Query gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] Match_columns 296 No_of_seqs 132 out of 2145 Neff 6.2 Searched_HMMs 33803 Date Wed Jun 1 13:57:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1efu_B Elongation factor TS; 100.0 0 0 621.3 19.3 265 2-294 1-265 (265) 2 >1xb2_B EF-TS, elongation fact 100.0 0 0 379.6 7.6 208 43-291 1-230 (246) 3 >1aip_C EF-TS, elongation fact 100.0 1.1E-43 0 311.2 10.6 133 4-148 2-135 (137) 4 >2cp9_A EF-TS, EF-TSMT, elonga 99.8 7.9E-22 2.3E-26 165.7 4.3 60 1-60 5-64 (64) 5 >1tfe_A Elongation factor TS; 99.8 8.3E-21 2.5E-25 158.8 3.4 83 57-151 1-84 (86) 6 >1tfe_A Elongation factor TS; 99.7 2.1E-17 6.2E-22 136.2 4.8 59 200-258 1-59 (59) 7 >1aip_C EF-TS, elongation fact 99.7 2.1E-17 6.2E-22 136.2 4.2 59 200-258 1-59 (59) 8 >1xb2_B EF-TS, elongation fact 99.7 8.9E-17 2.6E-21 132.0 5.7 45 2-46 1-45 (45) 9 >1tfe_A Elongation factor TS; 98.4 5.1E-07 1.5E-11 67.1 4.9 80 149-292 2-84 (86) 10 >1aip_C EF-TS, elongation fact 98.3 1.4E-06 4E-11 64.2 6.2 81 147-291 54-137 (137) 11 >1xb2_B EF-TS, elongation fact 98.0 6.9E-06 2.1E-10 59.5 4.9 106 147-291 14-122 (246) 12 >1efu_B Elongation factor TS; 96.5 0.004 1.2E-07 41.1 4.9 54 147-207 55-111 (265) 13 >2cwb_A Chimera of immunoglobu 96.4 0.0068 2E-07 39.6 5.2 38 6-43 67-104 (108) 14 >1vej_A Riken cDNA 4931431F19; 96.3 0.011 3.3E-07 38.2 5.9 41 4-44 28-68 (74) 15 >1wj7_A Hypothetical protein ( 96.2 0.01 3E-07 38.4 5.3 39 7-45 41-79 (104) 16 >1vg5_A RSGI RUH-014, rhomboid 96.2 0.011 3.2E-07 38.3 5.3 39 3-42 27-65 (73) 17 >2dna_A Unnamed protein produc 96.1 0.011 3.2E-07 38.2 5.3 39 5-44 19-58 (67) 18 >2dah_A Ubiquilin-3; UBA domai 96.0 0.017 5E-07 37.0 5.7 41 4-44 8-48 (54) 19 >1wiv_A UBP14, ubiquitin-speci 96.0 0.018 5.5E-07 36.7 5.8 41 3-44 27-67 (73) 20 >3ihp_A Ubiquitin carboxyl-ter 95.9 0.015 4.3E-07 37.4 5.2 42 3-45 12-53 (75) 21 >1wr1_B Ubiquitin-like protein 95.9 0.016 4.6E-07 37.2 5.1 39 5-44 17-56 (58) 22 >2dai_A Ubadc1, ubiquitin asso 95.8 0.029 8.7E-07 35.4 6.3 41 4-45 28-68 (83) 23 >2g3q_A Protein YBL047C; endoc 95.5 0.019 5.7E-07 36.6 4.4 39 4-43 3-41 (43) 24 >1veg_A NEDD8 ultimate buster- 95.5 0.034 1E-06 34.9 5.7 40 4-44 28-67 (83) 25 >1wgn_A UBAP1, ubiquitin assoc 95.3 0.021 6.1E-07 36.4 4.1 40 4-44 18-57 (63) 26 >2qsf_X RAD23, UV excision rep 95.3 0.019 5.6E-07 36.6 3.9 37 6-43 27-63 (67) 27 >1oqy_A HHR23A, UV excision re 95.3 0.011 3.2E-07 38.2 2.5 41 3-44 41-81 (99) 28 >1wji_A Tudor domain containin 95.2 0.041 1.2E-06 34.4 5.4 41 3-44 7-47 (63) 29 >1ify_A HHR23A, UV excision re 95.2 0.027 8.1E-07 35.6 4.3 39 4-43 7-45 (49) 30 >1oqy_A HHR23A, UV excision re 95.2 0.013 4E-07 37.6 2.7 41 3-44 15-55 (60) 31 >2dak_A Ubiquitin carboxyl-ter 94.7 0.071 2.1E-06 32.8 5.4 41 3-44 7-47 (63) 32 >1dv0_A DNA repair protein HHR 94.1 0.035 1E-06 34.9 2.7 37 6-43 5-41 (47) 33 >1tr8_A Conserved protein (MTH 93.7 0.13 4E-06 31.0 5.1 39 3-41 1-39 (40) 34 >2bwb_A Ubiquitin-like protein 93.7 0.15 4.3E-06 30.7 5.2 36 6-41 8-43 (46) 35 >2dag_A Ubiquitin carboxyl-ter 93.3 0.23 6.7E-06 29.5 5.7 41 3-44 7-48 (74) 36 >3ihp_A Ubiquitin carboxyl-ter 93.2 0.17 5.2E-06 30.2 5.0 40 4-44 15-55 (70) 37 >2cpw_A CBL-interacting protei 93.1 0.11 3.4E-06 31.5 3.9 40 4-44 18-58 (64) 38 >1vek_A UBP14, ubiquitin-speci 93.0 0.26 7.8E-06 29.0 5.7 40 4-44 28-68 (84) 39 >2jy5_A Ubiquilin-1; UBA, alte 92.6 0.26 7.8E-06 29.0 5.2 38 5-42 12-49 (52) 40 >3bq3_A Defective in cullin ne 91.2 0.37 1.1E-05 28.1 4.7 37 6-42 16-53 (65) 41 >1vdl_A Ubiquitin carboxyl-ter 90.0 0.66 1.9E-05 26.4 5.1 37 8-44 27-64 (80) 42 >1whc_A RSGI RUH-027, UBA/UBX 89.8 0.37 1.1E-05 28.0 3.7 40 4-44 8-48 (64) 43 >1v92_A NSFL1 cofactor P47; 3- 89.7 0.58 1.7E-05 26.7 4.6 41 1-41 1-41 (46) 44 >2crn_A Ubash3A protein; compa 88.6 0.5 1.5E-05 27.2 3.6 40 4-44 8-48 (64) 45 >1oai_A Nuclear RNA export fac 86.9 1.9 5.7E-05 23.3 5.8 38 5-42 7-44 (59) 46 >2cp8_A NEXT to BRCA1 gene 1 p 86.2 1.5 4.5E-05 24.0 4.9 38 6-43 10-47 (54) 47 >2dal_A Protein KIAA0794; FAS 84.4 2.1 6.1E-05 23.1 4.9 37 6-42 16-52 (62) 48 >2dam_A ETEA protein; KIAA0887 84.4 1.8 5.3E-05 23.5 4.6 35 6-40 19-54 (67) 49 >2jp7_A MRNA export factor MEX 83.8 2.6 7.7E-05 22.4 5.3 40 4-43 5-44 (57) 50 >2ooa_A E3 ubiquitin-protein l 83.3 1.8 5.2E-05 23.5 4.2 34 9-43 15-48 (52) 51 >2d9s_A CBL E3 ubiquitin prote 82.1 2.1 6.2E-05 23.1 4.2 35 9-44 13-47 (53) 52 >2juj_A E3 ubiquitin-protein l 80.1 2.2 6.5E-05 22.9 3.8 29 16-44 17-45 (56) 53 >2oo9_A E3 ubiquitin-protein l 76.7 3.5 0.0001 21.6 4.0 29 16-44 14-42 (46) 54 >1ctf_A Ribosomal protein L7/L 72.8 4.7 0.00014 20.7 3.8 27 5-31 19-45 (74) 55 >1rqu_A L8, 50S ribosomal prot 71.3 5.2 0.00015 20.4 3.7 26 6-31 26-51 (80) 56 >1dd3_A 50S ribosomal protein 64.8 6.9 0.0002 19.6 3.3 26 6-31 14-39 (71) 57 >2ftc_E Mitochondrial ribosoma 64.8 5.8 0.00017 20.1 2.9 30 5-34 16-46 (72) 58 >2zjq_5 50S ribosomal protein 56.9 7 0.00021 19.5 2.2 38 166-212 67-104 (122) 59 >1i07_A Epidermal growth facto 40.9 9.5 0.00028 18.7 0.8 13 77-89 4-16 (31) 60 >2dhy_A CUE domain-containing 39.2 26 0.00078 15.7 5.1 38 6-43 19-57 (67) 61 >1wgl_A TOLL-interacting prote 35.1 31 0.0009 15.3 5.1 40 4-43 8-48 (59) 62 >1ojl_A Transcriptional regula 33.7 32 0.00095 15.1 2.6 19 23-41 20-38 (51) 63 >1z96_A DNA-damage, UBA-domain 33.3 33 0.00097 15.1 3.9 26 16-41 14-39 (40) 64 >3huh_A Virulence protein STM3 29.1 14 0.0004 17.6 0.0 52 30-82 16-68 (75) 65 >3c1d_A Protein ORAA, regulato 28.7 15 0.00043 17.4 0.1 36 11-46 24-61 (61) 66 >2qqz_A Glyoxalase family prot 28.5 38 0.0011 14.7 2.2 46 32-82 11-56 (56) 67 >2kc2_A Talin-1, F1; FERM, adh 27.9 40 0.0012 14.5 2.7 21 256-276 26-46 (128) 68 >2hpi_A DNA polymerase III alp 23.3 48 0.0014 14.0 2.1 55 185-239 16-75 (83) 69 >3ced_A Methionine import ATP- 22.7 30 0.00089 15.3 0.8 11 126-136 20-30 (82) 70 >2q7x_A UPF0052 protein SP_156 22.4 48 0.0014 14.0 1.8 51 123-178 10-62 (75) 71 >2vla_A Bpuji, restriction end 20.9 54 0.0016 13.6 3.1 65 194-270 46-112 (153) 72 >3ey7_A Biphenyl-2,3-DIOL 1,2- 20.6 24 0.00071 16.0 -0.0 52 30-82 14-66 (67) 73 >2z5e_A Proteasome assembling 20.2 54 0.0016 13.7 1.7 51 164-214 38-110 (122) No 1 >>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265) Probab=100.00 E-value=0 Score=621.30 Aligned_cols=265 Identities=38% Similarity=0.566 Sum_probs=250.9 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEC Q ss_conf 73558999999987199989999999962999899999999823889986510336422000044078853699998403 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVET 81 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincET 81 (296) |+||+++||+||++||||||||||||++|+||+|+|++|||++|+++|+||++|.|+||+|+++.++ +.|+|+|||||| T Consensus 1 a~is~~~ik~LR~~Tgag~~~CKkAL~~~~gd~~~A~~~Lrk~G~~~a~k~~~r~~~eG~i~~~~~~-~~~~ivElncET 79 (265) T 1efu_B 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQT 79 (265) T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESC T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECCC T ss_conf 9778999999998869859999999998489899999999997179888652870557659999749-879999983356 Q ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 10102267999999888753103356577864004100001467789999854343102444310222210000013532 Q gi|254780778|r 82 DSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASP 161 (296) Q Consensus 82 DFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~ 161 (296) ||||||+.|++|+.++++.++.++.+.. ...+.|++|.+.++++++||||.|||+..+ +++++++|.|+ T Consensus 80 DFVArn~~F~~l~~~ia~~~~~~~~~~~-------~~~~~tv~d~i~~~~~~igEni~l~R~~~~--~~~~v~~y~H~-- 148 (265) T 1efu_B 80 DFVAKDAGFQAFADKVLDAAVAGKITDV-------EVLKAQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG-- 148 (265) T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET-- T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCCEEEEE--ECCEEEEEECC-- T ss_conf 5330767899999999999984488889-------998606899999999885446210126897--17725898669-- Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 34603443444303543215789998856556676543320458783627777665666776312578678997774016 Q gi|254780778|r 162 SEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 (296) Q Consensus 162 ~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gk 241 (296) |+||++|++++++. ++++++||||+||+|.||++++||++++++|++++.+|+..+|||++|++||++|| T Consensus 149 ----g~ig~lv~~~~~~~------~~ak~iAmhiaa~~P~~l~~~~vp~~~i~~e~~i~~~q~~~~gKP~~i~ekIveGk 218 (265) T 1efu_B 149 ----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 (265) T ss_dssp ----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred ----CCEEEEEECCCCHH------HHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC T ss_conf ----86068995367649------99998889998518743883559999999999999999975399888998884053 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC Q ss_conf 76664233302560002777439999987764207982899889876224124 Q gi|254780778|r 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294 (296) Q Consensus 242 l~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~~ 294 (296) |+|||+|+|||+||||+||++||++||++. +++|++|+||+|||..| T Consensus 219 l~k~~~E~~LleQ~fi~D~~~tV~~~l~~~------~i~V~~F~R~evGEg~e 265 (265) T 1efu_B 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 265 (265) T ss_dssp HHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTSC T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCEE T ss_conf 102112214543643169963799999976------99899999995478655 No 2 >>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:46-291) Probab=100.00 E-value=0 Score=379.57 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=179.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCH-------------- Q ss_conf 823889986510336422000044078853699998403101022679999998887531033565-------------- Q gi|254780778|r 43 TKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSL-------------- 108 (296) Q Consensus 43 kkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~-------------- 108 (296) |+|+++|+||+||+|+||+|+++.++ ++|+|+||||||||||||+.|++|+.++++.++.++.+. T Consensus 1 kkG~a~A~Kk~~R~a~EG~V~~~~~~-~~~~lvElncETDFVAkn~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (246) T 1xb2_B 1 KEGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNS 79 (246) T ss_dssp HHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECH T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 65788888874210244366650478-51389999822522226578999999999999860544377775421333324 Q ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCC------HHHHHHHHHHCCCCCH Q ss_conf 7786400-41000014677899998543431024443102222-10000013532346------0344344430354321 Q gi|254780778|r 109 DNVLAMP-FDHSGITVGDGIKQQIAITGECIKLRRSALLCVSE-GVISSYLHASPSEG------LGSIGVLVALQSSAED 180 (296) Q Consensus 109 ~~~~~~~-~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~-~~v~~Y~H~~~~~~------~GkigvlV~l~~~~~~ 180 (296) ..++..+ ...+|.||+|.++++++++||||.|||+.+++.++ +.+++|+|++...+ +|++++++.+..+.. T Consensus 80 ~~~~~~~~~~~~~~tv~e~i~~~~~~igEni~l~r~~~~~~~~~~~i~~y~H~~~~~~~~~~~~~g~~~a~~~~~~~~~- 158 (246) T 1xb2_B 80 SELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL- 158 (246) T ss_dssp HHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC- T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC- T ss_conf 3388764212236638889988875213003310368986148843531002653444334411255322799642543- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 57899988565566765433204587836277776656667763125786789977740167666423330256000277 Q gi|254780778|r 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDP 260 (296) Q Consensus 181 ~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~ 260 (296) ...+.+++++||||+++++|.+++..+ |+.+||+|+|||+||||+|| T Consensus 159 ~~~~~e~~k~ia~~~~~~~p~~~~~~~---------------------------------k~~k~~~E~~Ll~Q~fv~D~ 205 (246) T 1xb2_B 159 KANLADLGRRLGQHVVGMAPLSVGSLD---------------------------------DEPGGEAETKMLSQPYLLDP 205 (246) T ss_dssp GGGCHHHHHHHHHHHHHHCCSBCCCTT---------------------------------SCCCGGGCCBGGGSBCTTCT T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHH---------------------------------CCCCCHHHHEECCCCCCCCC T ss_conf 200677766778999875210112232---------------------------------45431155144589864279 Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 7439999987764207982899889876224 Q gi|254780778|r 261 SKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 261 ~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) ++||++||++. +|+|++|+||+||| T Consensus 206 ~~tV~~~lke~------~i~V~~FvR~evGE 230 (246) T 1xb2_B 206 SITLGQYVQPH------GVSVVDFVRFECGE 230 (246) T ss_dssp TSBHHHHHGGG------TCEEEEEEEEETTC T ss_pred CEEHHHHHHHC------CCEEEEEEEEECCC T ss_conf 70499999967------99899999996268 No 3 >>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196) Probab=100.00 E-value=1.1e-43 Score=311.18 Aligned_cols=133 Identities=38% Similarity=0.494 Sum_probs=124.2 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-CCCCCEEEEEEEEECC Q ss_conf 558999999987199989999999962999899999999823889986510336422000044-0788536999984031 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIAR-DGYKKASIVEVNVETD 82 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~-~~~~~a~liEincETD 82 (296) ||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.|+++|.|+||+|+++. ++.+.++|+|+||||| T Consensus 2 is~e~IK~LR~~Tgagi~dCKkAL~es~gDiekAi~~Lrk~G~~kA~Kk~~r~t~eG~v~~~v~~d~~~a~liElncETD 81 (137) T 1aip_C 2 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETD 81 (137) T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSH T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEEECCCC T ss_conf 84799999999869889999999998499899999999987776777877799874100047854897689999825874 Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 010226799999988875310335657786400410000146778999985434310244431022 Q gi|254780778|r 83 SLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCV 148 (296) Q Consensus 83 FVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~ 148 (296) |||||+.|++|+..+++.++.++ +.+.||+|++.+.|+++||||.||||++|.. T Consensus 82 FVAkn~~F~~l~~~i~~~~l~~~------------~~~~~~~~~~~~~~~~~~e~~~i~r~~~~~~ 135 (137) T 1aip_C 82 FVARNELFQNLAKDLAMHIAMMN------------DDKVKVKELIQQAIAKIGENIVVRRFCRFEL 135 (137) T ss_dssp HHHTSHHHHHHHHHHHHHHHHHC------------CTTSBHHHHHHHHHHHHCSCCEEEEEEEEET T ss_pred HHHHCCCHHHHHHHHHHHHHCCC------------CCCCCHHHHHHHHHHHCCCCEEEEEEEEEEE T ss_conf 15411204557778888750268------------8976199999999986189808999999982 No 4 >>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} (A:) Probab=99.84 E-value=7.9e-22 Score=165.66 Aligned_cols=60 Identities=28% Similarity=0.304 Sum_probs=59.1 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 973558999999987199989999999962999899999999823889986510336422 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG 60 (296) |++||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||++|.|+|| T Consensus 5 ~~~is~~~ik~LR~~Tga~~~dCKkAL~e~~gD~~~A~~~Lrk~G~~~A~Kk~~R~t~eG 64 (64) T 2cp9_A 5 SSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64) T ss_dssp SSCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 432309999999999698899999999993899999999999988899998703443579 No 5 >>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:1-50,A:110-145) Probab=99.81 E-value=8.3e-21 Score=158.84 Aligned_cols=83 Identities=31% Similarity=0.368 Sum_probs=72.9 Q ss_pred HHHHHHHHEE-CCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6422000044-078853699998403101022679999998887531033565778640041000014677899998543 Q gi|254780778|r 57 VSEGLIGIAR-DGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITG 135 (296) Q Consensus 57 a~eG~v~~~~-~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iG 135 (296) |+||+|+.+. ++.+.|+|+||||||||||||+.|++|++.+++.++..+ .+++|+.|.+.++++++| T Consensus 1 AaEG~I~~~I~~d~~~aaivEiNcETDFVAkNe~F~~la~~ia~~~l~~~------------d~~~t~~~~~~~~~~~~g 68 (86) T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMN------------DDKVKVKELIQQAIAKIG 68 (86) T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHC------------EEEEEHHHHHHHHHHHHC T ss_pred CCCCEEEEEECCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHCC T ss_conf 99878999984899669999997356202112267889999987565303------------898409999999888608 Q ss_pred HHHHHHHHHHCCCCCC Q ss_conf 4310244431022221 Q gi|254780778|r 136 ECIKLRRSALLCVSEG 151 (296) Q Consensus 136 EnI~l~R~~~~~~~~~ 151 (296) |||+++||.+|....+ T Consensus 69 eni~i~Rf~r~~~g~~ 84 (86) T 1tfe_A 69 ENIVVRRFCRFELGAM 84 (86) T ss_dssp SCCEEEEEEEEETTC- T ss_pred CCEEEEEEEEEEECCE T ss_conf 9808999999995546 No 6 >>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:51-109) Probab=99.68 E-value=2.1e-17 Score=136.21 Aligned_cols=59 Identities=34% Similarity=0.599 Sum_probs=58.2 Q ss_pred HHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 32045878362777766566677631257867899777401676664233302560002 Q gi|254780778|r 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVV 258 (296) Q Consensus 200 P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~ 258 (296) |.||+.++||++++++|++|+.+++..+|||++|++|||+|||+|||+|+|||+|+||+ T Consensus 1 P~~i~~~dip~~~i~~E~~i~~~~~~~~gKPe~i~ekIv~Grl~K~~~E~~Ll~Q~fiK 59 (59) T 1tfe_A 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 59 (59) T ss_dssp CSBSSGGGSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETT T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC T ss_conf 33388576878899979999986765136809999999999999999876210486003 No 7 >>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:105-163) Probab=99.68 E-value=2.1e-17 Score=136.21 Aligned_cols=59 Identities=34% Similarity=0.599 Sum_probs=58.2 Q ss_pred HHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 32045878362777766566677631257867899777401676664233302560002 Q gi|254780778|r 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVV 258 (296) Q Consensus 200 P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~ 258 (296) |.||+.++||++++++|++|+.+++..+|||++|++|||+|||+|||+|+|||+|+||+ T Consensus 1 P~~i~~~dip~~~i~~E~~i~~~~~~~~gKPe~i~ekIv~Grl~K~~~E~~Ll~Q~fiK 59 (59) T 1aip_C 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 59 (59) T ss_dssp CSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCC T ss_conf 54366022899999988889988887359828889988427532210011015688637 No 8 >>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:1-45) Probab=99.66 E-value=8.9e-17 Score=132.01 Aligned_cols=45 Identities=33% Similarity=0.424 Sum_probs=43.5 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 735589999999871999899999999629998999999998238 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGA 46 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~ 46 (296) |+||+++||+||++|||||||||+||++++||+|+|++|||++|. T Consensus 1 a~is~~~ik~LR~~Tgag~~dCKkAL~e~~gD~~kA~e~Lr~~Gk 45 (45) T 1xb2_B 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQ 45 (45) T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 935699999999885985999999999848989999999998646 No 9 >>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:1-50,A:110-145) Probab=98.36 E-value=5.1e-07 Score=67.08 Aligned_cols=80 Identities=28% Similarity=0.535 Sum_probs=66.6 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH Q ss_conf 22100000135323460344344430354321---578999885655667654332045878362777766566677631 Q gi|254780778|r 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL 225 (296) Q Consensus 149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~ 225 (296) .+|.+++|++.+ ++.|++|++.+.++- .+.+..|+++++.|+++. T Consensus 2 aEG~I~~~I~~d-----~~~aaivEiNcETDFVAkNe~F~~la~~ia~~~l~~--------------------------- 49 (86) T 1tfe_A 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM--------------------------- 49 (86) T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHH--------------------------- T ss_pred CCCEEEEEECCC-----CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHH--------------------------- T ss_conf 987899998489-----966999999735620211226788999998756530--------------------------- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC Q ss_conf 2578678997774016766642333025600027774399999877642079828998898762241 Q gi|254780778|r 226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE 292 (296) Q Consensus 226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~ 292 (296) .||++||.+++++.-.++|.+|+|.+|.||++||- T Consensus 50 --------------------------------~d~~~t~~~~~~~~~~~~geni~i~Rf~r~~~g~~ 84 (86) T 1tfe_A 50 --------------------------------NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAM 84 (86) T ss_dssp --------------------------------CEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC- T ss_pred --------------------------------CCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE T ss_conf --------------------------------38984099999998886089808999999995546 No 10 >>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196) Probab=98.31 E-value=1.4e-06 Score=64.22 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=65.4 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH Q ss_conf 2222100000135323460344344430354321---5789998856556676543320458783627777665666776 Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE 223 (296) Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~ 223 (296) .+.+|.++.|+|.+ ++.|+++++.+.++- ++.+..|+++|+.++++. T Consensus 54 ~t~eG~v~~~v~~d-----~~~a~liElncETDFVAkn~~F~~l~~~i~~~~l~~------------------------- 103 (137) T 1aip_C 54 EAREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------------------- 103 (137) T ss_dssp CCCCCEEEEEECTT-----SSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHH------------------------- T ss_pred HHHHCEEEEEEECC-----CCEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHCC------------------------- T ss_conf 98741000478548-----976899998258741541120455777888875026------------------------- Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 31257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) .||++||.+||++.-.++|.+++|.+|.||++|. T Consensus 104 ----------------------------------~~~~~~~~~~~~~~~~~~~e~~~i~r~~~~~~~~ 137 (137) T 1aip_C 104 ----------------------------------NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 137 (137) T ss_dssp ----------------------------------CCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC T ss_pred ----------------------------------CCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC T ss_conf ----------------------------------8897619999999998618980899999998269 No 11 >>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:46-291) Probab=98.03 E-value=6.9e-06 Score=59.52 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=85.8 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH Q ss_conf 222210000013532346034434443035432---15789998856556676543320458783627777665666776 Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE 223 (296) Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~ 223 (296) .+.+|.|+.|+. |+.|+||++++.++ .++.+..|++++++|+++++|..++.-.-.+. T Consensus 14 ~a~EG~V~~~~~-------~~~~~lvElncETDFVAkn~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~------------ 74 (246) T 1xb2_B 14 KTKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK------------ 74 (246) T ss_dssp CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE------------ T ss_pred CHHHHHHHHCCC-------CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------ T ss_conf 024436665047-------8513899998225222265789999999999998605443777754213------------ Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 31257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) .... .-.|++|++..++..||.+++.+....+|.+|.|.+|.+|+.+. T Consensus 75 --~~~~------------------~~~~~~~~~~~~~~~tv~e~i~~~~~~igEni~l~r~~~~~~~~ 122 (246) T 1xb2_B 75 --GFLN------------------SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPA 122 (246) T ss_dssp --EEEC------------------HHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECCT T ss_pred --HHHH------------------HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECC T ss_conf --3332------------------43388764212236638889988875213003310368986148 No 12 >>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265) Probab=96.54 E-value=0.004 Score=41.11 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=45.7 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 2222100000135323460344344430354321---578999885655667654332045878 Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQM 207 (296) Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~ 207 (296) .+.+|.++.|+| |+.|+||++++.++- ++.+..|++++|++++...|..+...+ T Consensus 55 ~~~eG~i~~~~~-------~~~~~ivElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~~~ 111 (265) T 1efu_B 55 VAADGVIKTKID-------GNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK 111 (265) T ss_dssp CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHHH T ss_pred CCCCCEEEEEEC-------CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 055765999974-------987999998335653307678999999999999844888899986 No 13 >>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A (A:) Probab=96.36 E-value=0.0068 Score=39.60 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ...+..||+.==.--..|.+||.+++||++.|++||-. T Consensus 67 ~~qL~~L~~MGF~d~~~n~~AL~~t~Gdv~~Ave~Ll~ 104 (108) T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108) T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHC T ss_conf 99999999838987999999999948999999999972 No 14 >>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} (A:) Probab=96.28 E-value=0.011 Score=38.16 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=32.6 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 55899999998719998999999996299989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) +....+.+|+++==.--.-|++||..++||++.|++||-.. T Consensus 28 ~~~~~l~~L~~MGF~d~~~~~~AL~~t~gdi~~Ai~~Ll~~ 68 (74) T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74) T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999999489978999999999289899999999846 No 15 >>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} (A:) Probab=96.17 E-value=0.01 Score=38.42 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=36.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 999999987199989999999962999899999999823 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ..||+|++.||..--+|-=||-+|++|++.||.+|-+-+ T Consensus 41 ~kVkqi~e~T~~sedE~~~ALhDcd~D~~~AIn~LLEg~ 79 (104) T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCC T ss_conf 999999999678899999987517753999999999547 No 16 >>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} (A:) Probab=96.16 E-value=0.011 Score=38.28 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=33.6 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 3558999999987199989999999962999899999999 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) .+....|.+|.++ |..--.|++||..|+||+|.|++||= T Consensus 27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~Ll 65 (73) T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM 65 (73) T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 8689999999993-99999999999995899999999998 No 17 >>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=96.14 E-value=0.011 Score=38.22 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=29.0 Q ss_pred CHHHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 589999999871999-8999999996299989999999982 Q gi|254780778|r 5 SAVAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 5 t~~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ....|-+|+++ |-+ --.|++||..|+||++.|++||-.. T Consensus 19 ~~~~l~~L~~M-GF~d~~~~~~AL~~~~gdve~A~~~L~~~ 58 (67) T 2dna_A 19 FSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67) T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHC T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999993-89969999999999289999999999977 No 18 >>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=95.99 E-value=0.017 Score=36.98 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=32.0 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 55899999998719998999999996299989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .....+.+||++-=.--..|.+||.+++||++.|++||-.. T Consensus 8 ~~~~qL~~L~~MGF~d~~~n~~AL~~t~Gdv~~Ai~~L~~~ 48 (54) T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54) T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 59999999999599968999999999499899999999974 No 19 >>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} (A:) Probab=95.96 E-value=0.018 Score=36.71 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=33.7 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|.+|-++ |-+.-.|++||..++||++.|++||-.. T Consensus 27 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 67 (73) T 1wiv_A 27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73) T ss_dssp SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9899999999946-9999999999999199999999999808 No 20 >>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:707-781) Probab=95.95 E-value=0.015 Score=37.39 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=36.2 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 3558999999987199989999999962999899999999823 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) .+....|..|.++ |-+.-.|++||..++||++.|++||-... T Consensus 12 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~~ve~A~~wL~~~~ 53 (75) T 3ihp_A 12 PPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHI 53 (75) T ss_dssp -CCHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHCHHHHHCCC T ss_conf 5547765104541-67999999999862676655504664172 No 21 >>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} (B:) Probab=95.88 E-value=0.016 Score=37.22 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=28.9 Q ss_pred CHHHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 58999999987199-98999999996299989999999982 Q gi|254780778|r 5 SAVAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 5 t~~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ....+-.|+++ |- ---.|++||..|+||++.|++||-.. T Consensus 17 ~~~~l~~L~~M-GF~d~~~~~~AL~~t~gdve~Av~~L~~~ 56 (58) T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58) T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 89999999994-99978999999999189999999999739 No 22 >>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=95.82 E-value=0.029 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=34.9 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 558999999987199989999999962999899999999823 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ++...|.+|-++ |-+.-.|++||..++||++.|++||-.++ T Consensus 28 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~wL~~~~ 68 (83) T 2dai_A 28 VDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83) T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGG T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 799999999996-99999999999991999999999999878 No 23 >>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} (A:) Probab=95.53 E-value=0.019 Score=36.61 Aligned_cols=39 Identities=33% Similarity=0.350 Sum_probs=31.6 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) +....|++|=++ |-+.-+|++||..|+||+|.|++||=. T Consensus 3 ~~~~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43) T 2g3q_A 3 PKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43) T ss_dssp HHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 849999999976-999999999999929989999999871 No 24 >>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} (A:) Probab=95.52 E-value=0.034 Score=34.93 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=33.4 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 55899999998719998999999996299989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) +....|.+|=++ |-+.-.|++||..++||++.|++||-.. T Consensus 28 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~nnve~A~~~L~~~ 67 (83) T 1veg_A 28 PSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83) T ss_dssp CCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH T ss_pred CCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 778889999983-4238889999999645099999999980 No 25 >>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} (A:) Probab=95.35 E-value=0.021 Score=36.39 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=33.1 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 55899999998719998999999996299989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ++.+.|.+|-++ |.+--.|++||..++||+|.|++||-.. T Consensus 18 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~L~~~ 57 (63) T 1wgn_A 18 SERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63) T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 579999999986-9989999999999298999999999818 No 26 >>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B* (X:105-171) Probab=95.33 E-value=0.019 Score=36.63 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ...|.+|-.+ |.+-..|++||..|+||++.|++||=. T Consensus 27 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 63 (67) T 2qsf_X 27 DQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFS 63 (67) T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTT T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999984-999999999999909999999999986 No 27 >>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:126-224) Probab=95.28 E-value=0.011 Score=38.23 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=34.4 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|.+|-++ |.+.-.|++||..|+||++.|++||-.. T Consensus 41 ~~~e~~i~~L~eM-GF~~~~a~~AL~~~~~nve~A~~~L~~~ 81 (99) T 1oqy_A 41 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 81 (99) T ss_dssp TTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS T ss_pred CHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCHHHHHHHHHCC T ss_conf 1577889999850-6377999999998761889999998635 No 28 >>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:) Probab=95.23 E-value=0.041 Score=34.38 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .++...|++|=++ |-+.-.|++||..++||++.|++||-.. T Consensus 7 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~n~~e~A~~wL~~~ 47 (63) T 1wji_A 7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63) T ss_dssp SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 5599999999996-9999999999999596999999999988 No 29 >>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} (A:) Probab=95.19 E-value=0.027 Score=35.59 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.0 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ..-+.|++|-++ |-+--.|++||..++||+|.|++||-. T Consensus 7 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~s 45 (49) T 1ify_A 7 EYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49) T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHC T ss_conf 699999999980-027999999999871681789999982 No 30 >>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} (A:309-368) Probab=95.16 E-value=0.013 Score=37.65 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=34.3 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+..+.|.+|-++ |.+.-.|++||..|+||+|.|++||=.. T Consensus 15 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lf~~ 55 (60) T 1oqy_A 15 PQEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 55 (60) T ss_dssp TTTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 8999999999984-9998999999998299899999998635 No 31 >>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=94.72 E-value=0.071 Score=32.81 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|++|=++ |-+--.|++||..++||+|.|++||-.. T Consensus 7 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~n~~e~A~~wL~~~ 47 (63) T 2dak_A 7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63) T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9899999999996-9999999999999099999999999978 No 32 >>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:) Probab=94.07 E-value=0.035 Score=34.87 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ...|.+|=. -|-+-..|++||..|+||++.|++||=. T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~Lf~ 41 (47) T 1dv0_A 5 KEAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47) T ss_dssp HHHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999998-3998889999999818769999999985 No 33 >>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis} (A:63-102) Probab=93.70 E-value=0.13 Score=30.97 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=35.5 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 355899999998719998999999996299989999999 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) +|+..+|+-.-++||.+--..++||.+++||+-.||--| T Consensus 1 ei~~~DIeLV~~Qagvsr~kA~~AL~~~~gDiv~AIm~L 39 (40) T 1tr8_A 1 EIPEDDIELVXNQTGASREDATRALQETGGDLAEAIXRL 39 (40) T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 789899999987519999999999998479699999862 No 34 >>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} (A:) Probab=93.65 E-value=0.15 Score=30.73 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 899999998719998999999996299989999999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) ...+.+||++-=.---.|-+||..++||++.||++| T Consensus 8 ~~QL~qL~~MGF~d~~~Nl~AL~~t~Gdv~~Aie~L 43 (46) T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46) T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 999999998599978999999999499899999998 No 35 >>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=93.26 E-value=0.23 Score=29.45 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.2 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 355899999998719998999999996299-989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) .+....|++|=++ |-+--.|++||..++| ++|.|++||-.. T Consensus 7 ~~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~~e~A~~Wl~~h 48 (74) T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74) T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9899999999995-99999999999997699999999999987 No 36 >>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:637-706) Probab=93.20 E-value=0.17 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=32.5 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 55899999998719998999999996299-989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) ++...|.+|-++ |-+--.|++||..++| ++|.|++||-.. T Consensus 15 ~d~~~i~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 55 (70) T 3ihp_A 15 LDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 55 (70) T ss_dssp --CHHHHHHHHH-TCCHHHHHHHHHHTTSCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 441556567643-88878756666522676666653033320 No 37 >>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=93.07 E-value=0.11 Score=31.47 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.6 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 55899999998719998999999996299-989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) +....|.+|=++ |-+-..|++||..++| |+|.|++||-.. T Consensus 18 ~d~~~v~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wll~h 58 (64) T 2cpw_A 18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH 58 (64) T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 899999999996-99899999999997599999999999967 No 38 >>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} (A:) Probab=93.04 E-value=0.26 Score=29.02 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=32.9 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 55899999998719998999999996299-989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) ++...|.+|=++ |-+--.|++||..++| ++|.|++||-.. T Consensus 28 ~d~~~l~~L~~M-GF~~~~a~kAL~~t~n~~ve~A~~Wll~h 68 (84) T 1vek_A 28 ANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84) T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 999999999995-99999999999998699999999999987 No 39 >>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B (A:) Probab=92.59 E-value=0.26 Score=29.04 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=31.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 58999999987199989999999962999899999999 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) -...+.+||++-=.--..|-+||..++||+..|+++|. T Consensus 12 y~~QL~qL~~MGF~d~~~nl~AL~~t~Gdv~~Ai~~Ll 49 (52) T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLL 49 (52) T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999994899789999999992898999999987 No 40 >>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* (A:1-65) Probab=91.23 E-value=0.37 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH-HHH Q ss_conf 8999999987199989999999962999899999-999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAID-ILR 42 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~-~LR 42 (296) -.+|.+....||+.--.|+.-|+.++||++.|+. |.. T Consensus 16 ~~li~qF~~iTg~~~~~A~~~L~~~~wdLe~Ai~~yf~ 53 (65) T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD 53 (65) T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999999983899999999999869986999999984 No 41 >>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=89.96 E-value=0.66 Score=26.39 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=31.1 Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 999999871999-8999999996299989999999982 Q gi|254780778|r 8 AVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 8 ~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ++.+||+.||-- ..---+||..++||+..|+-+|-.+ T Consensus 27 ~LnQLrEITGI~D~q~L~~ALkas~Gdl~~AV~~LT~~ 64 (80) T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80) T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 99999997377859999999980378899999998527 No 42 >>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} (A:) Probab=89.78 E-value=0.37 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=31.5 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 55899999998719998999999996299-989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) ++...|++|=++ |-+--.|++||..+++ ++|.|++||-.. T Consensus 8 ~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 48 (64) T 1whc_A 8 AELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64) T ss_dssp CCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 699999999995-99999999999997699999999999987 No 43 >>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} (A:) Probab=89.72 E-value=0.58 Score=26.74 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=35.2 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 97355899999998719998999999996299989999999 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) |+.=.-.+|.+....||+.--.++.-|+.++||++.|+..- T Consensus 1 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~w~le~Ai~~f 41 (46) T 1v92_A 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41 (46) T ss_dssp CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 97529999999999989499999999999599699999999 No 44 >>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=88.63 E-value=0.5 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=30.3 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 55899999998719998999999996299-989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) ++...|++|=++ |-+--.|+|||..+++ ++|.|++||-.. T Consensus 8 ~d~~~l~~L~eM-GF~~~~a~kAL~~t~n~~ve~A~~Wl~~h 48 (64) T 2crn_A 8 SSPSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64) T ss_dssp CSCSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 884888899983-67389999999985511099999999972 No 45 >>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} (A:) Probab=86.87 E-value=1.9 Score=23.28 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=34.8 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 58999999987199989999999962999899999999 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) --++|.++-..||--.-=|.+.|+++++|++.|+.... T Consensus 7 q~~mi~~~~~~Tgln~e~s~~cLe~~~Wd~~~A~~~F~ 44 (59) T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999999788899999999985989999999999 No 46 >>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=86.18 E-value=1.5 Score=23.98 Aligned_cols=38 Identities=11% Similarity=-0.164 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) +....+|+++-=.--....+||.+++||+.+||+.|-. T Consensus 10 ~~qL~qL~eMGF~D~~~N~~aL~~~~Gnv~~ai~~Ll~ 47 (54) T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999999927452899999999826839999999998 No 47 >>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=84.36 E-value=2.1 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 8999999987199989999999962999899999999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) -.+|.+.+..||+.-.-.|.-|+.|+|++|-|+..-- T Consensus 16 ~~Li~qFtaITgate~vakhmLEAcn~NLEMAvtm~l 52 (62) T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHEEEEE T ss_conf 8899998872051789999999980777643301344 No 48 >>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=84.35 E-value=1.8 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHH Q ss_conf 8999999987199-9899999999629998999999 Q gi|254780778|r 6 AVAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDI 40 (296) Q Consensus 6 ~~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~ 40 (296) ...+-+....||. -+-.|++-|+..|||++.|+.- T Consensus 19 ~ekL~qFQ~iTGieD~~~~~~~Le~hnWdLe~Av~~ 54 (67) T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67) T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 998986655017420999999999836509999998 No 49 >>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A (A:) Probab=83.81 E-value=2.6 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.011 Sum_probs=35.1 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) .--++|.++-..||--.-=|.+.|+++++|++.|+....+ T Consensus 5 ~q~~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~~ 44 (57) T 2jp7_A 5 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57) T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999999995999999999999869889999999999 No 50 >>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:) Probab=83.28 E-value=1.8 Score=23.53 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=28.8 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999871999899999999629998999999998 Q gi|254780778|r 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 9 iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) |..|- .-|.+..|.++||.=+.+|+|-|-.+||+ T Consensus 15 I~~Lm-~~GYs~~dv~rAL~Ia~NniemA~~ILrE 48 (52) T 2ooa_A 15 IAKLX-GEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52) T ss_dssp HHHHH-HTTCCHHHHHHHHHHTTTCHHHHHHHHHH T ss_pred HHHHH-HCCCCHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 99999-85543999999999986219999999998 No 51 >>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=82.11 E-value=2.1 Score=23.05 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=29.3 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 999998719998999999996299989999999982 Q gi|254780778|r 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 9 iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) |..|- .-|.+..|.++||.=+.+|+|-|-.+||+= T Consensus 13 I~~Lm-~~GYs~~~v~rAL~Ia~NniemA~~ILrEF 47 (53) T 2d9s_A 13 IERLM-SQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53) T ss_dssp HHHHH-HHTCCHHHHHHHHHHTTTCHHHHHHHHHHH T ss_pred HHHHH-HCCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999-855339999999999862199999999997 No 52 >>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:) Probab=80.12 E-value=2.2 Score=22.92 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=27.1 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 19998999999996299989999999982 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) -|.+..|.++||.=+.+|+|-|-.+||+= T Consensus 17 ~GYs~~~V~rAL~Ia~NnvemA~~ILrEF 45 (56) T 2juj_A 17 QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56) T ss_dssp TTCCHHHHHHHHHHTTTCSHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 66659999999999871199999999998 No 53 >>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:) Probab=76.65 E-value=3.5 Score=21.55 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=27.0 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 19998999999996299989999999982 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) -|.+..|..+||.=+.+|+|-|-++||+= T Consensus 14 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF 42 (46) T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEXAKNILREF 42 (46) T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 67769999999999871099999999987 No 54 >>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} (A:) Probab=72.78 E-value=4.7 Score=20.73 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.8 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC Q ss_conf 589999999871999899999999629 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAK 31 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296) .++.||.+|+.||.|+++.|+..+.+. T Consensus 19 Ki~vIK~vR~itgl~L~eAK~lve~~P 45 (74) T 1ctf_A 19 KVAVIKAVRGATGLGLKEAKDLVESAP 45 (74) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTCS T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 025889998865985899999887188 No 55 >>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} (A:41-120) Probab=71.25 E-value=5.2 Score=20.44 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC Q ss_conf 89999999871999899999999629 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAK 31 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296) ++.||.+|..||.|+++.|+..+.+. T Consensus 26 i~vIK~VR~itglgL~eAK~lve~~P 51 (80) T 1rqu_A 26 VAVIKAVRGATGLGLKEAKDLVESAP 51 (80) T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHTCS T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 17899999825998899999987087 No 56 >>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:58-128) Probab=64.84 E-value=6.9 Score=19.61 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC Q ss_conf 89999999871999899999999629 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAK 31 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296) ++.||++|..||-|+++.|+..+.+. T Consensus 14 i~vIK~Vr~itglgLkEAK~lVe~~P 39 (71) T 1dd3_A 14 IQVIKVVREITGLGLKEAKDLVEKAG 39 (71) T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTTTT T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 58999998855998899999997157 No 57 >>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:66-137) Probab=64.82 E-value=5.8 Score=20.08 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=24.7 Q ss_pred CHHHHHHHHH-HHCCCHHHHHHHHHHCCCCH Q ss_conf 5899999998-71999899999999629998 Q gi|254780778|r 5 SAVAVKELRG-KTGAGIMDCKNALLEAKGDS 34 (296) Q Consensus 5 t~~~iK~LR~-~Tgag~~dCKkAL~e~~gD~ 34 (296) .++.||.+|+ .||.|+++.|+..+.+..-+ T Consensus 16 Ki~vIK~vr~~~tglgL~eAK~lVe~~P~~i 46 (72) T 2ftc_E 16 KVKLIKEIKNYVQGINLVQAKKLVESLPQEI 46 (72) T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH T ss_conf 4579999998717998799999987088888 No 58 >>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} (5:) Probab=56.86 E-value=7 Score=19.55 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=17.1 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH Q ss_conf 34434443035432157899988565566765433204587836277 Q gi|254780778|r 166 GSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSI 212 (296) Q Consensus 166 GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~ 212 (296) .||.+|=.+..-. + --+.+ +|++ += .|..| .++|+.+- T Consensus 67 ~Ki~vIK~vR~it-~-LgLkE-AK~l----VE-~p~~i-ke~vsKee 104 (122) T 2zjq_5 67 SKINVIKEIRGIT-G-LGLKE-AKDM----SE-KGGVL-KEGVAKDE 104 (122) T ss_pred CCCCHHHHHHHCC-C-CCHHH-HHHH----HH-CCHHH-HCCCCHHH T ss_conf 6520134987617-9-98899-9987----60-76577-51899999 No 59 >>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} (A:1-31) Probab=40.89 E-value=9.5 Score=18.67 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=10.5 Q ss_pred EEEECCHHHCCHH Q ss_conf 9840310102267 Q gi|254780778|r 77 VNVETDSLAKNTD 89 (296) Q Consensus 77 incETDFVAkn~~ 89 (296) +.|--||||||.. T Consensus 4 ~~~~YdF~ARN~~ 16 (31) T 1i07_A 4 AKSKYDFVARNSS 16 (31) T ss_dssp EEESSCBCCSSTT T ss_pred CEEEEEECCCCCC T ss_conf 0432025047888 No 60 >>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=39.16 E-value=26 Score=15.71 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.0 Q ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871-999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) -+.++.|+++= +------+--|.+++|++|.|++-|-. T Consensus 19 e~~~~~LkemFP~iD~~vI~~VL~a~~g~vd~aid~LL~ 57 (67) T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67) T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999877768999999999929987999999984 No 61 >>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} (A:) Probab=35.06 E-value=31 Score=15.29 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.0 Q ss_pred CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871-999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ++-+.++.|+++= +.----.+--|..++|++|.||+-|-. T Consensus 8 ~~~~~~~~Lk~mFP~iD~~vI~aVL~a~~G~~e~ai~~LL~ 48 (59) T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59) T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 76999999999878887999999999939977999999982 No 62 >>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304) Probab=33.72 E-value=32 Score=15.15 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=16.5 Q ss_pred HHHHHHHCCCCHHHHHHHH Q ss_conf 9999996299989999999 Q gi|254780778|r 23 CKNALLEAKGDSELAIDIL 41 (296) Q Consensus 23 CKkAL~e~~gD~e~Ai~~L 41 (296) -.+||..|+||+.+|-+.| T Consensus 20 I~~aL~~~~Gn~~~aA~~L 38 (51) T 1ojl_A 20 ILAALEKTGGNKTEAARQL 38 (51) T ss_dssp HHHHHHTTTTCHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHH T ss_conf 9999999299899999998 No 63 >>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} (A:) Probab=33.26 E-value=33 Score=15.10 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.7 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 19998999999996299989999999 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) -|-.-.+.-+||..+|||++-|--+| T Consensus 14 mgfdpleaaqaldaangdldvaasfl 39 (40) T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40) T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 17887899988754047578889862 No 64 >>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygenase, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A (A:78-152) Probab=29.15 E-value=14 Score=17.63 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=35.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHEECCCCCEEEEEEEEECC Q ss_conf 29998999999998238899865103364220-000440788536999984031 Q gi|254780778|r 30 AKGDSELAIDILRTKGAMAASKREGRKVSEGL-IGIARDGYKKASIVEVNVETD 82 (296) Q Consensus 30 ~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~-v~~~~~~~~~a~liEincETD 82 (296) ...|++.+.++|+.+|+........|....|- -+++.-+. -+.+||+.|-++ T Consensus 16 v~~d~d~~~~~L~~~Gv~i~~~p~~~~~~~~~~~siYf~DP-dG~~iEl~~~~~ 68 (75) T 3huh_A 16 TSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDP-DGNLIEISQYVE 68 (75) T ss_dssp ESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECT-TCCEEEEEEC-- T ss_pred EECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECC T ss_conf 83107899999987186522387332268886899999999-999899988889 No 65 >>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61) Probab=28.73 E-value=15 Score=17.41 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=16.2 Q ss_pred HHHHHHCCCHHHHH--HHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99987199989999--9999629998999999998238 Q gi|254780778|r 11 ELRGKTGAGIMDCK--NALLEAKGDSELAIDILRTKGA 46 (296) Q Consensus 11 ~LR~~Tgag~~dCK--kAL~e~~gD~e~Ai~~LRkkG~ 46 (296) +||.+-.+.-+-.+ .+......+||.+|.|..++|| T Consensus 24 ELRrKL~a~~f~~~~~e~~~~~~eeIe~vIa~C~q~~w 61 (61) T 3c1d_A 24 ELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGY 61 (61) T ss_dssp HHHHHHHCC-----------CCHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 99999998732113421224789999999999999399 No 66 >>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.92A {Bacillus anthracis str} (A:71-126) Probab=28.51 E-value=38 Score=14.68 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=29.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECC Q ss_conf 998999999998238899865103364220000440788536999984031 Q gi|254780778|r 32 GDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETD 82 (296) Q Consensus 32 gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincETD 82 (296) -|++++.+.|+++|.... ....-.|.-.++..+. -|.+||+..-+| T Consensus 11 ddi~~~~~~L~~~Gv~~~----~~~~~~g~~~~~~~DP-dG~~iEl~~~~~ 56 (56) T 2qqz_A 11 LKIDEFKQELIKQGIEVI----DDHARPDVIRFYVSDP-FGNRIEFXENKN 56 (56) T ss_dssp TTHHHHHHHHHHTTCCCE----EECSSTTEEEEEEECT-TSCEEEEEEECC T ss_pred CCHHHHHHHHHHCCCEEE----CCCCCCCEEEEEEECC-CCCEEEEEECCC T ss_conf 978999999987696074----7777698589999989-999999998389 No 67 >>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} (A:) Probab=27.88 E-value=40 Score=14.51 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=10.8 Q ss_pred CCCCCCCCHHHHHHHHHHHCC Q ss_conf 002777439999987764207 Q gi|254780778|r 256 FVVDPSKTVSDFLKESEKSIG 276 (296) Q Consensus 256 fv~D~~~tV~~~l~e~~k~~g 276 (296) ++.|+++||++++...+..+| T Consensus 26 ~~VDDSqtV~~l~~~IC~kiG 46 (128) T 2kc2_A 26 IMVDDSKTVTDMLMTICARIG 46 (128) T ss_dssp EEEEECSSHHHHHHHHHHHHT T ss_pred EEEECCCCHHHHHHHHHHHHC T ss_conf 996086279999999998758 No 68 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:729-811) Probab=23.27 E-value=48 Score=13.95 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHHHHHHHCC---H--HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99885655667654332045---8--7836277776656667763125786789977740 Q gi|254780778|r 185 SAIGEKIAVHVMLASPSVIS---V--QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239 (296) Q Consensus 185 ~~~ak~iAmhiaA~~P~~l~---~--~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~ 239 (296) ++-.-+|||+++++.|-=-+ + ..=+++.+++.++.+.+.+...|-|++..++|-+ T Consensus 16 QEQvm~ia~~~agfs~~ead~lRram~kK~~~~~~~~~~~F~~ga~~~G~~~~~a~~i~~ 75 (83) T 2hpi_A 16 QEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFD 75 (83) T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHSCCSHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 989998899865898077899998756475888877654312322234567999999999 No 69 >>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} (A:17-98) Probab=22.74 E-value=30 Score=15.33 Aligned_cols=11 Identities=0% Similarity=-0.275 Sum_probs=4.5 Q ss_pred HHHHHHHHHHH Q ss_conf 78999985434 Q gi|254780778|r 126 GIKQQIAITGE 136 (296) Q Consensus 126 ~i~~~ia~iGE 136 (296) .+.+++...|- T Consensus 20 iis~l~~~~~i 30 (82) T 3ced_A 20 IVSSLSTAYDI 30 (82) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHCC T ss_conf 99999998599 No 70 >>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:47-121) Probab=22.41 E-value=48 Score=14.00 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCCCCCHHHHHHHHHHCCCC Q ss_conf 46778999985434310244431022--221000001353234603443444303543 Q gi|254780778|r 123 VGDGIKQQIAITGECIKLRRSALLCV--SEGVISSYLHASPSEGLGSIGVLVALQSSA 178 (296) Q Consensus 123 v~d~i~~~ia~iGEnI~l~R~~~~~~--~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~ 178 (296) .+|.++-+++-..+-=.+++..-+.- .+|.+..-.-+| =-+.++..+.++. T Consensus 10 PGDiRncL~ALa~~~~~~~~l~qyRF~~g~g~L~GH~lGN-----L~laaL~e~~G~~ 62 (75) T 2q7x_A 10 PGDLRNVLVAXSDXPXFYEXVFQYRFSEDAGAFAGHPLGN-----LIIAGLSEXQGST 62 (75) T ss_dssp CHHHHHHHHHTSSCHHHHHHHTTCBCCC----CCSCBTTH-----HHHHHHHHHHSSH T ss_pred CHHHHHHHHHHCCCCHHHHHHHEEECCCCCCCCCCCHHHH-----HHHHHHHHHCCCH T ss_conf 5469999998535843443214256666888601263657-----9999898762999 No 71 >>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus} (A:101-253) Probab=20.88 E-value=54 Score=13.64 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=37.4 Q ss_pred HHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHH Q ss_conf 6765433204587836277776656667763125786789977740167666423330256000277743--9999987 Q gi|254780778|r 194 HVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKT--VSDFLKE 270 (296) Q Consensus 194 hiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~t--V~~~l~e 270 (296) --|-.+|.+|+.+++.--+...=+ -+..--+|.++|++|.+.|-++. +-.+=-|++.| +.+++++ T Consensus 46 ~~A~~~~I~lTkdei~~~i~N~L~-----v~~~k~~~~Ev~~rI~e~R~s~i-------~~~~~~~g~~t~y~~q~~~d 112 (153) T 2vla_A 46 LTADNNNIQLSKDDIAYYVLNSLQ-----VLQGKIKPIEVIEKIIEDRSNDI-------TKKVRHPGKETSYSMQHIRE 112 (153) T ss_dssp HHHHHTTCCBCHHHHHHHTTTBHH-----HHTTCCCHHHHHHHHHHHHHTTC-------CCCCCCTTCCHHHHHHHHHH T ss_pred HHHCCCCEEECHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHH T ss_conf 860456157326777899862456-----74189867899999987132233-------67505997320489999999 No 72 >>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A* (A:67-133) Probab=20.65 E-value=24 Score=15.97 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHEECCCCCEEEEEEEEECC Q ss_conf 299989999999982388998651033642200-00440788536999984031 Q gi|254780778|r 30 AKGDSELAIDILRTKGAMAASKREGRKVSEGLI-GIARDGYKKASIVEVNVETD 82 (296) Q Consensus 30 ~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v-~~~~~~~~~a~liEincETD 82 (296) .+-|++.+.+.|+.+|.....--..|....|-. +++..+. -|-+||+.|--| T Consensus 14 v~~~~d~~~~~L~~~Gv~i~~~p~~~~~~~g~~~siYf~DP-dG~~iEl~~~p~ 66 (67) T 3ey7_A 14 TDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFYFRDP-DGNLIEVSTYSN 66 (67) T ss_dssp CSSCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECT-TCCEEEEEESCC T ss_pred ECCHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCC T ss_conf 52148899999997597400287232278886899999999-999999897768 No 73 >>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens} (A:) Probab=20.22 E-value=54 Score=13.66 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=30.4 Q ss_pred CHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHHHHHHHH---HH--CCHHHCCHHHHH Q ss_conf 603443444303543-----------------2157899988565566765433---20--458783627777 Q gi|254780778|r 164 GLGSIGVLVALQSSA-----------------EDKELLSAIGEKIAVHVMLASP---SV--ISVQMLDPSIVA 214 (296) Q Consensus 164 ~~GkigvlV~l~~~~-----------------~~~~~~~~~ak~iAmhiaA~~P---~~--l~~~~v~~~~i~ 214 (296) ..||+|.++.+..+. .+......+|++|+-||...+| .. |.-.+.+.+.+. T Consensus 38 Q~Gklgt~~~v~~~~~~~~~~~p~~~~~vLlG~de~l~~~~Arql~~~i~~~~~~r~lvl~LgLkd~s~e~~~ 110 (122) T 2z5e_A 38 QFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQDEPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLK 110 (122) T ss_dssp STTCCCEEEEEEECSSCCSSSSCCEEEEEEESCCCHHHHHHHHHHHHHHHHHTTSCEEEEEEECSSCCHHHHH T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH T ss_conf 0672038999366666788888864467976688589999999999997155899518999426558988999 Done!