Query gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs 132 out of 2145
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 13:57:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1efu_B Elongation factor TS; 100.0 0 0 621.3 19.3 265 2-294 1-265 (265)
2 >1xb2_B EF-TS, elongation fact 100.0 0 0 379.6 7.6 208 43-291 1-230 (246)
3 >1aip_C EF-TS, elongation fact 100.0 1.1E-43 0 311.2 10.6 133 4-148 2-135 (137)
4 >2cp9_A EF-TS, EF-TSMT, elonga 99.8 7.9E-22 2.3E-26 165.7 4.3 60 1-60 5-64 (64)
5 >1tfe_A Elongation factor TS; 99.8 8.3E-21 2.5E-25 158.8 3.4 83 57-151 1-84 (86)
6 >1tfe_A Elongation factor TS; 99.7 2.1E-17 6.2E-22 136.2 4.8 59 200-258 1-59 (59)
7 >1aip_C EF-TS, elongation fact 99.7 2.1E-17 6.2E-22 136.2 4.2 59 200-258 1-59 (59)
8 >1xb2_B EF-TS, elongation fact 99.7 8.9E-17 2.6E-21 132.0 5.7 45 2-46 1-45 (45)
9 >1tfe_A Elongation factor TS; 98.4 5.1E-07 1.5E-11 67.1 4.9 80 149-292 2-84 (86)
10 >1aip_C EF-TS, elongation fact 98.3 1.4E-06 4E-11 64.2 6.2 81 147-291 54-137 (137)
11 >1xb2_B EF-TS, elongation fact 98.0 6.9E-06 2.1E-10 59.5 4.9 106 147-291 14-122 (246)
12 >1efu_B Elongation factor TS; 96.5 0.004 1.2E-07 41.1 4.9 54 147-207 55-111 (265)
13 >2cwb_A Chimera of immunoglobu 96.4 0.0068 2E-07 39.6 5.2 38 6-43 67-104 (108)
14 >1vej_A Riken cDNA 4931431F19; 96.3 0.011 3.3E-07 38.2 5.9 41 4-44 28-68 (74)
15 >1wj7_A Hypothetical protein ( 96.2 0.01 3E-07 38.4 5.3 39 7-45 41-79 (104)
16 >1vg5_A RSGI RUH-014, rhomboid 96.2 0.011 3.2E-07 38.3 5.3 39 3-42 27-65 (73)
17 >2dna_A Unnamed protein produc 96.1 0.011 3.2E-07 38.2 5.3 39 5-44 19-58 (67)
18 >2dah_A Ubiquilin-3; UBA domai 96.0 0.017 5E-07 37.0 5.7 41 4-44 8-48 (54)
19 >1wiv_A UBP14, ubiquitin-speci 96.0 0.018 5.5E-07 36.7 5.8 41 3-44 27-67 (73)
20 >3ihp_A Ubiquitin carboxyl-ter 95.9 0.015 4.3E-07 37.4 5.2 42 3-45 12-53 (75)
21 >1wr1_B Ubiquitin-like protein 95.9 0.016 4.6E-07 37.2 5.1 39 5-44 17-56 (58)
22 >2dai_A Ubadc1, ubiquitin asso 95.8 0.029 8.7E-07 35.4 6.3 41 4-45 28-68 (83)
23 >2g3q_A Protein YBL047C; endoc 95.5 0.019 5.7E-07 36.6 4.4 39 4-43 3-41 (43)
24 >1veg_A NEDD8 ultimate buster- 95.5 0.034 1E-06 34.9 5.7 40 4-44 28-67 (83)
25 >1wgn_A UBAP1, ubiquitin assoc 95.3 0.021 6.1E-07 36.4 4.1 40 4-44 18-57 (63)
26 >2qsf_X RAD23, UV excision rep 95.3 0.019 5.6E-07 36.6 3.9 37 6-43 27-63 (67)
27 >1oqy_A HHR23A, UV excision re 95.3 0.011 3.2E-07 38.2 2.5 41 3-44 41-81 (99)
28 >1wji_A Tudor domain containin 95.2 0.041 1.2E-06 34.4 5.4 41 3-44 7-47 (63)
29 >1ify_A HHR23A, UV excision re 95.2 0.027 8.1E-07 35.6 4.3 39 4-43 7-45 (49)
30 >1oqy_A HHR23A, UV excision re 95.2 0.013 4E-07 37.6 2.7 41 3-44 15-55 (60)
31 >2dak_A Ubiquitin carboxyl-ter 94.7 0.071 2.1E-06 32.8 5.4 41 3-44 7-47 (63)
32 >1dv0_A DNA repair protein HHR 94.1 0.035 1E-06 34.9 2.7 37 6-43 5-41 (47)
33 >1tr8_A Conserved protein (MTH 93.7 0.13 4E-06 31.0 5.1 39 3-41 1-39 (40)
34 >2bwb_A Ubiquitin-like protein 93.7 0.15 4.3E-06 30.7 5.2 36 6-41 8-43 (46)
35 >2dag_A Ubiquitin carboxyl-ter 93.3 0.23 6.7E-06 29.5 5.7 41 3-44 7-48 (74)
36 >3ihp_A Ubiquitin carboxyl-ter 93.2 0.17 5.2E-06 30.2 5.0 40 4-44 15-55 (70)
37 >2cpw_A CBL-interacting protei 93.1 0.11 3.4E-06 31.5 3.9 40 4-44 18-58 (64)
38 >1vek_A UBP14, ubiquitin-speci 93.0 0.26 7.8E-06 29.0 5.7 40 4-44 28-68 (84)
39 >2jy5_A Ubiquilin-1; UBA, alte 92.6 0.26 7.8E-06 29.0 5.2 38 5-42 12-49 (52)
40 >3bq3_A Defective in cullin ne 91.2 0.37 1.1E-05 28.1 4.7 37 6-42 16-53 (65)
41 >1vdl_A Ubiquitin carboxyl-ter 90.0 0.66 1.9E-05 26.4 5.1 37 8-44 27-64 (80)
42 >1whc_A RSGI RUH-027, UBA/UBX 89.8 0.37 1.1E-05 28.0 3.7 40 4-44 8-48 (64)
43 >1v92_A NSFL1 cofactor P47; 3- 89.7 0.58 1.7E-05 26.7 4.6 41 1-41 1-41 (46)
44 >2crn_A Ubash3A protein; compa 88.6 0.5 1.5E-05 27.2 3.6 40 4-44 8-48 (64)
45 >1oai_A Nuclear RNA export fac 86.9 1.9 5.7E-05 23.3 5.8 38 5-42 7-44 (59)
46 >2cp8_A NEXT to BRCA1 gene 1 p 86.2 1.5 4.5E-05 24.0 4.9 38 6-43 10-47 (54)
47 >2dal_A Protein KIAA0794; FAS 84.4 2.1 6.1E-05 23.1 4.9 37 6-42 16-52 (62)
48 >2dam_A ETEA protein; KIAA0887 84.4 1.8 5.3E-05 23.5 4.6 35 6-40 19-54 (67)
49 >2jp7_A MRNA export factor MEX 83.8 2.6 7.7E-05 22.4 5.3 40 4-43 5-44 (57)
50 >2ooa_A E3 ubiquitin-protein l 83.3 1.8 5.2E-05 23.5 4.2 34 9-43 15-48 (52)
51 >2d9s_A CBL E3 ubiquitin prote 82.1 2.1 6.2E-05 23.1 4.2 35 9-44 13-47 (53)
52 >2juj_A E3 ubiquitin-protein l 80.1 2.2 6.5E-05 22.9 3.8 29 16-44 17-45 (56)
53 >2oo9_A E3 ubiquitin-protein l 76.7 3.5 0.0001 21.6 4.0 29 16-44 14-42 (46)
54 >1ctf_A Ribosomal protein L7/L 72.8 4.7 0.00014 20.7 3.8 27 5-31 19-45 (74)
55 >1rqu_A L8, 50S ribosomal prot 71.3 5.2 0.00015 20.4 3.7 26 6-31 26-51 (80)
56 >1dd3_A 50S ribosomal protein 64.8 6.9 0.0002 19.6 3.3 26 6-31 14-39 (71)
57 >2ftc_E Mitochondrial ribosoma 64.8 5.8 0.00017 20.1 2.9 30 5-34 16-46 (72)
58 >2zjq_5 50S ribosomal protein 56.9 7 0.00021 19.5 2.2 38 166-212 67-104 (122)
59 >1i07_A Epidermal growth facto 40.9 9.5 0.00028 18.7 0.8 13 77-89 4-16 (31)
60 >2dhy_A CUE domain-containing 39.2 26 0.00078 15.7 5.1 38 6-43 19-57 (67)
61 >1wgl_A TOLL-interacting prote 35.1 31 0.0009 15.3 5.1 40 4-43 8-48 (59)
62 >1ojl_A Transcriptional regula 33.7 32 0.00095 15.1 2.6 19 23-41 20-38 (51)
63 >1z96_A DNA-damage, UBA-domain 33.3 33 0.00097 15.1 3.9 26 16-41 14-39 (40)
64 >3huh_A Virulence protein STM3 29.1 14 0.0004 17.6 0.0 52 30-82 16-68 (75)
65 >3c1d_A Protein ORAA, regulato 28.7 15 0.00043 17.4 0.1 36 11-46 24-61 (61)
66 >2qqz_A Glyoxalase family prot 28.5 38 0.0011 14.7 2.2 46 32-82 11-56 (56)
67 >2kc2_A Talin-1, F1; FERM, adh 27.9 40 0.0012 14.5 2.7 21 256-276 26-46 (128)
68 >2hpi_A DNA polymerase III alp 23.3 48 0.0014 14.0 2.1 55 185-239 16-75 (83)
69 >3ced_A Methionine import ATP- 22.7 30 0.00089 15.3 0.8 11 126-136 20-30 (82)
70 >2q7x_A UPF0052 protein SP_156 22.4 48 0.0014 14.0 1.8 51 123-178 10-62 (75)
71 >2vla_A Bpuji, restriction end 20.9 54 0.0016 13.6 3.1 65 194-270 46-112 (153)
72 >3ey7_A Biphenyl-2,3-DIOL 1,2- 20.6 24 0.00071 16.0 -0.0 52 30-82 14-66 (67)
73 >2z5e_A Proteasome assembling 20.2 54 0.0016 13.7 1.7 51 164-214 38-110 (122)
No 1
>>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265)
Probab=100.00 E-value=0 Score=621.30 Aligned_cols=265 Identities=38% Similarity=0.566 Sum_probs=250.9
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEC
Q ss_conf 73558999999987199989999999962999899999999823889986510336422000044078853699998403
Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVET 81 (296)
Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincET 81 (296)
|+||+++||+||++||||||||||||++|+||+|+|++|||++|+++|+||++|.|+||+|+++.++ +.|+|+||||||
T Consensus 1 a~is~~~ik~LR~~Tgag~~~CKkAL~~~~gd~~~A~~~Lrk~G~~~a~k~~~r~~~eG~i~~~~~~-~~~~ivElncET 79 (265)
T 1efu_B 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQT 79 (265)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECCC
T ss_conf 9778999999998869859999999998489899999999997179888652870557659999749-879999983356
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 10102267999999888753103356577864004100001467789999854343102444310222210000013532
Q gi|254780778|r 82 DSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASP 161 (296)
Q Consensus 82 DFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~ 161 (296)
||||||+.|++|+.++++.++.++.+.. ...+.|++|.+.++++++||||.|||+..+ +++++++|.|+
T Consensus 80 DFVArn~~F~~l~~~ia~~~~~~~~~~~-------~~~~~tv~d~i~~~~~~igEni~l~R~~~~--~~~~v~~y~H~-- 148 (265)
T 1efu_B 80 DFVAKDAGFQAFADKVLDAAVAGKITDV-------EVLKAQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG-- 148 (265)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCEEEEEECC--
T ss_conf 5330767899999999999984488889-------998606899999999885446210126897--17725898669--
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 34603443444303543215789998856556676543320458783627777665666776312578678997774016
Q gi|254780778|r 162 SEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 (296)
Q Consensus 162 ~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gk 241 (296)
|+||++|++++++. ++++++||||+||+|.||++++||++++++|++++.+|+..+|||++|++||++||
T Consensus 149 ----g~ig~lv~~~~~~~------~~ak~iAmhiaa~~P~~l~~~~vp~~~i~~e~~i~~~q~~~~gKP~~i~ekIveGk 218 (265)
T 1efu_B 149 ----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 (265)
T ss_dssp ----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ----CCEEEEEECCCCHH------HHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf ----86068995367649------99998889998518743883559999999999999999975399888998884053
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 76664233302560002777439999987764207982899889876224124
Q gi|254780778|r 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294 (296)
Q Consensus 242 l~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~~ 294 (296)
|+|||+|+|||+||||+||++||++||++. +++|++|+||+|||..|
T Consensus 219 l~k~~~E~~LleQ~fi~D~~~tV~~~l~~~------~i~V~~F~R~evGEg~e 265 (265)
T 1efu_B 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 265 (265)
T ss_dssp HHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTSC
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCEE
T ss_conf 102112214543643169963799999976------99899999995478655
No 2
>>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:46-291)
Probab=100.00 E-value=0 Score=379.57 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCH--------------
Q ss_conf 823889986510336422000044078853699998403101022679999998887531033565--------------
Q gi|254780778|r 43 TKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSL-------------- 108 (296)
Q Consensus 43 kkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~-------------- 108 (296)
|+|+++|+||+||+|+||+|+++.++ ++|+|+||||||||||||+.|++|+.++++.++.++.+.
T Consensus 1 kkG~a~A~Kk~~R~a~EG~V~~~~~~-~~~~lvElncETDFVAkn~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (246)
T 1xb2_B 1 KEGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNS 79 (246)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 65788888874210244366650478-51389999822522226578999999999999860544377775421333324
Q ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCC------HHHHHHHHHHCCCCCH
Q ss_conf 7786400-41000014677899998543431024443102222-10000013532346------0344344430354321
Q gi|254780778|r 109 DNVLAMP-FDHSGITVGDGIKQQIAITGECIKLRRSALLCVSE-GVISSYLHASPSEG------LGSIGVLVALQSSAED 180 (296)
Q Consensus 109 ~~~~~~~-~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~-~~v~~Y~H~~~~~~------~GkigvlV~l~~~~~~ 180 (296)
..++..+ ...+|.||+|.++++++++||||.|||+.+++.++ +.+++|+|++...+ +|++++++.+..+..
T Consensus 80 ~~~~~~~~~~~~~~tv~e~i~~~~~~igEni~l~r~~~~~~~~~~~i~~y~H~~~~~~~~~~~~~g~~~a~~~~~~~~~- 158 (246)
T 1xb2_B 80 SELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL- 158 (246)
T ss_dssp HHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC-
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC-
T ss_conf 3388764212236638889988875213003310368986148843531002653444334411255322799642543-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 57899988565566765433204587836277776656667763125786789977740167666423330256000277
Q gi|254780778|r 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDP 260 (296)
Q Consensus 181 ~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~ 260 (296)
...+.+++++||||+++++|.+++..+ |+.+||+|+|||+||||+||
T Consensus 159 ~~~~~e~~k~ia~~~~~~~p~~~~~~~---------------------------------k~~k~~~E~~Ll~Q~fv~D~ 205 (246)
T 1xb2_B 159 KANLADLGRRLGQHVVGMAPLSVGSLD---------------------------------DEPGGEAETKMLSQPYLLDP 205 (246)
T ss_dssp GGGCHHHHHHHHHHHHHHCCSBCCCTT---------------------------------SCCCGGGCCBGGGSBCTTCT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHH---------------------------------CCCCCHHHHEECCCCCCCCC
T ss_conf 200677766778999875210112232---------------------------------45431155144589864279
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 7439999987764207982899889876224
Q gi|254780778|r 261 SKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296)
Q Consensus 261 ~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296)
++||++||++. +|+|++|+||+|||
T Consensus 206 ~~tV~~~lke~------~i~V~~FvR~evGE 230 (246)
T 1xb2_B 206 SITLGQYVQPH------GVSVVDFVRFECGE 230 (246)
T ss_dssp TSBHHHHHGGG------TCEEEEEEEEETTC
T ss_pred CEEHHHHHHHC------CCEEEEEEEEECCC
T ss_conf 70499999967------99899999996268
No 3
>>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196)
Probab=100.00 E-value=1.1e-43 Score=311.18 Aligned_cols=133 Identities=38% Similarity=0.494 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-CCCCCEEEEEEEEECC
Q ss_conf 558999999987199989999999962999899999999823889986510336422000044-0788536999984031
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIAR-DGYKKASIVEVNVETD 82 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~-~~~~~a~liEincETD 82 (296)
||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.|+++|.|+||+|+++. ++.+.++|+|+|||||
T Consensus 2 is~e~IK~LR~~Tgagi~dCKkAL~es~gDiekAi~~Lrk~G~~kA~Kk~~r~t~eG~v~~~v~~d~~~a~liElncETD 81 (137)
T 1aip_C 2 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETD 81 (137)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSH
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEEECCCC
T ss_conf 84799999999869889999999998499899999999987776777877799874100047854897689999825874
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 010226799999988875310335657786400410000146778999985434310244431022
Q gi|254780778|r 83 SLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCV 148 (296)
Q Consensus 83 FVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~ 148 (296)
|||||+.|++|+..+++.++.++ +.+.||+|++.+.|+++||||.||||++|..
T Consensus 82 FVAkn~~F~~l~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~e~~~i~r~~~~~~ 135 (137)
T 1aip_C 82 FVARNELFQNLAKDLAMHIAMMN------------DDKVKVKELIQQAIAKIGENIVVRRFCRFEL 135 (137)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHC------------CTTSBHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred HHHHCCCHHHHHHHHHHHHHCCC------------CCCCCHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 15411204557778888750268------------8976199999999986189808999999982
No 4
>>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} (A:)
Probab=99.84 E-value=7.9e-22 Score=165.66 Aligned_cols=60 Identities=28% Similarity=0.304 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 973558999999987199989999999962999899999999823889986510336422
Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 (296)
Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG 60 (296)
|++||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||++|.|+||
T Consensus 5 ~~~is~~~ik~LR~~Tga~~~dCKkAL~e~~gD~~~A~~~Lrk~G~~~A~Kk~~R~t~eG 64 (64)
T 2cp9_A 5 SSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp SSCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 432309999999999698899999999993899999999999988899998703443579
No 5
>>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:1-50,A:110-145)
Probab=99.81 E-value=8.3e-21 Score=158.84 Aligned_cols=83 Identities=31% Similarity=0.368 Sum_probs=72.9
Q ss_pred HHHHHHHHEE-CCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6422000044-078853699998403101022679999998887531033565778640041000014677899998543
Q gi|254780778|r 57 VSEGLIGIAR-DGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITG 135 (296)
Q Consensus 57 a~eG~v~~~~-~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iG 135 (296)
|+||+|+.+. ++.+.|+|+||||||||||||+.|++|++.+++.++..+ .+++|+.|.+.++++++|
T Consensus 1 AaEG~I~~~I~~d~~~aaivEiNcETDFVAkNe~F~~la~~ia~~~l~~~------------d~~~t~~~~~~~~~~~~g 68 (86)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMN------------DDKVKVKELIQQAIAKIG 68 (86)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHC------------EEEEEHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHCC
T ss_conf 99878999984899669999997356202112267889999987565303------------898409999999888608
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 4310244431022221
Q gi|254780778|r 136 ECIKLRRSALLCVSEG 151 (296)
Q Consensus 136 EnI~l~R~~~~~~~~~ 151 (296)
|||+++||.+|....+
T Consensus 69 eni~i~Rf~r~~~g~~ 84 (86)
T 1tfe_A 69 ENIVVRRFCRFELGAM 84 (86)
T ss_dssp SCCEEEEEEEEETTC-
T ss_pred CCEEEEEEEEEEECCE
T ss_conf 9808999999995546
No 6
>>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:51-109)
Probab=99.68 E-value=2.1e-17 Score=136.21 Aligned_cols=59 Identities=34% Similarity=0.599 Sum_probs=58.2
Q ss_pred HHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32045878362777766566677631257867899777401676664233302560002
Q gi|254780778|r 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVV 258 (296)
Q Consensus 200 P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~ 258 (296)
|.||+.++||++++++|++|+.+++..+|||++|++|||+|||+|||+|+|||+|+||+
T Consensus 1 P~~i~~~dip~~~i~~E~~i~~~~~~~~gKPe~i~ekIv~Grl~K~~~E~~Ll~Q~fiK 59 (59)
T 1tfe_A 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 59 (59)
T ss_dssp CSBSSGGGSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETT
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC
T ss_conf 33388576878899979999986765136809999999999999999876210486003
No 7
>>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:105-163)
Probab=99.68 E-value=2.1e-17 Score=136.21 Aligned_cols=59 Identities=34% Similarity=0.599 Sum_probs=58.2
Q ss_pred HHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32045878362777766566677631257867899777401676664233302560002
Q gi|254780778|r 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVV 258 (296)
Q Consensus 200 P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~ 258 (296)
|.||+.++||++++++|++|+.+++..+|||++|++|||+|||+|||+|+|||+|+||+
T Consensus 1 P~~i~~~dip~~~i~~E~~i~~~~~~~~gKPe~i~ekIv~Grl~K~~~E~~Ll~Q~fiK 59 (59)
T 1aip_C 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 59 (59)
T ss_dssp CSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCC
T ss_conf 54366022899999988889988887359828889988427532210011015688637
No 8
>>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:1-45)
Probab=99.66 E-value=8.9e-17 Score=132.01 Aligned_cols=45 Identities=33% Similarity=0.424 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 735589999999871999899999999629998999999998238
Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGA 46 (296)
Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~ 46 (296)
|+||+++||+||++|||||||||+||++++||+|+|++|||++|.
T Consensus 1 a~is~~~ik~LR~~Tgag~~dCKkAL~e~~gD~~kA~e~Lr~~Gk 45 (45)
T 1xb2_B 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQ 45 (45)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 935699999999885985999999999848989999999998646
No 9
>>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:1-50,A:110-145)
Probab=98.36 E-value=5.1e-07 Score=67.08 Aligned_cols=80 Identities=28% Similarity=0.535 Sum_probs=66.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 22100000135323460344344430354321---578999885655667654332045878362777766566677631
Q gi|254780778|r 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL 225 (296)
Q Consensus 149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~ 225 (296)
.+|.+++|++.+ ++.|++|++.+.++- .+.+..|+++++.|+++.
T Consensus 2 aEG~I~~~I~~d-----~~~aaivEiNcETDFVAkNe~F~~la~~ia~~~l~~--------------------------- 49 (86)
T 1tfe_A 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM--------------------------- 49 (86)
T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCEEEEEECCC-----CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHH---------------------------
T ss_conf 987899998489-----966999999735620211226788999998756530---------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 2578678997774016766642333025600027774399999877642079828998898762241
Q gi|254780778|r 226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE 292 (296)
Q Consensus 226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~ 292 (296)
.||++||.+++++.-.++|.+|+|.+|.||++||-
T Consensus 50 --------------------------------~d~~~t~~~~~~~~~~~~geni~i~Rf~r~~~g~~ 84 (86)
T 1tfe_A 50 --------------------------------NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAM 84 (86)
T ss_dssp --------------------------------CEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC-
T ss_pred --------------------------------CCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE
T ss_conf --------------------------------38984099999998886089808999999995546
No 10
>>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196)
Probab=98.31 E-value=1.4e-06 Score=64.22 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=65.4
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 2222100000135323460344344430354321---5789998856556676543320458783627777665666776
Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE 223 (296)
Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~ 223 (296)
.+.+|.++.|+|.+ ++.|+++++.+.++- ++.+..|+++|+.++++.
T Consensus 54 ~t~eG~v~~~v~~d-----~~~a~liElncETDFVAkn~~F~~l~~~i~~~~l~~------------------------- 103 (137)
T 1aip_C 54 EAREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------------------- 103 (137)
T ss_dssp CCCCCEEEEEECTT-----SSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHCEEEEEEECC-----CCEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHCC-------------------------
T ss_conf 98741000478548-----976899998258741541120455777888875026-------------------------
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 31257867899777401676664233302560002777439999987764207982899889876224
Q gi|254780778|r 224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296)
Q Consensus 224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296)
.||++||.+||++.-.++|.+++|.+|.||++|.
T Consensus 104 ----------------------------------~~~~~~~~~~~~~~~~~~~e~~~i~r~~~~~~~~ 137 (137)
T 1aip_C 104 ----------------------------------NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 137 (137)
T ss_dssp ----------------------------------CCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred ----------------------------------CCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
T ss_conf ----------------------------------8897619999999998618980899999998269
No 11
>>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:46-291)
Probab=98.03 E-value=6.9e-06 Score=59.52 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 222210000013532346034434443035432---15789998856556676543320458783627777665666776
Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE 223 (296)
Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~ 223 (296)
.+.+|.|+.|+. |+.|+||++++.++ .++.+..|++++++|+++++|..++.-.-.+.
T Consensus 14 ~a~EG~V~~~~~-------~~~~~lvElncETDFVAkn~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~------------ 74 (246)
T 1xb2_B 14 KTKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK------------ 74 (246)
T ss_dssp CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE------------
T ss_pred CHHHHHHHHCCC-------CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------
T ss_conf 024436665047-------8513899998225222265789999999999998605443777754213------------
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 31257867899777401676664233302560002777439999987764207982899889876224
Q gi|254780778|r 224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296)
Q Consensus 224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296)
.... .-.|++|++..++..||.+++.+....+|.+|.|.+|.+|+.+.
T Consensus 75 --~~~~------------------~~~~~~~~~~~~~~~tv~e~i~~~~~~igEni~l~r~~~~~~~~ 122 (246)
T 1xb2_B 75 --GFLN------------------SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPA 122 (246)
T ss_dssp --EEEC------------------HHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECCT
T ss_pred --HHHH------------------HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECC
T ss_conf --3332------------------43388764212236638889988875213003310368986148
No 12
>>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265)
Probab=96.54 E-value=0.004 Score=41.11 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=45.7
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 2222100000135323460344344430354321---578999885655667654332045878
Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQM 207 (296)
Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~ 207 (296)
.+.+|.++.|+| |+.|+||++++.++- ++.+..|++++|++++...|..+...+
T Consensus 55 ~~~eG~i~~~~~-------~~~~~ivElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~~~ 111 (265)
T 1efu_B 55 VAADGVIKTKID-------GNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK 111 (265)
T ss_dssp CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCCCEEEEEEC-------CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 055765999974-------987999998335653307678999999999999844888899986
No 13
>>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A (A:)
Probab=96.36 E-value=0.0068 Score=39.60 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999871999899999999629998999999998
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
...+..||+.==.--..|.+||.+++||++.|++||-.
T Consensus 67 ~~qL~~L~~MGF~d~~~n~~AL~~t~Gdv~~Ave~Ll~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 99999999838987999999999948999999999972
No 14
>>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} (A:)
Probab=96.28 E-value=0.011 Score=38.16 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
+....+.+|+++==.--.-|++||..++||++.|++||-..
T Consensus 28 ~~~~~l~~L~~MGF~d~~~~~~AL~~t~gdi~~Ai~~Ll~~ 68 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99999999999489978999999999289899999999846
No 15
>>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} (A:)
Probab=96.17 E-value=0.01 Score=38.42 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999987199989999999962999899999999823
Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296)
Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296)
..||+|++.||..--+|-=||-+|++|++.||.+|-+-+
T Consensus 41 ~kVkqi~e~T~~sedE~~~ALhDcd~D~~~AIn~LLEg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 999999999678899999987517753999999999547
No 16
>>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} (A:)
Probab=96.16 E-value=0.011 Score=38.28 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3558999999987199989999999962999899999999
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
.+....|.+|.++ |..--.|++||..|+||+|.|++||=
T Consensus 27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~Ll 65 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8689999999993-99999999999995899999999998
No 17
>>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=96.14 E-value=0.011 Score=38.22 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 589999999871999-8999999996299989999999982
Q gi|254780778|r 5 SAVAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 5 t~~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
....|-+|+++ |-+ --.|++||..|+||++.|++||-..
T Consensus 19 ~~~~l~~L~~M-GF~d~~~~~~AL~~~~gdve~A~~~L~~~ 58 (67)
T 2dna_A 19 FSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99999999993-89969999999999289999999999977
No 18
>>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=95.99 E-value=0.017 Score=36.98 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.....+.+||++-=.--..|.+||.+++||++.|++||-..
T Consensus 8 ~~~~qL~~L~~MGF~d~~~n~~AL~~t~Gdv~~Ai~~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 59999999999599968999999999499899999999974
No 19
>>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=95.96 E-value=0.018 Score=36.71 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.+....|.+|-++ |-+.-.|++||..++||++.|++||-..
T Consensus 27 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 67 (73)
T 1wiv_A 27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 9899999999946-9999999999999199999999999808
No 20
>>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:707-781)
Probab=95.95 E-value=0.015 Score=37.39 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3558999999987199989999999962999899999999823
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296)
.+....|..|.++ |-+.-.|++||..++||++.|++||-...
T Consensus 12 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~~ve~A~~wL~~~~ 53 (75)
T 3ihp_A 12 PPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHI 53 (75)
T ss_dssp -CCHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHCHHHHHCCC
T ss_conf 5547765104541-67999999999862676655504664172
No 21
>>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} (B:)
Probab=95.88 E-value=0.016 Score=37.22 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 58999999987199-98999999996299989999999982
Q gi|254780778|r 5 SAVAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 5 t~~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
....+-.|+++ |- ---.|++||..|+||++.|++||-..
T Consensus 17 ~~~~l~~L~~M-GF~d~~~~~~AL~~t~gdve~Av~~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 89999999994-99978999999999189999999999739
No 22
>>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=95.82 E-value=0.029 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 558999999987199989999999962999899999999823
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296)
++...|.+|-++ |-+.-.|++||..++||++.|++||-.++
T Consensus 28 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~wL~~~~ 68 (83)
T 2dai_A 28 VDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 799999999996-99999999999991999999999999878
No 23
>>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} (A:)
Probab=95.53 E-value=0.019 Score=36.61 Aligned_cols=39 Identities=33% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5589999999871999899999999629998999999998
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
+....|++|=++ |-+.-+|++||..|+||+|.|++||=.
T Consensus 3 ~~~~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 3 PKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 849999999976-999999999999929989999999871
No 24
>>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} (A:)
Probab=95.52 E-value=0.034 Score=34.93 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
+....|.+|=++ |-+.-.|++||..++||++.|++||-..
T Consensus 28 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~nnve~A~~~L~~~ 67 (83)
T 1veg_A 28 PSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 778889999983-4238889999999645099999999980
No 25
>>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} (A:)
Probab=95.35 E-value=0.021 Score=36.39 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
++.+.|.+|-++ |.+--.|++||..++||+|.|++||-..
T Consensus 18 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~L~~~ 57 (63)
T 1wgn_A 18 SERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 579999999986-9989999999999298999999999818
No 26
>>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B* (X:105-171)
Probab=95.33 E-value=0.019 Score=36.63 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999871999899999999629998999999998
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
...|.+|-.+ |.+-..|++||..|+||++.|++||=.
T Consensus 27 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 63 (67)
T 2qsf_X 27 DQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFS 63 (67)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999984-999999999999909999999999986
No 27
>>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:126-224)
Probab=95.28 E-value=0.011 Score=38.23 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.+....|.+|-++ |.+.-.|++||..|+||++.|++||-..
T Consensus 41 ~~~e~~i~~L~eM-GF~~~~a~~AL~~~~~nve~A~~~L~~~ 81 (99)
T 1oqy_A 41 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 81 (99)
T ss_dssp TTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred CHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCHHHHHHHHHCC
T ss_conf 1577889999850-6377999999998761889999998635
No 28
>>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=95.23 E-value=0.041 Score=34.38 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.++...|++|=++ |-+.-.|++||..++||++.|++||-..
T Consensus 7 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~n~~e~A~~wL~~~ 47 (63)
T 1wji_A 7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 5599999999996-9999999999999596999999999988
No 29
>>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} (A:)
Probab=95.19 E-value=0.027 Score=35.59 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5589999999871999899999999629998999999998
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
..-+.|++|-++ |-+--.|++||..++||+|.|++||-.
T Consensus 7 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~s 45 (49)
T 1ify_A 7 EYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 699999999980-027999999999871681789999982
No 30
>>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:309-368)
Probab=95.16 E-value=0.013 Score=37.65 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.+..+.|.+|-++ |.+.-.|++||..|+||+|.|++||=..
T Consensus 15 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lf~~ 55 (60)
T 1oqy_A 15 PQEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 55 (60)
T ss_dssp TTTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8999999999984-9998999999998299899999998635
No 31
>>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=94.72 E-value=0.071 Score=32.81 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
.+....|++|=++ |-+--.|++||..++||+|.|++||-..
T Consensus 7 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~n~~e~A~~wL~~~ 47 (63)
T 2dak_A 7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 9899999999996-9999999999999099999999999978
No 32
>>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:)
Probab=94.07 E-value=0.035 Score=34.87 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999871999899999999629998999999998
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
...|.+|=. -|-+-..|++||..|+||++.|++||=.
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999998-3998889999999818769999999985
No 33
>>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis} (A:63-102)
Probab=93.70 E-value=0.13 Score=30.97 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 355899999998719998999999996299989999999
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296)
+|+..+|+-.-++||.+--..++||.+++||+-.||--|
T Consensus 1 ei~~~DIeLV~~Qagvsr~kA~~AL~~~~gDiv~AIm~L 39 (40)
T 1tr8_A 1 EIPEDDIELVXNQTGASREDATRALQETGGDLAEAIXRL 39 (40)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 789899999987519999999999998479699999862
No 34
>>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} (A:)
Probab=93.65 E-value=0.15 Score=30.73 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 899999998719998999999996299989999999
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296)
...+.+||++-=.---.|-+||..++||++.||++|
T Consensus 8 ~~QL~qL~~MGF~d~~~Nl~AL~~t~Gdv~~Aie~L 43 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999999998599978999999999499899999998
No 35
>>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=93.26 E-value=0.23 Score=29.45 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 355899999998719998999999996299-989999999982
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
.+....|++|=++ |-+--.|++||..++| ++|.|++||-..
T Consensus 7 ~~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~~e~A~~Wl~~h 48 (74)
T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 9899999999995-99999999999997699999999999987
No 36
>>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:637-706)
Probab=93.20 E-value=0.17 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299-989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
++...|.+|-++ |-+--.|++||..++| ++|.|++||-..
T Consensus 15 ~d~~~i~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 55 (70)
T 3ihp_A 15 LDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 55 (70)
T ss_dssp --CHHHHHHHHH-TCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 441556567643-88878756666522676666653033320
No 37
>>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=93.07 E-value=0.11 Score=31.47 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299-989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
+....|.+|=++ |-+-..|++||..++| |+|.|++||-..
T Consensus 18 ~d~~~v~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wll~h 58 (64)
T 2cpw_A 18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 899999999996-99899999999997599999999999967
No 38
>>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=93.04 E-value=0.26 Score=29.02 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299-989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
++...|.+|=++ |-+--.|++||..++| ++|.|++||-..
T Consensus 28 ~d~~~l~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wll~h 68 (84)
T 1vek_A 28 ANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 999999999995-99999999999998699999999999987
No 39
>>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B (A:)
Probab=92.59 E-value=0.26 Score=29.04 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 58999999987199989999999962999899999999
Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
-...+.+||++-=.--..|-+||..++||+..|+++|.
T Consensus 12 y~~QL~qL~~MGF~d~~~nl~AL~~t~Gdv~~Ai~~Ll 49 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999994899789999999992898999999987
No 40
>>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* (A:1-65)
Probab=91.23 E-value=0.37 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH-HHH
Q ss_conf 8999999987199989999999962999899999-999
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAID-ILR 42 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~-~LR 42 (296)
-.+|.+....||+.--.|+.-|+.++||++.|+. |..
T Consensus 16 ~~li~qF~~iTg~~~~~A~~~L~~~~wdLe~Ai~~yf~ 53 (65)
T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD 53 (65)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999983899999999999869986999999984
No 41
>>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=89.96 E-value=0.66 Score=26.39 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999871999-8999999996299989999999982
Q gi|254780778|r 8 AVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 8 ~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
++.+||+.||-- ..---+||..++||+..|+-+|-.+
T Consensus 27 ~LnQLrEITGI~D~q~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 99999997377859999999980378899999998527
No 42
>>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} (A:)
Probab=89.78 E-value=0.37 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299-989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
++...|++|=++ |-+--.|++||..+++ ++|.|++||-..
T Consensus 8 ~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 48 (64)
T 1whc_A 8 AELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 699999999995-99999999999997699999999999987
No 43
>>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} (A:)
Probab=89.72 E-value=0.58 Score=26.74 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 97355899999998719998999999996299989999999
Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296)
|+.=.-.+|.+....||+.--.++.-|+.++||++.|+..-
T Consensus 1 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~w~le~Ai~~f 41 (46)
T 1v92_A 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 97529999999999989499999999999599699999999
No 44
>>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=88.63 E-value=0.5 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 55899999998719998999999996299-989999999982
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296)
++...|++|=++ |-+--.|+|||..+++ ++|.|++||-..
T Consensus 8 ~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 48 (64)
T 2crn_A 8 SSPSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSCSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 884888899983-67389999999985511099999999972
No 45
>>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} (A:)
Probab=86.87 E-value=1.9 Score=23.28 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 58999999987199989999999962999899999999
Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
--++|.++-..||--.-=|.+.|+++++|++.|+....
T Consensus 7 q~~mi~~~~~~Tgln~e~s~~cLe~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999788899999999985989999999999
No 46
>>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=86.18 E-value=1.5 Score=23.98 Aligned_cols=38 Identities=11% Similarity=-0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999871999899999999629998999999998
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
+....+|+++-=.--....+||.+++||+.+||+.|-.
T Consensus 10 ~~qL~qL~eMGF~D~~~N~~aL~~~~Gnv~~ai~~Ll~ 47 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999927452899999999826839999999998
No 47
>>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=84.36 E-value=2.1 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 8999999987199989999999962999899999999
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
-.+|.+.+..||+.-.-.|.-|+.|+|++|-|+..--
T Consensus 16 ~~Li~qFtaITgate~vakhmLEAcn~NLEMAvtm~l 52 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHEEEEE
T ss_conf 8899998872051789999999980777643301344
No 48
>>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=84.35 E-value=1.8 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8999999987199-9899999999629998999999
Q gi|254780778|r 6 AVAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDI 40 (296)
Q Consensus 6 ~~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~ 40 (296)
...+-+....||. -+-.|++-|+..|||++.|+.-
T Consensus 19 ~ekL~qFQ~iTGieD~~~~~~~Le~hnWdLe~Av~~ 54 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 998986655017420999999999836509999998
No 49
>>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A (A:)
Probab=83.81 E-value=2.6 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.011 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5589999999871999899999999629998999999998
Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
.--++|.++-..||--.-=|.+.|+++++|++.|+....+
T Consensus 5 ~q~~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 5 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999995999999999999869889999999999
No 50
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=83.28 E-value=1.8 Score=23.53 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999871999899999999629998999999998
Q gi|254780778|r 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 9 iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
|..|- .-|.+..|.++||.=+.+|+|-|-.+||+
T Consensus 15 I~~Lm-~~GYs~~dv~rAL~Ia~NniemA~~ILrE 48 (52)
T 2ooa_A 15 IAKLX-GEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999-85543999999999986219999999998
No 51
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=82.11 E-value=2.1 Score=23.05 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999998719998999999996299989999999982
Q gi|254780778|r 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 9 iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
|..|- .-|.+..|.++||.=+.+|+|-|-.+||+=
T Consensus 13 I~~Lm-~~GYs~~~v~rAL~Ia~NniemA~~ILrEF 47 (53)
T 2d9s_A 13 IERLM-SQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHH-HHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999-855339999999999862199999999997
No 52
>>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:)
Probab=80.12 E-value=2.2 Score=22.92 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=27.1
Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 19998999999996299989999999982
Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
-|.+..|.++||.=+.+|+|-|-.+||+=
T Consensus 17 ~GYs~~~V~rAL~Ia~NnvemA~~ILrEF 45 (56)
T 2juj_A 17 QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp TTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 66659999999999871199999999998
No 53
>>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:)
Probab=76.65 E-value=3.5 Score=21.55 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=27.0
Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 19998999999996299989999999982
Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296)
Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296)
-|.+..|..+||.=+.+|+|-|-++||+=
T Consensus 14 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF 42 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEXAKNILREF 42 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 67769999999999871099999999987
No 54
>>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} (A:)
Probab=72.78 E-value=4.7 Score=20.73 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 589999999871999899999999629
Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAK 31 (296)
Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296)
.++.||.+|+.||.|+++.|+..+.+.
T Consensus 19 Ki~vIK~vR~itgl~L~eAK~lve~~P 45 (74)
T 1ctf_A 19 KVAVIKAVRGATGLGLKEAKDLVESAP 45 (74)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 025889998865985899999887188
No 55
>>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} (A:41-120)
Probab=71.25 E-value=5.2 Score=20.44 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 89999999871999899999999629
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAK 31 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296)
++.||.+|..||.|+++.|+..+.+.
T Consensus 26 i~vIK~VR~itglgL~eAK~lve~~P 51 (80)
T 1rqu_A 26 VAVIKAVRGATGLGLKEAKDLVESAP 51 (80)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 17899999825998899999987087
No 56
>>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:58-128)
Probab=64.84 E-value=6.9 Score=19.61 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 89999999871999899999999629
Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAK 31 (296)
Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296)
++.||++|..||-|+++.|+..+.+.
T Consensus 14 i~vIK~Vr~itglgLkEAK~lVe~~P 39 (71)
T 1dd3_A 14 IQVIKVVREITGLGLKEAKDLVEKAG 39 (71)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 58999998855998899999997157
No 57
>>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:66-137)
Probab=64.82 E-value=5.8 Score=20.08 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=24.7
Q ss_pred CHHHHHHHHH-HHCCCHHHHHHHHHHCCCCH
Q ss_conf 5899999998-71999899999999629998
Q gi|254780778|r 5 SAVAVKELRG-KTGAGIMDCKNALLEAKGDS 34 (296)
Q Consensus 5 t~~~iK~LR~-~Tgag~~dCKkAL~e~~gD~ 34 (296)
.++.||.+|+ .||.|+++.|+..+.+..-+
T Consensus 16 Ki~vIK~vr~~~tglgL~eAK~lVe~~P~~i 46 (72)
T 2ftc_E 16 KVKLIKEIKNYVQGINLVQAKKLVESLPQEI 46 (72)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
T ss_conf 4579999998717998799999987088888
No 58
>>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} (5:)
Probab=56.86 E-value=7 Score=19.55 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH
Q ss_conf 34434443035432157899988565566765433204587836277
Q gi|254780778|r 166 GSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSI 212 (296)
Q Consensus 166 GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~ 212 (296)
.||.+|=.+..-. + --+.+ +|++ += .|..| .++|+.+-
T Consensus 67 ~Ki~vIK~vR~it-~-LgLkE-AK~l----VE-~p~~i-ke~vsKee 104 (122)
T 2zjq_5 67 SKINVIKEIRGIT-G-LGLKE-AKDM----SE-KGGVL-KEGVAKDE 104 (122)
T ss_pred CCCCHHHHHHHCC-C-CCHHH-HHHH----HH-CCHHH-HCCCCHHH
T ss_conf 6520134987617-9-98899-9987----60-76577-51899999
No 59
>>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} (A:1-31)
Probab=40.89 E-value=9.5 Score=18.67 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=10.5
Q ss_pred EEEECCHHHCCHH
Q ss_conf 9840310102267
Q gi|254780778|r 77 VNVETDSLAKNTD 89 (296)
Q Consensus 77 incETDFVAkn~~ 89 (296)
+.|--||||||..
T Consensus 4 ~~~~YdF~ARN~~ 16 (31)
T 1i07_A 4 AKSKYDFVARNSS 16 (31)
T ss_dssp EEESSCBCCSSTT
T ss_pred CEEEEEECCCCCC
T ss_conf 0432025047888
No 60
>>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=39.16 E-value=26 Score=15.71 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999871-999899999999629998999999998
Q gi|254780778|r 6 AVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 6 ~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
-+.++.|+++= +------+--|.+++|++|.|++-|-.
T Consensus 19 e~~~~~LkemFP~iD~~vI~~VL~a~~g~vd~aid~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999877768999999999929987999999984
No 61
>>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} (A:)
Probab=35.06 E-value=31 Score=15.29 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5589999999871-999899999999629998999999998
Q gi|254780778|r 4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296)
Q Consensus 4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296)
++-+.++.|+++= +.----.+--|..++|++|.||+-|-.
T Consensus 8 ~~~~~~~~Lk~mFP~iD~~vI~aVL~a~~G~~e~ai~~LL~ 48 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 76999999999878887999999999939977999999982
No 62
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304)
Probab=33.72 E-value=32 Score=15.15 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q ss_conf 9999996299989999999
Q gi|254780778|r 23 CKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 23 CKkAL~e~~gD~e~Ai~~L 41 (296)
-.+||..|+||+.+|-+.|
T Consensus 20 I~~aL~~~~Gn~~~aA~~L 38 (51)
T 1ojl_A 20 ILAALEKTGGNKTEAARQL 38 (51)
T ss_dssp HHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
T ss_conf 9999999299899999998
No 63
>>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} (A:)
Probab=33.26 E-value=33 Score=15.10 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.7
Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 19998999999996299989999999
Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296)
-|-.-.+.-+||..+|||++-|--+|
T Consensus 14 mgfdpleaaqaldaangdldvaasfl 39 (40)
T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 17887899988754047578889862
No 64
>>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygenase, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A (A:78-152)
Probab=29.15 E-value=14 Score=17.63 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHEECCCCCEEEEEEEEECC
Q ss_conf 29998999999998238899865103364220-000440788536999984031
Q gi|254780778|r 30 AKGDSELAIDILRTKGAMAASKREGRKVSEGL-IGIARDGYKKASIVEVNVETD 82 (296)
Q Consensus 30 ~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~-v~~~~~~~~~a~liEincETD 82 (296)
...|++.+.++|+.+|+........|....|- -+++.-+. -+.+||+.|-++
T Consensus 16 v~~d~d~~~~~L~~~Gv~i~~~p~~~~~~~~~~~siYf~DP-dG~~iEl~~~~~ 68 (75)
T 3huh_A 16 TSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDP-DGNLIEISQYVE 68 (75)
T ss_dssp ESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECT-TCCEEEEEEC--
T ss_pred EECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECC
T ss_conf 83107899999987186522387332268886899999999-999899988889
No 65
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61)
Probab=28.73 E-value=15 Score=17.41 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=16.2
Q ss_pred HHHHHHCCCHHHHH--HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99987199989999--9999629998999999998238
Q gi|254780778|r 11 ELRGKTGAGIMDCK--NALLEAKGDSELAIDILRTKGA 46 (296)
Q Consensus 11 ~LR~~Tgag~~dCK--kAL~e~~gD~e~Ai~~LRkkG~ 46 (296)
+||.+-.+.-+-.+ .+......+||.+|.|..++||
T Consensus 24 ELRrKL~a~~f~~~~~e~~~~~~eeIe~vIa~C~q~~w 61 (61)
T 3c1d_A 24 ELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGY 61 (61)
T ss_dssp HHHHHHHCC-----------CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998732113421224789999999999999399
No 66
>>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.92A {Bacillus anthracis str} (A:71-126)
Probab=28.51 E-value=38 Score=14.68 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECC
Q ss_conf 998999999998238899865103364220000440788536999984031
Q gi|254780778|r 32 GDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETD 82 (296)
Q Consensus 32 gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincETD 82 (296)
-|++++.+.|+++|.... ....-.|.-.++..+. -|.+||+..-+|
T Consensus 11 ddi~~~~~~L~~~Gv~~~----~~~~~~g~~~~~~~DP-dG~~iEl~~~~~ 56 (56)
T 2qqz_A 11 LKIDEFKQELIKQGIEVI----DDHARPDVIRFYVSDP-FGNRIEFXENKN 56 (56)
T ss_dssp TTHHHHHHHHHHTTCCCE----EECSSTTEEEEEEECT-TSCEEEEEEECC
T ss_pred CCHHHHHHHHHHCCCEEE----CCCCCCCEEEEEEECC-CCCEEEEEECCC
T ss_conf 978999999987696074----7777698589999989-999999998389
No 67
>>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} (A:)
Probab=27.88 E-value=40 Score=14.51 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=10.8
Q ss_pred CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 002777439999987764207
Q gi|254780778|r 256 FVVDPSKTVSDFLKESEKSIG 276 (296)
Q Consensus 256 fv~D~~~tV~~~l~e~~k~~g 276 (296)
++.|+++||++++...+..+|
T Consensus 26 ~~VDDSqtV~~l~~~IC~kiG 46 (128)
T 2kc2_A 26 IMVDDSKTVTDMLMTICARIG 46 (128)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHC
T ss_conf 996086279999999998758
No 68
>>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:729-811)
Probab=23.27 E-value=48 Score=13.95 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHCC---H--HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99885655667654332045---8--7836277776656667763125786789977740
Q gi|254780778|r 185 SAIGEKIAVHVMLASPSVIS---V--QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239 (296)
Q Consensus 185 ~~~ak~iAmhiaA~~P~~l~---~--~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~ 239 (296)
++-.-+|||+++++.|-=-+ + ..=+++.+++.++.+.+.+...|-|++..++|-+
T Consensus 16 QEQvm~ia~~~agfs~~ead~lRram~kK~~~~~~~~~~~F~~ga~~~G~~~~~a~~i~~ 75 (83)
T 2hpi_A 16 QEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFD 75 (83)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 989998899865898077899998756475888877654312322234567999999999
No 69
>>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} (A:17-98)
Probab=22.74 E-value=30 Score=15.33 Aligned_cols=11 Identities=0% Similarity=-0.275 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999985434
Q gi|254780778|r 126 GIKQQIAITGE 136 (296)
Q Consensus 126 ~i~~~ia~iGE 136 (296)
.+.+++...|-
T Consensus 20 iis~l~~~~~i 30 (82)
T 3ced_A 20 IVSSLSTAYDI 30 (82)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCC
T ss_conf 99999998599
No 70
>>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:47-121)
Probab=22.41 E-value=48 Score=14.00 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 46778999985434310244431022--221000001353234603443444303543
Q gi|254780778|r 123 VGDGIKQQIAITGECIKLRRSALLCV--SEGVISSYLHASPSEGLGSIGVLVALQSSA 178 (296)
Q Consensus 123 v~d~i~~~ia~iGEnI~l~R~~~~~~--~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~ 178 (296)
.+|.++-+++-..+-=.+++..-+.- .+|.+..-.-+| =-+.++..+.++.
T Consensus 10 PGDiRncL~ALa~~~~~~~~l~qyRF~~g~g~L~GH~lGN-----L~laaL~e~~G~~ 62 (75)
T 2q7x_A 10 PGDLRNVLVAXSDXPXFYEXVFQYRFSEDAGAFAGHPLGN-----LIIAGLSEXQGST 62 (75)
T ss_dssp CHHHHHHHHHTSSCHHHHHHHTTCBCCC----CCSCBTTH-----HHHHHHHHHHSSH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHEEECCCCCCCCCCCHHHH-----HHHHHHHHHCCCH
T ss_conf 5469999998535843443214256666888601263657-----9999898762999
No 71
>>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus} (A:101-253)
Probab=20.88 E-value=54 Score=13.64 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHH
Q ss_conf 6765433204587836277776656667763125786789977740167666423330256000277743--9999987
Q gi|254780778|r 194 HVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKT--VSDFLKE 270 (296)
Q Consensus 194 hiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~t--V~~~l~e 270 (296)
--|-.+|.+|+.+++.--+...=+ -+..--+|.++|++|.+.|-++. +-.+=-|++.| +.+++++
T Consensus 46 ~~A~~~~I~lTkdei~~~i~N~L~-----v~~~k~~~~Ev~~rI~e~R~s~i-------~~~~~~~g~~t~y~~q~~~d 112 (153)
T 2vla_A 46 LTADNNNIQLSKDDIAYYVLNSLQ-----VLQGKIKPIEVIEKIIEDRSNDI-------TKKVRHPGKETSYSMQHIRE 112 (153)
T ss_dssp HHHHHTTCCBCHHHHHHHTTTBHH-----HHTTCCCHHHHHHHHHHHHHTTC-------CCCCCCTTCCHHHHHHHHHH
T ss_pred HHHCCCCEEECHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHH
T ss_conf 860456157326777899862456-----74189867899999987132233-------67505997320489999999
No 72
>>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A* (A:67-133)
Probab=20.65 E-value=24 Score=15.97 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHEECCCCCEEEEEEEEECC
Q ss_conf 299989999999982388998651033642200-00440788536999984031
Q gi|254780778|r 30 AKGDSELAIDILRTKGAMAASKREGRKVSEGLI-GIARDGYKKASIVEVNVETD 82 (296)
Q Consensus 30 ~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v-~~~~~~~~~a~liEincETD 82 (296)
.+-|++.+.+.|+.+|.....--..|....|-. +++..+. -|-+||+.|--|
T Consensus 14 v~~~~d~~~~~L~~~Gv~i~~~p~~~~~~~g~~~siYf~DP-dG~~iEl~~~p~ 66 (67)
T 3ey7_A 14 TDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFYFRDP-DGNLIEVSTYSN 66 (67)
T ss_dssp CSSCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECT-TCCEEEEEESCC
T ss_pred ECCHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCC
T ss_conf 52148899999997597400287232278886899999999-999999897768
No 73
>>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens} (A:)
Probab=20.22 E-value=54 Score=13.66 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHHHHHHHH---HH--CCHHHCCHHHHH
Q ss_conf 603443444303543-----------------2157899988565566765433---20--458783627777
Q gi|254780778|r 164 GLGSIGVLVALQSSA-----------------EDKELLSAIGEKIAVHVMLASP---SV--ISVQMLDPSIVA 214 (296)
Q Consensus 164 ~~GkigvlV~l~~~~-----------------~~~~~~~~~ak~iAmhiaA~~P---~~--l~~~~v~~~~i~ 214 (296)
..||+|.++.+..+. .+......+|++|+-||...+| .. |.-.+.+.+.+.
T Consensus 38 Q~Gklgt~~~v~~~~~~~~~~~p~~~~~vLlG~de~l~~~~Arql~~~i~~~~~~r~lvl~LgLkd~s~e~~~ 110 (122)
T 2z5e_A 38 QFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQDEPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLK 110 (122)
T ss_dssp STTCCCEEEEEEECSSCCSSSSCCEEEEEEESCCCHHHHHHHHHHHHHHHHHTTSCEEEEEEECSSCCHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 0672038999366666788888864467976688589999999999997155899518999426558988999
Done!