HHsearch results for GI: 254780777 and protein with PDBid: 1ybd_A
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=0 Score=315.67 Aligned_cols=237 Identities=44% Similarity=0.740 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 96888249999940036853887770899999999999999976990999823654102334420377775402467888
Q gi|254780777|r 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMG 80 (242)
Q Consensus 1 m~~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
|++|||||||||||||+|+++++++++.++|+++|++|++++++|+++++|+||+...+.............. ....
T Consensus 2 ~~~~k~krIViKiGGs~l~~~~~~~i~~~~i~~ia~~I~~l~~~g~~vivVssGa~~~~~~~~~~~~~~~~~~---~~~~ 78 (239)
T 1ybd_A 2 TQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATA---DYMG 78 (239)
T ss_dssp --CCSCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHH---HHHH
T ss_pred CCCCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCHHH---HHHH
T ss_conf 8666477699997721211799988699999999999999997799799996787556630333047874379---9999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHH
Q ss_conf 88989999999999976188641134001002456654321000011001111124655677762157888886416446
Q gi|254780777|r 81 MLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADV 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~ 160 (242)
...........+..+...+.+..................+......+.+.++......+..+++||.+|+++|.++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~nD~laa~~a~~~~ad~ 158 (239)
T 1ybd_A 79 MMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDV 158 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHH
T ss_conf 99999999999999987687567401002356788877999999863497802577522356665238999998824006
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf 65147543512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r 161 ILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242)
Q Consensus 161 l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242)
++++|||||+||+||+++++|++++.++++|+++.|+++||++|+++|+++||+++|+||++|++|.++++||++||+|+
T Consensus 159 l~i~tdvdGvy~~~P~~~~~a~~~~~~~~~e~~~~g~~~m~~~Aa~~a~~~gi~~~I~ng~~~~~i~~~l~Ge~~GT~Ih 238 (239)
T 1ybd_A 159 MLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp EEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
T ss_conf 65267778873789755766542020579999756844899999999998799799984899657999977999972757