RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (242 letters)



>3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric
           regulation, ATP-binding, cytoplasm kinase,
           nucleotide-binding; 2.34A {Xanthomonas campestris PV}
           PDB: 3ek5_A
          Length = 243

 Score =  168 bits (425), Expect = 1e-42
 Identities = 111/242 (45%), Positives = 159/242 (65%), Gaps = 3/242 (1%)

Query: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
           MS+  Y+R+LLK+SGEAL G   +G+D   +NR+  ++ E    G ++ +V+GGGNIFRG
Sbjct: 4   MSELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63

Query: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
           + + A           D MGML+TVINALA+  AL K+     ++S+I +  VCE F  R
Sbjct: 64  AGLAASGMDRVTG---DHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRR 120

Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
            A+ +L +G++ IF+ GTGN F TTDS AALRA EIGAD++LK T+VDGVY  DP+ H+ 
Sbjct: 121 RAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSD 180

Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           + R+DSLTY++ I +GL+VMD A+  LARD  +P+ +F +  PG +   L G    T++ 
Sbjct: 181 AVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQ 240

Query: 241 GE 242
           G 
Sbjct: 241 GR 242


>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
           kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
           tuberculosis}
          Length = 281

 Score =  166 bits (420), Expect = 5e-42
 Identities = 93/235 (39%), Positives = 142/235 (60%), Gaps = 4/235 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           Y RVLLK+ GE   G    G+D D V ++   IA+V   G++I +V+GGGN FRG+Q+  
Sbjct: 50  YSRVLLKLGGEMFGG-GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ 108

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
                 ER+  D MGML TV+N+LAL   L K  + T + ++I M QV E +    AV +
Sbjct: 109 LG---MERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRH 165

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           L +G+VVIF  G G  + +TD+ AA RA EIGADV+L    VDGV++ DPRV+  +    
Sbjct: 166 LEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLT 225

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           ++++ + +++GL+V D  +  L  D  +PI+VF++ + G I   + G    T+++
Sbjct: 226 AVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280


>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine
           biosynthesis, ATP-binding, nucleotide-binding, OPPF,
           PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
          Length = 255

 Score =  148 bits (374), Expect = 1e-36
 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 3/239 (1%)

Query: 5   PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64
           PYKRVL+K+SG ALA  +G   +   +  I  +I  +   GIE+ IV+GGGNIFRG    
Sbjct: 11  PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE 70

Query: 65  AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124
                       +   + + + + +   +   K N    +++SI    V E +    AV 
Sbjct: 71  EWGI--DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVH 128

Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT-QVDGVYSADPRVHASSTR 183
           +L  G +VIF GG G  F+TTD  +  RA E+ +D IL     VDGV+++DP+ + S+  
Sbjct: 129 HLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKM 188

Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242
           +  L YN  + + ++VMD A+++LARD ++P  VF+   PG +     G    T+I+ +
Sbjct: 189 YRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247


>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein
           structure initiative, NYSGXRC, PYRH, putative uridylate
           kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP:
           c.73.1.3
          Length = 252

 Score =  145 bits (365), Expect = 1e-35
 Identities = 89/244 (36%), Positives = 145/244 (59%), Gaps = 5/244 (2%)

Query: 1   MSDFP-YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59
           MS  P Y+R+L+K+SGEALAG  G G+DI +V  I  +IAEV+  G++I +V+GGGN++R
Sbjct: 1   MSLEPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWR 60

Query: 60  GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119
           G           +R   D  GML TV+NAL +  +L+   V T + ++I M  V E +  
Sbjct: 61  GEPAADAG---MDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIR 117

Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLTTDSA-AALRASEIGADVILKGTQVDGVYSADPRVH 178
             A+ +L + ++V+F  G G+ + +TD+  A   A      +++    VDGVY+ADP+  
Sbjct: 118 GRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKD 177

Query: 179 ASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238
           A++ +FD LT+ + I++GLK+MD  +  L+ D  I ++VF+++  G I   + G    T 
Sbjct: 178 ANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTT 237

Query: 239 ISGE 242
           +S +
Sbjct: 238 VSNK 241


>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3
           PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
          Length = 247

 Score =  144 bits (364), Expect = 2e-35
 Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 3/240 (1%)

Query: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
           +S   YKR+LLK+SGEAL G  G G+D   ++R+  +I E+   G+E+ +V+GGGN+FRG
Sbjct: 3   LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRG 62

Query: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
           +++         R   D MGML+TV+N LA+  +L + +V   ++S+  +  +C+ ++  
Sbjct: 63  AKLAKAG---MNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119

Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
            A+  L + +VVIFS GTGN F TTDS A LR  EI ADV+LK T+VDGVY  DP  +  
Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPD 179

Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           +  + +L+Y + I+K LKVMD ++  LARD  +PI VF++  PG +   ++G    T I 
Sbjct: 180 AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239


>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural
           genomics, protein structure initiative, PSI; 2.60A
           {Neisseria meningitidis} SCOP: c.73.1.3
          Length = 239

 Score =  142 bits (358), Expect = 7e-35
 Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 3/234 (1%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
           YKRVLLK+SGE+L G   FG++ D++ +   +IAEV   G+++GIVVGGGNIFRG    A
Sbjct: 7   YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA 66

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
            +    +R+T D MGM++TV+NALAL  A   + +   + S++ M Q+ E ++   A+ Y
Sbjct: 67  GS---MDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQY 123

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
           L +GKVVIF+ GTGN F TTD+AAALR +E+  DV+LK T VDGVY+ADP+   S+TR++
Sbjct: 124 LEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYE 183

Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
           ++T+++ + K LKVMD  +  L R+  + I+VF I   G +   ++G    T++
Sbjct: 184 TITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237


>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino
           acid kinase family; 2.50A {Ureaplasma parvum}
          Length = 256

 Score =  135 bits (339), Expect = 1e-32
 Identities = 85/236 (36%), Positives = 141/236 (59%), Gaps = 5/236 (2%)

Query: 6   YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
            +R+++K+SG  L       +D   +N +   I ++  K I   IV+GGGNI+RGS    
Sbjct: 24  KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVS-IVLGGGNIWRGSI--- 79

Query: 66  ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
              L  +R+  D+MGM++T+IN LAL+ AL  +NV T++LS+I   ++    S  N    
Sbjct: 80  AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKA 139

Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184
           + + +V+IF  GTG  + TTDS AA+RA+E  + +IL G   VDGVY +DP+++ ++  +
Sbjct: 140 IEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFY 199

Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
           + +T+N  + + LKVMD  ++ L ++ +I ++VF+I  P  I   L    + TI+S
Sbjct: 200 EHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255


>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
           kinase, aspartokinase fold, pyrimidine nucleotide
           synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
           solfataricus} PDB: 2j4k_A* 2j4l_A*
          Length = 226

 Score =  116 bits (291), Expect = 4e-27
 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 30/242 (12%)

Query: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
            ++LK+SG+          ++D++  +   I E+   G  +GIV GGG+  R    +A  
Sbjct: 2   NIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLARE 56

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127
             + E   +D +G+ ++ +NA  +            + S   +  +    S    +   S
Sbjct: 57  IGIGEA-YLDLLGIWASRLNAYLV------------MFSLQDLAYMHVPQSLEEFIQDWS 103

Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
            GKVV+          +T + AAL A    +  ++  T VDGVY  DPR++A       L
Sbjct: 104 HGKVVVTG--GFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHL 161

Query: 188 TYNQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRST 237
           T     +             +++D  ++ +     I +IV +      I   L G   S+
Sbjct: 162 TTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221

Query: 238 II 239
           II
Sbjct: 222 II 223


>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
           structure, metal binding protein; HET: ATP; 1.60A
           {Azotobacter vinelandii}
          Length = 276

 Score =  106 bits (265), Expect = 5e-24
 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 33/247 (13%)

Query: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
             ++K+ G  +          D++  +  ++ ++  +   + I+ G G   R    V  +
Sbjct: 41  LQVVKIGGRVMDR------GADAILPLVEELRKLLPEH-RLLILTGAGVRARHVFSVGLD 93

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127
             L    ++  +       N   L   L              +  V           +LS
Sbjct: 94  LGL-PVGSLAPLAASEAGQNGHILAAMLASEG----------VSYVEHPTVADQLAIHLS 142

Query: 128 QGKVVIFSG----------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177
             + V+ S           G+       D+ A L A   GA  +     VDG+Y+ADP  
Sbjct: 143 ATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNG 202

Query: 178 --HASSTRFDSLTYNQFIE-KGLKVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSG 232
                +      +     + +G   +D     V+        + V +   PG +   L G
Sbjct: 203 PDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRG 262

Query: 233 IGRSTII 239
               T+I
Sbjct: 263 EHVGTLI 269


>2ij9_A Uridylate kinase; structural genomics, protein structure
           initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus
           dsm 4304} SCOP: c.73.1.3
          Length = 219

 Score =  105 bits (262), Expect = 1e-23
 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 33/242 (13%)

Query: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67
           +V+L + G  L+       + + +      I  V  +  ++ +VVGGG + R     A  
Sbjct: 2   KVVLSLGGSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54

Query: 68  YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127
                 +  D +G+ +T +NA+ L  A+                          A     
Sbjct: 55  LGA-SETFCDYIGIAATRLNAMLLISAIP-------------SAAKKVPVDFMEAEELSK 100

Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
             +VV+   G      TTD+ AAL A  I ADV +  T VDGVYSADP+   S+ ++D L
Sbjct: 101 LYRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRL 158

Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238
           +  Q +E   +         V+D  +  +     I   V    +P  I   + G    T+
Sbjct: 159 SPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTV 217

Query: 239 IS 240
           I+
Sbjct: 218 IA 219


>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
           metal binding protein; HET: ATP; 1.60A {Azotobacter
           vinelandii}
          Length = 270

 Score =  105 bits (262), Expect = 1e-23
 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 12/236 (5%)

Query: 11  LKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLL 70
           +K+ G+++           +V  +  +I         + I  G G   R    +A    L
Sbjct: 41  IKIGGQSVIDRGR-----AAVYPLVDEIVAARKNHKLL-IGTGAGTRARHLYSIAAGLGL 94

Query: 71  CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGK 130
                +  +G      NA  L   L K  +P V  + +    +          S +   K
Sbjct: 95  -PAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYK 153

Query: 131 VVIFSGGTGN-AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY 189
           + +     G      TD+   L A + G   ++     DG+Y+A+P+    +T    ++ 
Sbjct: 154 LWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISV 213

Query: 190 NQFIEKGL--KVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241
           ++   KGL   +++     ++ +      + V +   PG +   L+G    TII+ 
Sbjct: 214 DEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269


>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
           transfer, pyrimidine biosynthesis, transferase; 2.40A
           {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
           2bmu_A* 2bri_A*
          Length = 244

 Score =  102 bits (254), Expect = 7e-23
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 28/248 (11%)

Query: 1   MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
           +    + R++  + G  L   +    DID +  I   + +V ++  E+ +VVGGG + R 
Sbjct: 14  VPRGSHMRIVFDIGGSVLVPENP---DIDFIKEIAYQLTKV-SEDHEVAVVVGGGKLARK 69

Query: 61  SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
              VAE       +  D +G+  T  NA+ L  ALR+             P V E F   
Sbjct: 70  YIEVAE-KFNSSETFKDFIGIQITRANAMLLIAALRE----------KAYPVVVEDFWEA 118

Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
                L      I   G  +   TTD+ AAL A  + AD+++  T VDGVY+ADP+   +
Sbjct: 119 WKAVQL----KKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPT 174

Query: 181 STRFDSLTYNQFIE---------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLS 231
           + +   +   + +E             V+D  +  +     I  IV        ++  + 
Sbjct: 175 AKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIK 234

Query: 232 GIGRSTII 239
           G    T I
Sbjct: 235 GDHNGTTI 242


>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
           pathway, isopentenyl phsophate kinase, beta-alpha
           sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
           {Thermoplasma acidophilum} PDB: 3lkk_A*
          Length = 249

 Score =  102 bits (254), Expect = 1e-22
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 22/252 (8%)

Query: 5   PYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63
           P+  ++LK+ G  +   S        ++  I   ++       ++  VV GG  F   + 
Sbjct: 2   PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLS----GIEDLVCVVHGGGSFGHIKA 57

Query: 64  VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPT---VILSSIFMPQVCEVFSCR 120
           +    L   ++   S+G      +   LDL +    +      I   I   +    F   
Sbjct: 58  MEFG-LPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYT 116

Query: 121 NAVSYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174
             + Y+  G V +  G             + D   A  A  +  DV +  T VDG+YS D
Sbjct: 117 PLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKD 176

Query: 175 PRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIW 227
           P+ +  +     +  N   ++       G+     + V +       + + + + P  I 
Sbjct: 177 PKRNPDAVLLRDIDTNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIG 236

Query: 228 GGLSGIGRSTII 239
                    T+I
Sbjct: 237 DIGKESFIGTVI 248


>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
           transferase, methanocald jannaschii, isopentenyl
           monophosphate; 2.05A {Methanocaldococcus jannaschii}
           PDB: 3k4y_A* 3k52_A* 3k56_A*
          Length = 266

 Score = 86.0 bits (212), Expect = 6e-18
 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 25/260 (9%)

Query: 7   KRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVY------AKGIEIGIVVGGGNIFR 59
              +LK+ G  L+  +  + +  D++ RI  +I           K I++ +V GGG    
Sbjct: 7   MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGH 66

Query: 60  G-SQVVAENYLLCERSTVDSMGMLSTVINALALDL----ALRKINVPTVILSSIFMPQVC 114
             ++   +     +       G           +      L+  ++P V +         
Sbjct: 67  PVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFG 126

Query: 115 EVFSCRNAV--SYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQ 166
           +      +     L +  V +  G        G   ++ D      A+E+ AD+IL  T 
Sbjct: 127 DKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATD 186

Query: 167 VDGVYSADPRV-HASSTRFDSLTYNQFIEKGLKV---MDCASVVLARDCSIPIIVFSIHS 222
           VDGV   +  +          +         + V   M    + + R       VF+ + 
Sbjct: 187 VDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYK-IEMIRKNKCRGFVFNGNK 245

Query: 223 PGGIWGGLSGIGRSTIISGE 242
              I+  L G    T I   
Sbjct: 246 ANNIYKALLGEVEGTEIDFS 265


>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
           transferase; HET: ADP; 2.15A {Methanothermobacter
           thermautotrophicusorganism_taxid}
          Length = 269

 Score = 75.6 bits (185), Expect = 1e-14
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 34/269 (12%)

Query: 6   YKRVLLKVSGEALAGISG--FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI------ 57
              ++LK+ G  +         +D D++ RI ++I       + I  V G G+       
Sbjct: 2   SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMI--VHGAGSFGHPFAG 59

Query: 58  -FRGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTV--ILSSIFMPQVC 114
            +R    +     L  R    ++           +  AL    +P V    S+       
Sbjct: 60  EYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAG 119

Query: 115 EVFSCRNAV--SYLSQGKVVIFSG--------GTGNAFLTTDSAAALRASEIGADVILKG 164
            +     ++  SYL +G V +  G            + ++ D      +  +  + ++ G
Sbjct: 120 RISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILG 179

Query: 165 TQVDGVYSADPRVHASSTRFDSLTYN--QFIEKGLKVMDC--------ASVVLARDCSIP 214
           T VDGVY+ +P+ H  +   D +          G    D           ++L  +  + 
Sbjct: 180 TDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVE 239

Query: 215 IIVFSIHSPGGIWGGLSG-IGRSTIISGE 242
             + +   PG I   L G   R T I+G+
Sbjct: 240 SEIINAAVPGNIERALLGEEVRGTRITGK 268


>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
           transfer, transferase; 1.53A {Streptomyces wedmorensis}
           PDB: 3d41_A*
          Length = 286

 Score = 64.1 bits (155), Expect = 3e-11
 Identities = 24/205 (11%), Positives = 58/205 (28%), Gaps = 10/205 (4%)

Query: 1   MSDFPYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59
            S      + +KV G   +       +D D+V R   + A +        +++ GG  F 
Sbjct: 18  GSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFG 77

Query: 60  GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119
              +   +          +      V    A  L    ++   + L+++   +       
Sbjct: 78  HGAIRDHDSTHAFSLAGLTEATFE-VKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLR 136

Query: 120 RNAVSYLSQGKVVIFSGG-------TGNAFLTTDSAAALRASEIGADV-ILKGTQVDGVY 171
              +  +     +    G             ++D    +    +   + ++  T VDG+ 
Sbjct: 137 SEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIV 196

Query: 172 SADPRVHASSTRFDSLTYNQFIEKG 196
           +            D+ +  Q     
Sbjct: 197 TDGAGGDTILPEVDARSPEQAYAAL 221


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 51/274 (18%), Positives = 78/274 (28%), Gaps = 122/274 (44%)

Query: 10  LLKVSG---EALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           +L +S    E +         ++  N     +     K +EI +V G  N+     VV+ 
Sbjct: 338 MLSISNLTQEQVQDY------VNKTNS---HLPA--GKQVEISLVNGAKNL-----VVSG 381

Query: 67  NYL-LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSS-IFMPQVCEVFSCRNAVS 124
               L                    L+L LRK   P+ +  S I  P     FS R    
Sbjct: 382 PPQSLY------------------GLNLTLRKAKAPSGLDQSRI--P-----FSER---- 412

Query: 125 YLSQGKVVIFSGGTGNAFL--TT-------DSAAALRASEIGADVILKGTQVDG------ 169
                K+        N FL   +         A+ L    I  D++      +       
Sbjct: 413 -----KLKFS-----NRFLPVASPFHSHLLVPASDL----INKDLVKNNVSFNAKDIQIP 458

Query: 170 VYS----ADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVV---LARDCSIP---IIVFS 219
           VY     +D RV + S   + +                  V              I+ F 
Sbjct: 459 VYDTFDGSDLRVLSGSI-SERIVD----------CIIRLPVKWETT--TQFKATHILDFG 505

Query: 220 IHSPGGIWGGLSGIG------------RSTIISG 241
              PGG     SG+G            R  I++G
Sbjct: 506 ---PGGA----SGLGVLTHRNKDGTGVR-VIVAG 531



 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 47/271 (17%), Positives = 74/271 (27%), Gaps = 120/271 (44%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG-GNIFRGSQVVA 65
           KR   K S  AL           +V       A++ A       + GG GN         
Sbjct: 134 KRPFDKKSNSAL---------FRAVGE---GNAQLVA-------IFGGQGNT-------- 166

Query: 66  ENYL--LCE---------RSTVDSMGMLSTVINALA-------------LDLA--LRKIN 99
           ++Y   L +            +         ++ L              L++   L   +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPS 223

Query: 100 -VPTV--ILSS-IFMP-----QVCE-VFSCRNA-------VSYL------SQGKVVIFSG 136
             P    +LS  I  P     Q+   V + +          SYL      SQG V     
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---- 279

Query: 137 GTGNAFL-TTDS-----AAALRASE----IGADVILKGTQVDGVYSADPRVHASSTRFDS 186
                 +  TDS      +  +A      IG    ++  +     S  P     S   DS
Sbjct: 280 ---AVAIAETDSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPP-----SILEDS 327

Query: 187 LTYNQFIEKGLKV---MDCASVVLARDCSIP 214
                 +E    V   M   S+    + +  
Sbjct: 328 ------LENNEGVPSPM--LSI---SNLTQE 347



 Score = 28.0 bits (62), Expect = 1.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 24/86 (27%)

Query: 163  KGTQVDGVYSA-------DPRV-----------HASSTRFDS----LTYNQFIEKGLKVM 200
            KG ++   YSA       D ++           H++S  F S    L+  QF +  L +M
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739

Query: 201  DCASVV-LARDCSIPI-IVFSIHSPG 224
            + A+   L     IP    F+ HS G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG 1765


>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
           jejuni} SCOP: c.73.1.3
          Length = 251

 Score = 53.1 bits (126), Expect = 6e-08
 Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 8/184 (4%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           KR+++KV    ++  +      + +  + A +A+   +  E+ +V         +++  +
Sbjct: 2   KRIVVKVGSHVISEENTL--SFERLKNLVAFLAK-LMEKYEVILVTSAAISAGHTKLDID 58

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
              L  +  + ++G    +     L     K+    ++    F  +     +       +
Sbjct: 59  RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMI 118

Query: 127 SQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181
           + G + I +           F   DS +A       AD+++  + +DG Y  +P   + +
Sbjct: 119 NLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDA 178

Query: 182 TRFD 185
            R +
Sbjct: 179 KRLE 182


>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase,
           hyperthermophiles, ADP site, phosphoryl group transfer;
           HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
          Length = 314

 Score = 52.9 bits (126), Expect = 7e-08
 Identities = 41/248 (16%), Positives = 63/248 (25%), Gaps = 74/248 (29%)

Query: 7   KRVLLKVSGEALAGISGFG---VDIDSVNRICADIAEVYAKGIEIGIVV----------- 52
           KRV++ + G AL      G     +D+V +    IAE+ A+G E+ I             
Sbjct: 3   KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62

Query: 53  --GGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL-------------------AL 91
               G    G      +             +   + N L                     
Sbjct: 63  HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122

Query: 92  DLALRKINVPTVILSS--------------------------IFMPQVCEVFSCRNAVSY 125
           D A +    P                                +  P              
Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182

Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172
           + +G +VI SGG G              A +  D A    A E+ AD+ +  T V+G   
Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242

Query: 173 ADPRVHAS 180
                   
Sbjct: 243 YYGTEKEQ 250


>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative
           initiati amino-acid biosynthesis, ATP-binding; HET: LYS;
           2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
          Length = 421

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 125 YLSQGKVVIFSGGTG----NAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174
            L +GK+ I +G  G       +TT      D+ A   A+ + ADV    + VDGVY+AD
Sbjct: 124 ALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183

Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225
           PR+  ++ + + L++ + +E    G K++   SV  AR  ++P+ V S +S   
Sbjct: 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDP 237


>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
           LYS; 2.54A {Synechocystis}
          Length = 600

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)

Query: 124 SYLSQGKVVIFSGGTGNA-----FLTT------DSAAALRASEIGADVILKGTQVDGVYS 172
            +L +GKVV+ +G  G +      +TT      D++A   A+ + AD     T V G+ +
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILT 182

Query: 173 ADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223
            DPR+   +     +T ++ +E    G KV+   +V +AR+  IP++V S  S 
Sbjct: 183 TDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD 236


>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
           regulation of arginine biosynthesis, nitrogen
           metabolism, kinase, transferase, transcription; HET: ARG
           ADP NLG ATP; 2.51A {Arabidopsis thaliana}
          Length = 298

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 49/273 (17%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG-------NIFR 59
           K +++K  G A+          +  + + +D+  +   G+   +V GGG           
Sbjct: 37  KTIVVKYGGAAMT-------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN 89

Query: 60  GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119
                 +   + + +T++ + M+        L   +       V LS      +      
Sbjct: 90  IPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVP 149

Query: 120 RN----------------AVSYLSQGKVVIFSGGTGNA-----FLTTDSAAALRASEIGA 158
            +                    +  G + + +    +       +  D+ A   A+ +GA
Sbjct: 150 NSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGA 209

Query: 159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-------LKVMDCASVVLARDC 211
           + ++  T V G+        +     D     + IE G        KV  C   +     
Sbjct: 210 EKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVK 269

Query: 212 SIPIIVFSIHSPGGIWGGL---SGIGRSTIISG 241
           +  II         +   +    G G  T+I+G
Sbjct: 270 TASII--DGRRQHSLLHEIMSDEGAG--TMITG 298


>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase,
           amino-acid biosynthesis, transferase, feedback
           regulation, PUA domain; HET: RGP; 2.5A {Escherichia
           coli} PDB: 2j5t_A*
          Length = 367

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 10/187 (5%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
           + +++K+    L G S   ++   +  +    A+++A G  I ++V  G I  G + +  
Sbjct: 5   QTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRI-VIVTSGAIAAGREHLGY 62

Query: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
             L    ++   +  +         +       +    +                  +  
Sbjct: 63  PELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLR 122

Query: 127 SQGKVVIFSGGTGNAFLTTD--------SAAALRASEIGADVILKGTQVDGVYSADPRVH 178
           +     +      N  + T         + +AL A   GAD +L  T   G+Y+ADPR +
Sbjct: 123 ALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSN 182

Query: 179 ASSTRFD 185
             +    
Sbjct: 183 PQAELIK 189


>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
           protein structure initiative, NYSGXRC, PSI; 2.80A
           {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2
          Length = 299

 Score = 36.0 bits (82), Expect = 0.007
 Identities = 55/277 (19%), Positives = 94/277 (33%), Gaps = 51/277 (18%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-------- 58
           K V++K  G A+        D        AD+A +   GI   +V GGG           
Sbjct: 26  KVVVVKYGGNAM-------TDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG 78

Query: 59  ------------------RGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINV 100
                                 V+         + +++ G  +  I      L       
Sbjct: 79  IEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRS 138

Query: 101 PTVILSSIFMPQVCEVFSCRNAV--SYLSQGKVVIFSGGTGNA-----FLTTDSAAALRA 153
            TV   +  +  V +V     A     ++ G++ + S    +A      +  D+AAA  A
Sbjct: 139 VTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVA 198

Query: 154 SEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-----LKVMDCASVVLA 208
             +GA+ +L  T +DG+Y+  P   +  +  D+ T  Q +         KV  C   V+ 
Sbjct: 199 EALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIG 258

Query: 209 RDCSIPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242
              S  II         +   L   +G G + ++ GE
Sbjct: 259 GVPSAHII--DGRVTHCVLVELFTDAGTG-TKVVRGE 292


>1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP
          synthesys, acylphosphate-making enzymes, open
          alpha/beta sheet; 2.80A {Enterococcus faecium} SCOP:
          c.73.1.1
          Length = 310

 Score = 35.4 bits (80), Expect = 0.013
 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 7  KRVLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          K++++ + G A+            ++ +  A +  +  +G  + +  G G
Sbjct: 3  KKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNG 52


>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
           transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
           PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
          Length = 456

 Score = 35.1 bits (80), Expect = 0.014
 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 55/281 (19%)

Query: 5   PY------KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--- 55
           PY        ++  + G  L G         ++N++ ADI  +   GI + ++ G     
Sbjct: 36  PYIRQMRGTTLVAGIDGRLLEG--------GTLNKLAADIGLLSQLGIRLVLIHGAYHFL 87

Query: 56  --------------NIFR---------GSQVVAENYLLCERSTVDSMGMLSTVINALALD 92
                            R           Q         E +   S+   +   +   + 
Sbjct: 88  DRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLVS 147

Query: 93  LALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGN------AFLTTD 146
                     VI  +          +   A+ +      +++    G+        L   
Sbjct: 148 GNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMV 207

Query: 147 SAAALRASEIGADVILKGTQVDGVYSADPRV--HASSTRFDSLTYNQFIEKGLKVMDCAS 204
            AAA  A  + A+ ++  T  DG+   D  +    S+    SL  +   E    +    +
Sbjct: 208 QAAASVAVSLQAEKLVYLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRRLISSAVA 267

Query: 205 VVLARDCSIPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242
            +      + I+  +  + G +   L   +GIG  T I+ E
Sbjct: 268 ALEGGVHRVQIL--NGAADGSLLQELFTRNGIG--TSIAKE 304


>3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target,
           transferase; 3.00A {Giardia lamblia atcc 50803}
          Length = 317

 Score = 34.3 bits (78), Expect = 0.025
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 13/67 (19%)

Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172
           +    +VI + G G             +A +  D A +L A  + +D ++  T V     
Sbjct: 185 IDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI 244

Query: 173 ADPRVHA 179
              +   
Sbjct: 245 NYKKPDE 251



 Score = 30.5 bits (68), Expect = 0.32
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 7  KRVLLKVSGEAL---AGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          K V++ + G A+        +     +V    ++I +++  G ++ +  G G
Sbjct: 6  KTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNG 57


>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
           regulation, transferase, cyanobacteria, transcription;
           HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
          Length = 321

 Score = 33.6 bits (76), Expect = 0.043
 Identities = 43/273 (15%), Positives = 83/273 (30%), Gaps = 48/273 (17%)

Query: 7   KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG------NIFRG 60
           + V++K  G A+          +    +  DI  +   G+   +V GGG          G
Sbjct: 50  RTVVVKYGGAAM-------KQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVG 102

Query: 61  SQVVAENYLLCERS-TVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV------ 113
            +    N L    + T++ + M+        +   +       V         V      
Sbjct: 103 IEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHD 162

Query: 114 ---------CEVFSCRNAVSYLSQGKVVIFSGGTGNA-----FLTTDSAAALRASEIGAD 159
                        +       L +G + + S    +       +  D+ A   A+ + A+
Sbjct: 163 QEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAE 222

Query: 160 VILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-------LKVMDCASVVLARDCS 212
            ++  T   G+     R  +   R +     + I +G        KV  C   +     +
Sbjct: 223 KLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRA 282

Query: 213 IPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242
             II      P  +   +   +GIG  T+I G 
Sbjct: 283 AHII--DGRIPHALLLEIFTDAGIG--TMIVGS 311


>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; 1.80A {Aeropyrum pernix K1}
          Length = 316

 Score = 33.0 bits (74), Expect = 0.058
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 7  KRVLLKVSGEAL---AGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          +  ++ + G A+              +V R  + IA+V A G    I  G G
Sbjct: 5  RLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNG 56


>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP
          synthesys, open alpha/beta sheet, phosphotransferase,
          transferase; HET: ADP; 1.39A {Enterococcus faecalis}
          PDB: 1b7b_A 2we4_A*
          Length = 310

 Score = 32.5 bits (73), Expect = 0.085
 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 7  KRVLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          K++++ + G A+            ++ +  A +  +  +G  + +  G G
Sbjct: 3  KKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNG 52


>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
          arginine biosynthesis, phosphoryl group transfer,
          protein crystallography; HET: NLG ANP; 1.5A
          {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A*
          1oha_A* 1ohb_A*
          Length = 258

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 7  KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
            +++K+ G  L          +++ R+ + +           ++V GG
Sbjct: 3  NPLIIKLGGVLLD-------SEEALERLFSALVNYRESHQRPLVIVHGG 44


>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
          kinase, phosphoryl group transfer, arginine metabolism,
          transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
          SCOP: c.73.1.2
          Length = 282

 Score = 31.7 bits (71), Expect = 0.16
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 7  KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          K  ++K  G A+          ++      DI  +   GI+  IV GGG
Sbjct: 22 KTFVIKFGGSAMK-------QENAKKAFIQDIILLKYTGIKPIIVHGGG 63


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.23
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 194 EK-GLKVMDCASVVLARDCSIPIIVFSIHS 222
           EK  LK +  AS+ L  D S P    +I +
Sbjct: 18  EKQALKKLQ-ASLKLYADDSAP--ALAIKA 44



 Score = 30.7 bits (68), Expect = 0.32
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 13/39 (33%)

Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLTTDSAAAL--RAS-E 155
           + A+  L Q  + +++          DSA AL  +A+ E
Sbjct: 19  KQALKKL-QASLKLYA---------DDSAPALAIKATME 47


>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
           endoplasmic reticulum, TRC40, ATP-binding, golgi
           apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
           PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
          Length = 354

 Score = 30.2 bits (67), Expect = 0.42
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 10/54 (18%)

Query: 130 KVVIFS--GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181
           K +     GG G    +   A  +  S+     +L    +      DP  + S 
Sbjct: 19  KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLL----IS----TDPAHNLSD 64


>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
           mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
           {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
           d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
           1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
           1q9i_A* 1lj1_A*
          Length = 571

 Score = 29.1 bits (64), Expect = 0.93
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 9/41 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169
           VV+   G+G A  +    AA+ A++ GA VIL  K   + G
Sbjct: 130 VVV---GSGGAGFS----AAISATDSGAKVILIEKEPVIGG 163


>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
           FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
           c.3.1.4 d.168.1.1
          Length = 566

 Score = 28.7 bits (63), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 7/32 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
           +V+   G G+A       A+L A + GA+VIL
Sbjct: 125 LVV---GAGSAGFN----ASLAAKKAGANVIL 149


>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin,
           2-isocyano-6,7- dihydroxycoumarin, transferase; HET:
           PGE; 2.10A {Pseudomonas aeruginosa}
          Length = 330

 Score = 28.6 bits (64), Expect = 1.5
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 15/58 (25%)

Query: 4   FPYK-RVLLKVSG------EALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG 54
           FP K     KV        E L+        +  +N +C  I   YA G +I +   G
Sbjct: 67  FPAKSPNPGKVLDSRPDMAERLS--------LSFLNHLCQRIQLFYAPGAKITVCSDG 116


>3eul_A Possible nitrate/nitrite response transcriptional regulatory
           protein NARL (DNA-binding...; central beta strand
           flanked by alpha helices; 1.90A {Mycobacterium
           tuberculosis}
          Length = 152

 Score = 28.3 bits (63), Expect = 1.5
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 73  RSTVDSMGMLSTVINALALDLALRKI--NVPTVILSSIFMPQVCEVFSCRNAVSYLSQGK 130
              +   G ++ V  A     AL  I  ++P V L    MP +          SY    +
Sbjct: 32  VRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGA-DVILK 163
           V++ S          + A   +A + GA   +LK
Sbjct: 92  VLLISA-------HDEPAIVYQALQQGAAGFLLK 118


>2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; 1.92A {Thermus thermophilus HB8}
          Length = 269

 Score = 28.4 bits (62), Expect = 1.5
 Identities = 7/31 (22%), Positives = 17/31 (54%)

Query: 25 GVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55
          G +  +   +  D A ++ +G+++ +V GG 
Sbjct: 8  GAEGINYEAVAKDAASLWKEGVKLLLVHGGS 38


>1w8i_A Hypothetical protein AF1683; structural genomics, unknown function,
           PSI, protein structure initiative, MCSG; 2.10A
           {Archaeoglobus fulgidus} SCOP: c.120.1.1
          Length = 156

 Score = 28.1 bits (62), Expect = 1.9
 Identities = 15/77 (19%), Positives = 31/77 (40%)

Query: 142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMD 201
            +  ++   L+  ++ AD  L+G    GV +          +   +   +  EKG    D
Sbjct: 44  HILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDEVERKALEVFKARVYEKGFSYTD 103

Query: 202 CASVVLARDCSIPIIVF 218
             S V+A +  + +I +
Sbjct: 104 AISEVVAEELKLKLISY 120


>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein;
           NMR {Caenorhabditis elegans}
          Length = 91

 Score = 28.1 bits (62), Expect = 2.1
 Identities = 6/25 (24%), Positives = 8/25 (32%)

Query: 110 MPQVCEVFSCRNAVSYLSQGKVVIF 134
           MP  C   +C+    Y        F
Sbjct: 3   MPTTCGFPNCKFRSRYRGLEDNRHF 27


>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
          biosynthesis, FEED-BACK inhibition, hexamer,
          transferase; HET: NLG ADP; 2.95A {Pseudomonas
          aeruginosa} SCOP: c.73.1.2
          Length = 300

 Score = 27.4 bits (60), Expect = 2.8
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 7  KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN 56
          K +++K  G A+          +       D+  + A GI   +V GGG 
Sbjct: 27 KTLVIKYGGNAM-------ESEELKAGFARDVVLMKAVGINPVVVHGGGP 69


>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
           4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
           HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
           c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
          Length = 660

 Score = 27.2 bits (59), Expect = 3.0
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
           +VI   G G A L     AA+   + G   I+
Sbjct: 9   LVI---GGGLAGLR----AAVATQQKGLSTIV 33


>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
           {Debaryomyces hansenii}
          Length = 348

 Score = 27.5 bits (60), Expect = 3.0
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%)

Query: 130 KVVIFS--GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181
           K +     GG G    ++  A  L  ++     +L    +      DP  + S 
Sbjct: 19  KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLL----IS----TDPAHNLSD 64


>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
           2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
           d.168.1.1 PDB: 1d4e_A* 1d4c_A*
          Length = 572

 Score = 27.5 bits (60), Expect = 3.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 9/41 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169
           V+I SGG G        AAA+ A + GA VIL  K     G
Sbjct: 130 VIIGSGGAG-------LAAAVSARDAGAKVILLEKEPIPGG 163


>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
           {Sulfolobus tokodaii}
          Length = 472

 Score = 26.8 bits (58), Expect = 4.8
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
            +I   G+G A L+    A +     G  V L
Sbjct: 3   YII---GSGIAGLS----AGVALRRAGKKVTL 27


>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
           cereus} SCOP: c.3.1.8 e.74.1.1
          Length = 447

 Score = 26.3 bits (56), Expect = 6.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 9/41 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169
           +VI   G G + L     AA+ A+E GA+V+L  KG ++  
Sbjct: 30  IVI---GGGPSGLM----AAIGAAEEGANVLLLDKGNKLGR 63


>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
           dehydrogenase activity, cell inner membrane,
           tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
           {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A*
           2wdv_A*
          Length = 588

 Score = 26.3 bits (57), Expect = 6.6
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
           VVI   G G A +     AAL+ S+ G    L
Sbjct: 11  VVI---GAGGAGMR----AALQISQSGQTCAL 35


>1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins
           with globular proteins, OB-fold, TIMP, cell adhesion;
           1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A
          Length = 131

 Score = 26.0 bits (57), Expect = 8.0
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 10/35 (28%)

Query: 152 RASEIGADVILKGT--------QVDGVYSADPRVH 178
           R  E  A+V+L GT         V   YS   RV 
Sbjct: 9   REEE--ANVVLTGTVEEIMNVDPVHHTYSCKVRVW 41


>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics,
           BSGC structure funded by NIH, protein structure
           initiative, PSI; 2.80A {Escherichia coli} SCOP:
           c.114.1.1
          Length = 117

 Score = 26.1 bits (57), Expect = 8.1
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 131 VVIFSG---GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
           V++ +G   G+ + F +   A ALR  E   D+ L     D V +               
Sbjct: 5   VIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMS-DAVTAGLRGQKPGEGYNIQQ 63

Query: 188 TYNQFIEKGLKVMDCASVVLAR--DCSIPIIVFSIHSPGGIW 227
                  + + V  C +    R       I    I +   + 
Sbjct: 64  MLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELA 105


>2qsj_A DNA-binding response regulator, LUXR family; structural genomics,
           PSI-2, protein structure initiative; 2.10A {Silicibacter
           pomeroyi dss-3}
          Length = 154

 Score = 26.1 bits (57), Expect = 8.2
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 90  ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAA 149
           AL   L   N   +IL  + +P    +        +     V + SG        TD   
Sbjct: 41  ALAF-LEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISG-------ETDHEL 92

Query: 150 ALRASEIGA-DVILK 163
              A E GA   I K
Sbjct: 93  IRAALEAGADGFIPK 107


>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
           protein, heme protein, iron sulfur protein,
           oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
           1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
           2h89_A* 1zoy_A* 1zp0_A*
          Length = 621

 Score = 25.9 bits (56), Expect = 8.6
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)

Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
           VV+ +GG G         AA   SE G +   
Sbjct: 22  VVVGAGGAG-------LRAAFGLSEAGFNTAC 46


>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; 3.00A {Lactobacillus plantarum}
          Length = 341

 Score = 25.7 bits (56), Expect = 8.8
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 122 AVSYLSQG-KVVIFSGGTGNA 141
             ++ +Q  K+V+  GGTG  
Sbjct: 3   KYTFKTQRPKIVVIGGGTGLP 23


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,035,678
Number of extensions: 90533
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 68
Length of query: 242
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 152
Effective length of database: 3,511,270
Effective search space: 533713040
Effective search space used: 533713040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)