensus       142 qQRVAIARALaM~P~vmL  159 (240)
T COG1126         142 QQRVAIARALAMDPKVML  159 (240)
T ss_pred             HHHHHHHHHHCCCCCEEE
T ss_conf             899999998717998886


No 128
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=24.74  E-value=48  Score=13.71  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=26.5

Q ss_pred             EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             4999994003685388777089999999999999997699099982365
Q gi|254780777|r    7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         7 KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      |||++=+.||+=+            -+..+.+.++++.|.+|-+|.+-.
T Consensus         3 K~IllgvtGsIAa------------yK~~~lir~L~k~g~~V~vi~T~~   39 (180)
T PRK07313          3 KKILLAVSGSIAA------------YKAADLTSQLTKIGYDVTVIMTKA   39 (180)
T ss_pred             CEEEEEEECHHHH------------HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             7699999549999------------999999999998899599997746


No 129
>KOG2599 consensus
Probab=24.45  E-value=49  Score=13.68  Aligned_cols=134  Identities=15%  Similarity=0.006  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHH-----CCCCCC-------CCHHHH--HHHHHHHHHH
Q ss_conf             77708999999999999999769909998236--5410233442-----037777-------540246--7888889899
Q gi|254780777|r   23 GFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVV-----AENYLL-------CERSTV--DSMGMLSTVI   86 (242)
Q Consensus        23 ~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~-----~~~~~~-------~~~~~~--~~~~~~~~~~   86 (242)
                      ||..+...++.+++.+++++++..+++-|.-.  |--+++|...     .+....       +.+-++  ..-....+..
T Consensus        88 GY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~e  167 (308)
T KOG2599          88 GYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEE  167 (308)
T ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHCCCEECCHH
T ss_conf             05688269999999999998429984999676346785174458777999986302555107761111143287424499


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999997618864113400100245665432100001100111112465567776215788888641
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEI  156 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~  156 (242)
                      -.......+++.+.+..+.+..................-.......-++-..+.+.|++|.-++++..-+
T Consensus       168 da~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~FtGTGDLfsaLLla~~  237 (308)
T KOG2599         168 DAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGVFTGTGDLFSALLLAWL  237 (308)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEECCCHHHHHHHHHHH
T ss_conf             9999999999748987999744307888857999986168825899922555289605189999999997


No 130
>PRK05920 aromatic acid decarboxylase; Validated
Probab=24.39  E-value=49  Score=13.67  Aligned_cols=40  Identities=23%  Similarity=0.453  Sum_probs=25.0

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             8249999940036853887770899999999999999976990999823654
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      +|||||+=+.|.|=   ..|+      .++   +..+.+.+.++-+|.|-++
T Consensus         3 ~mkrivvgITGASG---~~ya------~rl---l~~L~~~~~ev~lviS~~a   42 (205)
T PRK05920          3 KMKRIVLAITGASG---AIYG------VRL---LECLLAADYEVHLVISKAA   42 (205)
T ss_pred             CCCEEEEEEECHHH---HHHH------HHH---HHHHHHCCCEEEEEECHHH
T ss_conf             88759999865427---9999------999---9999867998999986789


No 131
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=24.19  E-value=49  Score=13.65  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=29.2

Q ss_pred             EEEEEEEEEEECCCCC-----CCCHHHH-HHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             9999400368538877-----7089999-9999999999976990999823
Q gi|254780777|r    9 VLLKVSGEALAGISGF-----GVDIDSV-NRICADIAEVYAKGIEIGIVVG   53 (242)
Q Consensus         9 IViKiGGSsL~~~~~~-----~~~~~~i-~~ia~~I~~~~~~g~~vviV~s   53 (242)
                      ...-+=|+.+.++.+.     .-|+..+ ..+.+.++.++++|+.++||+=
T Consensus         3 a~fD~DgTLi~~ksg~~~~~~~~Dw~~~~p~V~~~L~~L~~~gY~iVIvTN   53 (158)
T pfam08645         3 AAFDLDGTLIKTKSGKVFPKDADDWKWLYPSVPEKLKKLHEDGYKIVIFTN   53 (158)
T ss_pred             EEEECCCCEECCCCCCCCCCCCHHEEECCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf             999668952767889978999401188077889999999988987999947


No 132
>TIGR01487 SPP-like SPP-like hydrolase, Archaeal; InterPro: IPR006382   This group of Archaeal sequences is most closely related to the sucrose-phosphate phosphatases (SPP) from plants and cyanobacteria. If it should be shown that the proteins in this family possess sucrose-phosphatase activity then SPP would represent a broad family of functionally related proteins..
Probab=24.01  E-value=50  Score=13.63  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=22.8

Q ss_pred             EEECCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             685388-77708999999999999999769909998236
Q gi|254780777|r   17 ALAGIS-GFGVDIDSVNRICADIAEVYAKGIEIGIVVGG   54 (242)
Q Consensus        17 sL~~~~-~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg   54 (242)
                      .||++. .+-++    .+..+.|.++.++|..|++|||=
T Consensus        11 TLT~~~~~~~I~----~~A~e~iRk~~k~GI~V~LvtGN   45 (223)
T TIGR01487        11 TLTDEEKNRLIS----LRAIEAIRKAEKKGIKVSLVTGN   45 (223)
T ss_pred             CCCCCCCCCCCC----HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             425444463108----88999998675278369998088


No 133
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.64  E-value=50  Score=13.58  Aligned_cols=30  Identities=27%  Similarity=0.267  Sum_probs=14.6

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             6853887770899999999999999976990999823654
Q gi|254780777|r   17 ALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        17 sL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      +|..+||.+-     +.++..|.     |+.---|++|-.
T Consensus        34 aiMGPNGsGK-----STLa~~i~-----G~p~Y~Vt~G~I   63 (251)
T COG0396          34 AIMGPNGSGK-----STLAYTIM-----GHPKYEVTEGEI   63 (251)
T ss_pred             EEECCCCCCH-----HHHHHHHH-----CCCCCEEECCEE
T ss_conf             9988998788-----99999972-----899746755569


No 134
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.42  E-value=51  Score=13.56  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             88824999994003685388777089999999999999997699099982365
Q gi|254780777|r    3 DFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         3 ~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      .++=|||++=++||.=+            -.-++.+..|+++|.+|-+|.+-+
T Consensus        68 ~l~GKkIlLgVtGsIAA------------YKa~~LvR~L~k~Ga~V~vvmT~~  108 (476)
T PRK13982         68 SLGSKRITLIIGGGIAA------------YKALDLIRRLKERGAEVRCVLTKA  108 (476)
T ss_pred             CCCCCEEEEEECCHHHH------------HHHHHHHHHHHHCCCEEEEEECHH
T ss_conf             88899799996748999------------999999999997899899997877


No 135
>pfam00162 PGK Phosphoglycerate kinase.
Probab=23.18  E-value=51  Score=13.53  Aligned_cols=51  Identities=22%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             8824999994003685388777089999999999999997699099982365
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      ++-|||.+.+-=++=.. ++.-.|..||.+....|..+.++|-+++|.+.=|
T Consensus         7 ~~gK~VllRvD~NvPi~-~g~I~Dd~RI~~~~pTI~~Ll~~gakvvi~SH~G   57 (383)
T pfam00162         7 LKGKRVLVRVDFNVPLD-DGKITDDTRIRAALPTIKYLLEKGAKVVLLSHLG   57 (383)
T ss_pred             CCCCEEEEEECCCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             68999999932577754-9918976889999999999997899799995678


No 136
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=23.10  E-value=52  Score=13.52  Aligned_cols=58  Identities=21%  Similarity=0.438  Sum_probs=37.5

Q ss_pred             CCC-CEEEEEEEEEEEEECCCCC----------------CC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
Q ss_conf             888-2499999400368538877----------------70-8999999999999999769909998236541023
Q gi|254780777|r    3 DFP-YKRVLLKVSGEALAGISGF----------------GV-DIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG   60 (242)
Q Consensus         3 ~~~-~KrIViKiGGSsL~~~~~~----------------~~-~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~   60 (242)
                      ++| ++||.+-.||-|+-...-|                ++ -..+++.+-+-|.-+++++.++++-+|||+....
T Consensus        25 ei~~~~kVLi~YGGGSIKrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~  100 (384)
T COG1979          25 EIPKDAKVLIVYGGGSIKKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDG  100 (384)
T ss_pred             HCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf             5545572999956862000251999999854866999448778954899999999999739639999568420011


No 137
>PRK09982 universal stress protein UspD; Provisional
Probab=22.87  E-value=52  Score=13.49  Aligned_cols=48  Identities=10%  Similarity=0.091  Sum_probs=23.4

Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
Q ss_conf             88249999940036853887770899999999999999976990999823654102334
Q gi|254780777|r    4 FPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQ   62 (242)
Q Consensus         4 ~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~   62 (242)
                      |.||.|.+-+..   +.+      ..++-+=|-.+++-.+.  ++-+++=-......|.
T Consensus         1 M~YkHILVAVdL---s~e------S~~Li~KAv~lAk~~~A--klSlIhvd~~~~elY~   48 (142)
T PRK09982          1 MAYKHIGVAISG---NEE------DALLVNKALELARHNDA--HLTLIHIDDGLSELYP   48 (142)
T ss_pred             CCCCEEEEEEEC---CHH------HHHHHHHHHHHHHHCCC--EEEEEEEECCCHHHCC
T ss_conf             985179999855---841------69999999999876098--3999999088466511


No 138
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC; InterPro: IPR001757   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2.    This entry represents the several classes of P-type ATPases, including those that transport K^+ (3.6.3.12 from EC), Mg^2+ (3.6.3.2 from EC), Cd^2+ (3.6.3.3 from EC), Cu ^2+ (3.6.3.4 from EC), Zn^2+ (3.6.3.5 from EC), Na^+ (3.6.3.7 from EC), Ca^2+ (3.6.3.8 from EC), Na^+/K^+ (3.6.3.9 from EC), and H^+/K^+ (3.6.3.10 from EC). These P-ATPases are found in both prokaryotes and eukaryotes.   More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005524 ATP binding, 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006810 transport, 0016020 membrane.
Probab=22.76  E-value=52  Score=13.48  Aligned_cols=24  Identities=4%  Similarity=0.032  Sum_probs=20.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             999999997499699951898547
Q gi|254780777|r  202 CASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       202 ~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
                      ..+++.+++.||.+|+..|.++++
T Consensus       332 ~~~i~~L~~agi~v~mlTGD~~~t  355 (478)
T TIGR01494       332 KETIEELKRAGIKVWMLTGDNVET  355 (478)
T ss_pred             HHHHHHHHHCCCEEEEEECCCHHH
T ss_conf             899999986599899995798799


No 139
>pfam06581 DUF1135 Protein of unknown function (DUF1135). This family consists of several hypothetical mammalian proteins of unknown function.
Probab=22.64  E-value=35  Score=14.53  Aligned_cols=21  Identities=19%  Similarity=-0.050  Sum_probs=8.7

Q ss_pred             CCHHHHHHHHHHHCHHHHHHC
Q ss_conf             621578888864164466514
Q gi|254780777|r  144 TTDSAAALRASEIGADVILKG  164 (242)
Q Consensus       144 ~~D~~a~~ia~~~~ad~l~i~  164 (242)
                      ....+-.+.-.++-||.+-.+
T Consensus       148 t~~ClR~Lfr~lf~aD~fsel  168 (239)
T pfam06581       148 TAACLRRLFRAIFLADPFSEL  168 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             889999999999986245553


No 140
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.61  E-value=53  Score=13.46  Aligned_cols=14  Identities=29%  Similarity=0.444  Sum_probs=6.3

Q ss_pred             EEEEEEEEEEEECC
Q ss_conf             99999400368538
Q gi|254780777|r    8 RVLLKVSGEALAGI   21 (242)
Q Consensus         8 rIViKiGGSsL~~~   21 (242)
                      .-||-+-|+.....
T Consensus        61 Iavi~~~G~I~~~~   74 (317)
T COG0616          61 IAVIHVEGAIVAGG   74 (317)
T ss_pred             EEEEEEEEEEECCC
T ss_conf             99997454653487


No 141
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.38  E-value=53  Score=13.43  Aligned_cols=30  Identities=10%  Similarity=0.140  Sum_probs=22.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHC
Q ss_conf             999999997499699951898547999977
Q gi|254780777|r  202 CASVVLARDCSIPIIVFSIHSPGGIWGGLS  231 (242)
Q Consensus       202 ~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~  231 (242)
                      +.|++.|++.|+.++-+-|++-+.+...++
T Consensus       128 i~A~~~A~~~g~~~i~ltG~dgg~l~~l~~  157 (197)
T PRK13936        128 IQAIQAAHEREMHVVALTGRDGGKMASLLL  157 (197)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHCC
T ss_conf             999999998599599998168535675256


No 142
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=21.49  E-value=56  Score=13.32  Aligned_cols=20  Identities=10%  Similarity=0.125  Sum_probs=13.8

Q ss_pred             HHHHHHHCCCCEEEEECCCC
Q ss_conf             99999974996999518985
Q gi|254780777|r  204 SVVLARDCSIPIIVFSIHSP  223 (242)
Q Consensus       204 A~~~a~~~gI~v~I~ng~~~  223 (242)
                      -++.+++.|||-.-++.+..
T Consensus       187 L~~~c~~~gip~~~F~~F~D  206 (219)
T PRK09552        187 LITKCEENHISYTPFETFHD  206 (219)
T ss_pred             HHHHHHHCCCCCCCCCCHHH
T ss_conf             99999985999634399999


No 143
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=21.39  E-value=56  Score=13.31  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=33.0

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             824999994003685388777089999999999999997699099982365
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      .+|-|+.-+-|+.|.+...  +.    .+..+.|.+++++|+.+++++|-.
T Consensus         2 ~~kli~~DlDGTLl~~~~~--i~----~~~~~al~~~~~~g~~v~iaTGR~   46 (264)
T COG0561           2 MIKLLAFDLDGTLLDSNKT--IS----PETKEALARLREKGVKVVLATGRP   46 (264)
T ss_pred             CCEEEEEECCCCCCCCCCC--CC----HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             8569999476667489998--89----999999999997829899988998


No 144
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=21.21  E-value=56  Score=13.28  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=40.7

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             824999994003685388777089999999999999997699099982365
Q gi|254780777|r    5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG   55 (242)
Q Consensus         5 ~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~   55 (242)
                      +=|||.+.+-=++=.++++.-.|..||.+....|..+.++|-+++|.+-=|
T Consensus        12 ~gK~VllRvDlNVPi~~~g~I~Dd~RI~~~lpTI~~ll~~gakvvi~SHlG   62 (653)
T PRK13962         12 KGKKVFVRVDFNVPLDEDGNITDDTRIRAALPTIKYALDRGAKVILLSHLG   62 (653)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             899899992556875897908978899999999999997889799980688


No 145
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.16  E-value=57  Score=13.28  Aligned_cols=29  Identities=17%  Similarity=0.359  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             99999999999999976990999823654
Q gi|254780777|r   28 IDSVNRICADIAEVYAKGIEIGIVVGGGN   56 (242)
Q Consensus        28 ~~~i~~ia~~I~~~~~~g~~vviV~sg~~   56 (242)
                      .+.++.+++.+.+..+.|.++.+.=-||+
T Consensus        28 ~~~i~~~~~~i~~~~~~g~kI~~cGNGGS   56 (196)
T PRK13938         28 LEAARAIGDRLIAGYRAGARVFMCGNGGS   56 (196)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             99999999999999987998999968688


No 146
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms.  SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes.  The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge.  SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=21.13  E-value=57  Score=13.27  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=8.7

Q ss_pred             EEEEECCCCCCCCHHHHHHH
Q ss_conf             03685388777089999999
Q gi|254780777|r   15 GEALAGISGFGVDIDSVNRI   34 (242)
Q Consensus        15 GSsL~~~~~~~~~~~~i~~i   34 (242)
                      =+++..++|.| +...++.+
T Consensus        24 ~~~ivG~nGsG-KSni~~ai   42 (178)
T cd03239          24 FNAIVGPNGSG-KSNIVDAI   42 (178)
T ss_pred             EEEEECCCCCC-HHHHHHHH
T ss_conf             17998999887-78999999


No 147
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780   HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=21.04  E-value=57  Score=13.26  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CCCCHHH-HHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf             8140999-9999974996999518985479999
Q gi|254780777|r  198 KVMDCAS-VVLARDCSIPIIVFSIHSPGGIWGG  229 (242)
Q Consensus       198 ~v~~~~A-~~~a~~~gI~v~I~ng~~~~~i~~~  229 (242)
                      .++-.++ ..++.+++||.+|+ ||+|--|..+
T Consensus       211 ti~G~~~Y~~i~~~y~~P~Vva-GFEP~DiL~a  242 (384)
T TIGR00075       211 TIIGVKPYEPIAEKYKIPIVVA-GFEPVDILQA  242 (384)
T ss_pred             EEECHHHHHHHHHHCCCCEEEE-CCCHHHHHHH
T ss_conf             8515243488998568987996-8886799999


No 148
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=20.38  E-value=59  Score=13.18  Aligned_cols=31  Identities=13%  Similarity=0.025  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHCHHHHHH--CCCCCCCCCC
Q ss_conf             762157888886416446651--4754351234
Q gi|254780777|r  143 LTTDSAAALRASEIGADVILK--GTQVDGVYSA  173 (242)
Q Consensus       143 ~~~D~~a~~ia~~~~ad~l~i--~tdvdGiyt~  173 (242)
                      |+=...+..++..++-|...=  +--.||..|.
T Consensus       205 GGFt~fa~~l~~~Lg~D~~~AN~Lei~dg~LTG  237 (322)
T PRK11133        205 GGFTYFADYLKDKLRLDAAVANELEIMDGKLTG  237 (322)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEEEEEECCEEEC
T ss_conf             881799999999739886870267987899744


Done!