RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric regulation, ATP-binding, cytoplasm kinase, nucleotide-binding; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 Score = 168 bits (425), Expect = 1e-42 Identities = 111/242 (45%), Positives = 159/242 (65%), Gaps = 3/242 (1%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 MS+ Y+R+LLK+SGEAL G +G+D +NR+ ++ E G ++ +V+GGGNIFRG Sbjct: 4 MSELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 + + A D MGML+TVINALA+ AL K+ ++S+I + VCE F R Sbjct: 64 AGLAASGMDRVTG---DHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRR 120 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 A+ +L +G++ IF+ GTGN F TTDS AALRA EIGAD++LK T+VDGVY DP+ H+ Sbjct: 121 RAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSD 180 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + R+DSLTY++ I +GL+VMD A+ LARD +P+ +F + PG + L G T++ Sbjct: 181 AVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQ 240 Query: 241 GE 242 G Sbjct: 241 GR 242 >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 Score = 166 bits (420), Expect = 5e-42 Identities = 93/235 (39%), Positives = 142/235 (60%), Gaps = 4/235 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 Y RVLLK+ GE G G+D D V ++ IA+V G++I +V+GGGN FRG+Q+ Sbjct: 50 YSRVLLKLGGEMFGG-GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ 108 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 ER+ D MGML TV+N+LAL L K + T + ++I M QV E + AV + Sbjct: 109 LG---MERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRH 165 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 L +G+VVIF G G + +TD+ AA RA EIGADV+L VDGV++ DPRV+ + Sbjct: 166 LEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLT 225 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 ++++ + +++GL+V D + L D +PI+VF++ + G I + G T+++ Sbjct: 226 AVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 Score = 148 bits (374), Expect = 1e-36 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 3/239 (1%) Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64 PYKRVL+K+SG ALA +G + + I +I + GIE+ IV+GGGNIFRG Sbjct: 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE 70 Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVS 124 + + + + + + + K N +++SI V E + AV Sbjct: 71 EWGI--DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVH 128 Query: 125 YLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGT-QVDGVYSADPRVHASSTR 183 +L G +VIF GG G F+TTD + RA E+ +D IL VDGV+++DP+ + S+ Sbjct: 129 HLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKM 188 Query: 184 FDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242 + L YN + + ++VMD A+++LARD ++P VF+ PG + G T+I+ + Sbjct: 189 YRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 Score = 145 bits (365), Expect = 1e-35 Identities = 89/244 (36%), Positives = 145/244 (59%), Gaps = 5/244 (2%) Query: 1 MSDFP-YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59 MS P Y+R+L+K+SGEALAG G G+DI +V I +IAEV+ G++I +V+GGGN++R Sbjct: 1 MSLEPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWR 60 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 G +R D GML TV+NAL + +L+ V T + ++I M V E + Sbjct: 61 GEPAADAG---MDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIR 117 Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLTTDSA-AALRASEIGADVILKGTQVDGVYSADPRVH 178 A+ +L + ++V+F G G+ + +TD+ A A +++ VDGVY+ADP+ Sbjct: 118 GRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKD 177 Query: 179 ASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 A++ +FD LT+ + I++GLK+MD + L+ D I ++VF+++ G I + G T Sbjct: 178 ANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTT 237 Query: 239 ISGE 242 +S + Sbjct: 238 VSNK 241 >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 Score = 144 bits (364), Expect = 2e-35 Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 3/240 (1%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 +S YKR+LLK+SGEAL G G G+D ++R+ +I E+ G+E+ +V+GGGN+FRG Sbjct: 3 LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRG 62 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 +++ R D MGML+TV+N LA+ +L + +V ++S+ + +C+ ++ Sbjct: 63 AKLAKAG---MNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 A+ L + +VVIFS GTGN F TTDS A LR EI ADV+LK T+VDGVY DP + Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPD 179 Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + + +L+Y + I+K LKVMD ++ LARD +PI VF++ PG + ++G T I Sbjct: 180 AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239 >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 Score = 142 bits (358), Expect = 7e-35 Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 3/234 (1%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 YKRVLLK+SGE+L G FG++ D++ + +IAEV G+++GIVVGGGNIFRG A Sbjct: 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA 66 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 + +R+T D MGM++TV+NALAL A + + + S++ M Q+ E ++ A+ Y Sbjct: 67 GS---MDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQY 123 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185 L +GKVVIF+ GTGN F TTD+AAALR +E+ DV+LK T VDGVY+ADP+ S+TR++ Sbjct: 124 LEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYE 183 Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 ++T+++ + K LKVMD + L R+ + I+VF I G + ++G T++ Sbjct: 184 TITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237 >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 Score = 135 bits (339), Expect = 1e-32 Identities = 85/236 (36%), Positives = 141/236 (59%), Gaps = 5/236 (2%) Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65 +R+++K+SG L +D +N + I ++ K I IV+GGGNI+RGS Sbjct: 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVS-IVLGGGNIWRGSI--- 79 Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125 L +R+ D+MGM++T+IN LAL+ AL +NV T++LS+I ++ S N Sbjct: 80 AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKA 139 Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184 + + +V+IF GTG + TTDS AA+RA+E + +IL G VDGVY +DP+++ ++ + Sbjct: 140 IEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFY 199 Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 + +T+N + + LKVMD ++ L ++ +I ++VF+I P I L + TI+S Sbjct: 200 EHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 Score = 116 bits (291), Expect = 4e-27 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 30/242 (12%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 ++LK+SG+ ++D++ + I E+ G +GIV GGG+ R +A Sbjct: 2 NIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLARE 56 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + E +D +G+ ++ +NA + + S + + S + S Sbjct: 57 IGIGEA-YLDLLGIWASRLNAYLV------------MFSLQDLAYMHVPQSLEEFIQDWS 103 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 GKVV+ +T + AAL A + ++ T VDGVY DPR++A L Sbjct: 104 HGKVVVTG--GFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHL 161 Query: 188 TYNQFIE----------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRST 237 T + +++D ++ + I +IV + I L G S+ Sbjct: 162 TTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 Query: 238 II 239 II Sbjct: 222 II 223 >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 Score = 106 bits (265), Expect = 5e-24 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 33/247 (13%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 ++K+ G + D++ + ++ ++ + + I+ G G R V + Sbjct: 41 LQVVKIGGRVMDR------GADAILPLVEELRKLLPEH-RLLILTGAGVRARHVFSVGLD 93 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 L ++ + N L L + V +LS Sbjct: 94 LGL-PVGSLAPLAASEAGQNGHILAAMLASEG----------VSYVEHPTVADQLAIHLS 142 Query: 128 QGKVVIFSG----------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177 + V+ S G+ D+ A L A GA + VDG+Y+ADP Sbjct: 143 ATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNG 202 Query: 178 --HASSTRFDSLTYNQFIE-KGLKVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSG 232 + + + +G +D V+ + V + PG + L G Sbjct: 203 PDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRG 262 Query: 233 IGRSTII 239 T+I Sbjct: 263 EHVGTLI 269 >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.73.1.3 Length = 219 Score = 105 bits (262), Expect = 1e-23 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 33/242 (13%) Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAEN 67 +V+L + G L+ + + + I V + ++ +VVGGG + R A Sbjct: 2 KVVLSLGGSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54 Query: 68 YLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLS 127 + D +G+ +T +NA+ L A+ A Sbjct: 55 LGA-SETFCDYIGIAATRLNAMLLISAIP-------------SAAKKVPVDFMEAEELSK 100 Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 +VV+ G TTD+ AAL A I ADV + T VDGVYSADP+ S+ ++D L Sbjct: 101 LYRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRL 158 Query: 188 TYNQFIEKGLK---------VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238 + Q +E + V+D + + I V +P I + G T+ Sbjct: 159 SPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTV 217 Query: 239 IS 240 I+ Sbjct: 218 IA 219 >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 Score = 105 bits (262), Expect = 1e-23 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 12/236 (5%) Query: 11 LKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLL 70 +K+ G+++ +V + +I + I G G R +A L Sbjct: 41 IKIGGQSVIDRGR-----AAVYPLVDEIVAARKNHKLL-IGTGAGTRARHLYSIAAGLGL 94 Query: 71 CERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGK 130 + +G NA L L K +P V + + + S + K Sbjct: 95 -PAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYK 153 Query: 131 VVIFSGGTGN-AFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTY 189 + + G TD+ L A + G ++ DG+Y+A+P+ +T ++ Sbjct: 154 LWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISV 213 Query: 190 NQFIEKGL--KVMD--CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISG 241 ++ KGL +++ ++ + + V + PG + L+G TII+ Sbjct: 214 DEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 Score = 102 bits (254), Expect = 7e-23 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 28/248 (11%) Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60 + + R++ + G L + DID + I + +V ++ E+ +VVGGG + R Sbjct: 14 VPRGSHMRIVFDIGGSVLVPENP---DIDFIKEIAYQLTKV-SEDHEVAVVVGGGKLARK 69 Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120 VAE + D +G+ T NA+ L ALR+ P V E F Sbjct: 70 YIEVAE-KFNSSETFKDFIGIQITRANAMLLIAALRE----------KAYPVVVEDFWEA 118 Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180 L I G + TTD+ AAL A + AD+++ T VDGVY+ADP+ + Sbjct: 119 WKAVQL----KKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPT 174 Query: 181 STRFDSLTYNQFIE---------KGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLS 231 + + + + +E V+D + + I IV ++ + Sbjct: 175 AKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIK 234 Query: 232 GIGRSTII 239 G T I Sbjct: 235 GDHNGTTI 242 >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 Score = 102 bits (254), Expect = 1e-22 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 22/252 (8%) Query: 5 PYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQV 63 P+ ++LK+ G + S ++ I ++ ++ VV GG F + Sbjct: 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLS----GIEDLVCVVHGGGSFGHIKA 57 Query: 64 VAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPT---VILSSIFMPQVCEVFSCR 120 + L ++ S+G + LDL + + I I + F Sbjct: 58 MEFG-LPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYT 116 Query: 121 NAVSYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSAD 174 + Y+ G V + G + D A A + DV + T VDG+YS D Sbjct: 117 PLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKD 176 Query: 175 PRVHASSTRFDSLTYNQFIEK-------GLKVMDCASVVLARDCSIPIIVFSIHSPGGIW 227 P+ + + + N ++ G+ + V + + + + + P I Sbjct: 177 PKRNPDAVLLRDIDTNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIG 236 Query: 228 GGLSGIGRSTII 239 T+I Sbjct: 237 DIGKESFIGTVI 248 >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 Score = 86.0 bits (212), Expect = 6e-18 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 25/260 (9%) Query: 7 KRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVY------AKGIEIGIVVGGGNIFR 59 +LK+ G L+ + + + D++ RI +I K I++ +V GGG Sbjct: 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGH 66 Query: 60 G-SQVVAENYLLCERSTVDSMGMLSTVINALALDL----ALRKINVPTVILSSIFMPQVC 114 ++ + + G + L+ ++P V + Sbjct: 67 PVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFG 126 Query: 115 EVFSCRNAV--SYLSQGKVVIFSG------GTGNAFLTTDSAAALRASEIGADVILKGTQ 166 + + L + V + G G ++ D A+E+ AD+IL T Sbjct: 127 DKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATD 186 Query: 167 VDGVYSADPRV-HASSTRFDSLTYNQFIEKGLKV---MDCASVVLARDCSIPIIVFSIHS 222 VDGV + + + + V M + + R VF+ + Sbjct: 187 VDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYK-IEMIRKNKCRGFVFNGNK 245 Query: 223 PGGIWGGLSGIGRSTIISGE 242 I+ L G T I Sbjct: 246 ANNIYKALLGEVEGTEIDFS 265 >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 Score = 75.6 bits (185), Expect = 1e-14 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 34/269 (12%) Query: 6 YKRVLLKVSGEALAGISG--FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI------ 57 ++LK+ G + +D D++ RI ++I + I V G G+ Sbjct: 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMI--VHGAGSFGHPFAG 59 Query: 58 -FRGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTV--ILSSIFMPQVC 114 +R + L R ++ + AL +P V S+ Sbjct: 60 EYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAG 119 Query: 115 EVFSCRNAV--SYLSQGKVVIFSG--------GTGNAFLTTDSAAALRASEIGADVILKG 164 + ++ SYL +G V + G + ++ D + + + ++ G Sbjct: 120 RISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILG 179 Query: 165 TQVDGVYSADPRVHASSTRFDSLTYN--QFIEKGLKVMDC--------ASVVLARDCSIP 214 T VDGVY+ +P+ H + D + G D ++L + + Sbjct: 180 TDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVE 239 Query: 215 IIVFSIHSPGGIWGGLSG-IGRSTIISGE 242 + + PG I L G R T I+G+ Sbjct: 240 SEIINAAVPGNIERALLGEEVRGTRITGK 268 >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* Length = 286 Score = 64.1 bits (155), Expect = 3e-11 Identities = 24/205 (11%), Positives = 58/205 (28%), Gaps = 10/205 (4%) Query: 1 MSDFPYKRVLLKVSGEALAGISG-FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFR 59 S + +KV G + +D D+V R + A + +++ GG F Sbjct: 18 GSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFG 77 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 + + + V A L ++ + L+++ + Sbjct: 78 HGAIRDHDSTHAFSLAGLTEATFE-VKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLR 136 Query: 120 RNAVSYLSQGKVVIFSGG-------TGNAFLTTDSAAALRASEIGADV-ILKGTQVDGVY 171 + + + G ++D + + + ++ T VDG+ Sbjct: 137 SEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIV 196 Query: 172 SADPRVHASSTRFDSLTYNQFIEKG 196 + D+ + Q Sbjct: 197 TDGAGGDTILPEVDARSPEQAYAAL 221 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 53.8 bits (129), Expect = 3e-08 Identities = 51/274 (18%), Positives = 78/274 (28%), Gaps = 122/274 (44%) Query: 10 LLKVSG---EALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 +L +S E + ++ N + K +EI +V G N+ VV+ Sbjct: 338 MLSISNLTQEQVQDY------VNKTNS---HLPA--GKQVEISLVNGAKNL-----VVSG 381 Query: 67 NYL-LCERSTVDSMGMLSTVINALALDLALRKINVPTVILSS-IFMPQVCEVFSCRNAVS 124 L L+L LRK P+ + S I P FS R Sbjct: 382 PPQSLY------------------GLNLTLRKAKAPSGLDQSRI--P-----FSER---- 412 Query: 125 YLSQGKVVIFSGGTGNAFL--TT-------DSAAALRASEIGADVILKGTQVDG------ 169 K+ N FL + A+ L I D++ + Sbjct: 413 -----KLKFS-----NRFLPVASPFHSHLLVPASDL----INKDLVKNNVSFNAKDIQIP 458 Query: 170 VYS----ADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVV---LARDCSIP---IIVFS 219 VY +D RV + S + + V I+ F Sbjct: 459 VYDTFDGSDLRVLSGSI-SERIVD----------CIIRLPVKWETT--TQFKATHILDFG 505 Query: 220 IHSPGGIWGGLSGIG------------RSTIISG 241 PGG SG+G R I++G Sbjct: 506 ---PGGA----SGLGVLTHRNKDGTGVR-VIVAG 531 Score = 41.9 bits (98), Expect = 1e-04 Identities = 47/271 (17%), Positives = 74/271 (27%), Gaps = 120/271 (44%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG-GNIFRGSQVVA 65 KR K S AL +V A++ A + GG GN Sbjct: 134 KRPFDKKSNSAL---------FRAVGE---GNAQLVA-------IFGGQGNT-------- 166 Query: 66 ENYL--LCE---------RSTVDSMGMLSTVINALA-------------LDLA--LRKIN 99 ++Y L + + ++ L L++ L + Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAET---LSELIRTTLDAEKVFTQGLNILEWLENPS 223 Query: 100 -VPTV--ILSS-IFMP-----QVCE-VFSCRNA-------VSYL------SQGKVVIFSG 136 P +LS I P Q+ V + + SYL SQG V Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---- 279 Query: 137 GTGNAFL-TTDS-----AAALRASE----IGADVILKGTQVDGVYSADPRVHASSTRFDS 186 + TDS + +A IG ++ + S P S DS Sbjct: 280 ---AVAIAETDSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPP-----SILEDS 327 Query: 187 LTYNQFIEKGLKV---MDCASVVLARDCSIP 214 +E V M S+ + + Sbjct: 328 ------LENNEGVPSPM--LSI---SNLTQE 347 Score = 28.0 bits (62), Expect = 1.9 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 24/86 (27%) Query: 163 KGTQVDGVYSA-------DPRV-----------HASSTRFDS----LTYNQFIEKGLKVM 200 KG ++ YSA D ++ H++S F S L+ QF + L +M Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739 Query: 201 DCASVV-LARDCSIPI-IVFSIHSPG 224 + A+ L IP F+ HS G Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLG 1765 >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 Score = 53.1 bits (126), Expect = 6e-08 Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 8/184 (4%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 KR+++KV ++ + + + + A +A+ + E+ +V +++ + Sbjct: 2 KRIVVKVGSHVISEENTL--SFERLKNLVAFLAK-LMEKYEVILVTSAAISAGHTKLDID 58 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 L + + ++G + L K+ ++ F + + + Sbjct: 59 RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMI 118 Query: 127 SQGKVVIFSGG-----TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 + G + I + F DS +A AD+++ + +DG Y +P + + Sbjct: 119 NLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDA 178 Query: 182 TRFD 185 R + Sbjct: 179 KRLE 182 >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 Score = 52.9 bits (126), Expect = 7e-08 Identities = 41/248 (16%), Positives = 63/248 (25%), Gaps = 74/248 (29%) Query: 7 KRVLLKVSGEALAGISGFG---VDIDSVNRICADIAEVYAKGIEIGIVV----------- 52 KRV++ + G AL G +D+V + IAE+ A+G E+ I Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 53 --GGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINAL-------------------AL 91 G G + + + N L Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 92 DLALRKINVPTVILSS--------------------------IFMPQVCEVFSCRNAVSY 125 D A + P + P Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172 + +G +VI SGG G A + D A A E+ AD+ + T V+G Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 173 ADPRVHAS 180 Sbjct: 243 YYGTEKEQ 250 >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 Score = 50.3 bits (120), Expect = 4e-07 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 13/114 (11%) Query: 125 YLSQGKVVIFSGGTG----NAFLTT------DSAAALRASEIGADVILKGTQVDGVYSAD 174 L +GK+ I +G G +TT D+ A A+ + ADV + VDGVY+AD Sbjct: 124 ALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 Query: 175 PRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 PR+ ++ + + L++ + +E G K++ SV AR ++P+ V S +S Sbjct: 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDP 237 >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 Score = 46.8 bits (111), Expect = 4e-06 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%) Query: 124 SYLSQGKVVIFSGGTGNA-----FLTT------DSAAALRASEIGADVILKGTQVDGVYS 172 +L +GKVV+ +G G + +TT D++A A+ + AD T V G+ + Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILT 182 Query: 173 ADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223 DPR+ + +T ++ +E G KV+ +V +AR+ IP++V S S Sbjct: 183 TDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD 236 >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 Score = 40.2 bits (93), Expect = 4e-04 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 49/273 (17%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG-------NIFR 59 K +++K G A+ + + + +D+ + G+ +V GGG Sbjct: 37 KTIVVKYGGAAMT-------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN 89 Query: 60 GSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSC 119 + + + +T++ + M+ L + V LS + Sbjct: 90 IPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVP 149 Query: 120 RN----------------AVSYLSQGKVVIFSGGTGNA-----FLTTDSAAALRASEIGA 158 + + G + + + + + D+ A A+ +GA Sbjct: 150 NSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGA 209 Query: 159 DVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-------LKVMDCASVVLARDC 211 + ++ T V G+ + D + IE G KV C + Sbjct: 210 EKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVK 269 Query: 212 SIPIIVFSIHSPGGIWGGL---SGIGRSTIISG 241 + II + + G G T+I+G Sbjct: 270 TASII--DGRRQHSLLHEIMSDEGAG--TMITG 298 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* Length = 367 Score = 38.1 bits (88), Expect = 0.002 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 10/187 (5%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66 + +++K+ L G S ++ + + A+++A G I ++V G I G + + Sbjct: 5 QTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRI-VIVTSGAIAAGREHLGY 62 Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126 L ++ + + + + + + Sbjct: 63 PELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLR 122 Query: 127 SQGKVVIFSGGTGNAFLTTD--------SAAALRASEIGADVILKGTQVDGVYSADPRVH 178 + + N + T + +AL A GAD +L T G+Y+ADPR + Sbjct: 123 ALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSN 182 Query: 179 ASSTRFD 185 + Sbjct: 183 PQAELIK 189 >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2 Length = 299 Score = 36.0 bits (82), Expect = 0.007 Identities = 55/277 (19%), Positives = 94/277 (33%), Gaps = 51/277 (18%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIF-------- 58 K V++K G A+ D AD+A + GI +V GGG Sbjct: 26 KVVVVKYGGNAM-------TDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG 78 Query: 59 ------------------RGSQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINV 100 V+ + +++ G + I L Sbjct: 79 IEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRS 138 Query: 101 PTVILSSIFMPQVCEVFSCRNAV--SYLSQGKVVIFSGGTGNA-----FLTTDSAAALRA 153 TV + + V +V A ++ G++ + S +A + D+AAA A Sbjct: 139 VTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVA 198 Query: 154 SEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-----LKVMDCASVVLA 208 +GA+ +L T +DG+Y+ P + + D+ T Q + KV C V+ Sbjct: 199 EALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIG 258 Query: 209 RDCSIPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242 S II + L +G G + ++ GE Sbjct: 259 GVPSAHII--DGRVTHCVLVELFTDAGTG-TKVVRGE 292 >1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP synthesys, acylphosphate-making enzymes, open alpha/beta sheet; 2.80A {Enterococcus faecium} SCOP: c.73.1.1 Length = 310 Score = 35.4 bits (80), Expect = 0.013 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 7 KRVLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 K++++ + G A+ ++ + A + + +G + + G G Sbjct: 3 KKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNG 52 >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456 Score = 35.1 bits (80), Expect = 0.014 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 55/281 (19%) Query: 5 PY------KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG--- 55 PY ++ + G L G ++N++ ADI + GI + ++ G Sbjct: 36 PYIRQMRGTTLVAGIDGRLLEG--------GTLNKLAADIGLLSQLGIRLVLIHGAYHFL 87 Query: 56 --------------NIFR---------GSQVVAENYLLCERSTVDSMGMLSTVINALALD 92 R Q E + S+ + + + Sbjct: 88 DRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLVS 147 Query: 93 LALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGN------AFLTTD 146 VI + + A+ + +++ G+ L Sbjct: 148 GNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMV 207 Query: 147 SAAALRASEIGADVILKGTQVDGVYSADPRV--HASSTRFDSLTYNQFIEKGLKVMDCAS 204 AAA A + A+ ++ T DG+ D + S+ SL + E + + Sbjct: 208 QAAASVAVSLQAEKLVYLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRRLISSAVA 267 Query: 205 VVLARDCSIPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242 + + I+ + + G + L +GIG T I+ E Sbjct: 268 ALEGGVHRVQIL--NGAADGSLLQELFTRNGIG--TSIAKE 304 >3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 Score = 34.3 bits (78), Expect = 0.025 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 13/67 (19%) Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVYS 172 + +VI + G G +A + D A +L A + +D ++ T V Sbjct: 185 IDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI 244 Query: 173 ADPRVHA 179 + Sbjct: 245 NYKKPDE 251 Score = 30.5 bits (68), Expect = 0.32 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 7 KRVLLKVSGEAL---AGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 K V++ + G A+ + +V ++I +++ G ++ + G G Sbjct: 6 KTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNG 57 >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Length = 321 Score = 33.6 bits (76), Expect = 0.043 Identities = 43/273 (15%), Positives = 83/273 (30%), Gaps = 48/273 (17%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG------NIFRG 60 + V++K G A+ + + DI + G+ +V GGG G Sbjct: 50 RTVVVKYGGAAM-------KQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVG 102 Query: 61 SQVVAENYLLCERS-TVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQV------ 113 + N L + T++ + M+ + + V V Sbjct: 103 IEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHD 162 Query: 114 ---------CEVFSCRNAVSYLSQGKVVIFSGGTGNA-----FLTTDSAAALRASEIGAD 159 + L +G + + S + + D+ A A+ + A+ Sbjct: 163 QEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAE 222 Query: 160 VILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG-------LKVMDCASVVLARDCS 212 ++ T G+ R + R + + I +G KV C + + Sbjct: 223 KLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRA 282 Query: 213 IPIIVFSIHSPGGIWGGL---SGIGRSTIISGE 242 II P + + +GIG T+I G Sbjct: 283 AHII--DGRIPHALLLEIFTDAGIG--TMIVGS 311 >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Length = 316 Score = 33.0 bits (74), Expect = 0.058 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%) Query: 7 KRVLLKVSGEAL---AGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 + ++ + G A+ +V R + IA+V A G I G G Sbjct: 5 RLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNG 56 >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 Score = 32.5 bits (73), Expect = 0.085 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 7 KRVLLKVSGEALAGISGFG-VDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 K++++ + G A+ ++ + A + + +G + + G G Sbjct: 3 KKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNG 52 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* Length = 258 Score = 32.0 bits (71), Expect = 0.11 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 7/49 (14%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 +++K+ G L +++ R+ + + ++V GG Sbjct: 3 NPLIIKLGGVLLD-------SEEALERLFSALVNYRESHQRPLVIVHGG 44 >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Length = 282 Score = 31.7 bits (71), Expect = 0.16 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 7/49 (14%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 K ++K G A+ ++ DI + GI+ IV GGG Sbjct: 22 KTFVIKFGGSAMK-------QENAKKAFIQDIILLKYTGIKPIIVHGGG 63 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.23 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%) Query: 194 EK-GLKVMDCASVVLARDCSIPIIVFSIHS 222 EK LK + AS+ L D S P +I + Sbjct: 18 EKQALKKLQ-ASLKLYADDSAP--ALAIKA 44 Score = 30.7 bits (68), Expect = 0.32 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 13/39 (33%) Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLTTDSAAAL--RAS-E 155 + A+ L Q + +++ DSA AL +A+ E Sbjct: 19 KQALKKL-QASLKLYA---------DDSAPALAIKATME 47 >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* Length = 354 Score = 30.2 bits (67), Expect = 0.42 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 10/54 (18%) Query: 130 KVVIFS--GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 K + GG G + A + S+ +L + DP + S Sbjct: 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLL----IS----TDPAHNLSD 64 >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 Score = 29.1 bits (64), Expect = 0.93 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 9/41 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169 VV+ G+G A + AA+ A++ GA VIL K + G Sbjct: 130 VVV---GSGGAGFS----AAISATDSGAKVILIEKEPVIGG 163 >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 Score = 28.7 bits (63), Expect = 1.4 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 7/32 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 +V+ G G+A A+L A + GA+VIL Sbjct: 125 LVV---GAGSAGFN----ASLAAKKAGANVIL 149 >3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7- dihydroxycoumarin, transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa} Length = 330 Score = 28.6 bits (64), Expect = 1.5 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 15/58 (25%) Query: 4 FPYK-RVLLKVSG------EALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG 54 FP K KV E L+ + +N +C I YA G +I + G Sbjct: 67 FPAKSPNPGKVLDSRPDMAERLS--------LSFLNHLCQRIQLFYAPGAKITVCSDG 116 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 Score = 28.3 bits (63), Expect = 1.5 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 10/94 (10%) Query: 73 RSTVDSMGMLSTVINALALDLALRKI--NVPTVILSSIFMPQVCEVFSCRNAVSYLSQGK 130 + G ++ V A AL I ++P V L MP + SY + Sbjct: 32 VRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91 Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGA-DVILK 163 V++ S + A +A + GA +LK Sbjct: 92 VLLISA-------HDEPAIVYQALQQGAAGFLLK 118 >2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Thermus thermophilus HB8} Length = 269 Score = 28.4 bits (62), Expect = 1.5 Identities = 7/31 (22%), Positives = 17/31 (54%) Query: 25 GVDIDSVNRICADIAEVYAKGIEIGIVVGGG 55 G + + + D A ++ +G+++ +V GG Sbjct: 8 GAEGINYEAVAKDAASLWKEGVKLLLVHGGS 38 >1w8i_A Hypothetical protein AF1683; structural genomics, unknown function, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1 Length = 156 Score = 28.1 bits (62), Expect = 1.9 Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMD 201 + ++ L+ ++ AD L+G GV + + + + EKG D Sbjct: 44 HILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDEVERKALEVFKARVYEKGFSYTD 103 Query: 202 CASVVLARDCSIPIIVF 218 S V+A + + +I + Sbjct: 104 AISEVVAEELKLKLISY 120 >2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans} Length = 91 Score = 28.1 bits (62), Expect = 2.1 Identities = 6/25 (24%), Positives = 8/25 (32%) Query: 110 MPQVCEVFSCRNAVSYLSQGKVVIF 134 MP C +C+ Y F Sbjct: 3 MPTTCGFPNCKFRSRYRGLEDNRHF 27 >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Length = 300 Score = 27.4 bits (60), Expect = 2.8 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%) Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGN 56 K +++K G A+ + D+ + A GI +V GGG Sbjct: 27 KTLVIKYGGNAM-------ESEELKAGFARDVVLMKAVGINPVVVHGGGP 69 >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660 Score = 27.2 bits (59), Expect = 3.0 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 +VI G G A L AA+ + G I+ Sbjct: 9 LVI---GGGLAGLR----AAVATQQKGLSTIV 33 >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348 Score = 27.5 bits (60), Expect = 3.0 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%) Query: 130 KVVIFS--GGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASS 181 K + GG G ++ A L ++ +L + DP + S Sbjct: 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLL----IS----TDPAHNLSD 64 >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 Score = 27.5 bits (60), Expect = 3.2 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 9/41 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169 V+I SGG G AAA+ A + GA VIL K G Sbjct: 130 VIIGSGGAG-------LAAAVSARDAGAKVILLEKEPIPGG 163 >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472 Score = 26.8 bits (58), Expect = 4.8 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 +I G+G A L+ A + G V L Sbjct: 3 YII---GSGIAGLS----AGVALRRAGKKVTL 27 >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 Score = 26.3 bits (56), Expect = 6.4 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 9/41 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL--KGTQVDG 169 +VI G G + L AA+ A+E GA+V+L KG ++ Sbjct: 30 IVI---GGGPSGLM----AAIGAAEEGANVLLLDKGNKLGR 63 >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* Length = 588 Score = 26.3 bits (57), Expect = 6.6 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 VVI G G A + AAL+ S+ G L Sbjct: 11 VVI---GAGGAGMR----AALQISQSGQTCAL 35 >1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins with globular proteins, OB-fold, TIMP, cell adhesion; 1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A Length = 131 Score = 26.0 bits (57), Expect = 8.0 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 10/35 (28%) Query: 152 RASEIGADVILKGT--------QVDGVYSADPRVH 178 R E A+V+L GT V YS RV Sbjct: 9 REEE--ANVVLTGTVEEIMNVDPVHHTYSCKVRVW 41 >1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1 Length = 117 Score = 26.1 bits (57), Expect = 8.1 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 6/102 (5%) Query: 131 VVIFSG---GTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187 V++ +G G+ + F + A ALR E D+ L D V + Sbjct: 5 VIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMS-DAVTAGLRGQKPGEGYNIQQ 63 Query: 188 TYNQFIEKGLKVMDCASVVLAR--DCSIPIIVFSIHSPGGIW 227 + + V C + R I I + + Sbjct: 64 MLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELA 105 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 Score = 26.1 bits (57), Expect = 8.2 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 9/75 (12%) Query: 90 ALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAA 149 AL L N +IL + +P + + V + SG TD Sbjct: 41 ALAF-LEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISG-------ETDHEL 92 Query: 150 ALRASEIGA-DVILK 163 A E GA I K Sbjct: 93 IRAALEAGADGFIPK 107 >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 1zoy_A* 1zp0_A* Length = 621 Score = 25.9 bits (56), Expect = 8.6 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%) Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162 VV+ +GG G AA SE G + Sbjct: 22 VVVGAGGAG-------LRAAFGLSEAGFNTAC 46 >2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Length = 341 Score = 25.7 bits (56), Expect = 8.8 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%) Query: 122 AVSYLSQG-KVVIFSGGTGNA 141 ++ +Q K+V+ GGTG Sbjct: 3 KYTFKTQRPKIVVIGGGTGLP 23 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,035,678 Number of extensions: 90533 Number of successful extensions: 580 Number of sequences better than 10.0: 1 Number of HSP's gapped: 538 Number of HSP's successfully gapped: 68 Length of query: 242 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 152 Effective length of database: 3,511,270 Effective search space: 533713040 Effective search space used: 533713040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.5 bits)