HHsearch results for GI: 254780778 and protein with PDBid: 1aip_C
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=0 Score=470.50 Aligned_cols=195 Identities=36% Similarity=0.582 Sum_probs=186.1
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCEEEEEEEE
Q ss_conf 9735589999999871999899999999629998999999998238899865103364220000440-788536999984
Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARD-GYKKASIVEVNV 79 (296)
Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~-~~~~a~liEinc 79 (296)
||. +++||+||++||||||||||||.||+||+|+|++|||++|+++|+||++|.|+||+|+++.. +.+.|+||||||
T Consensus 1 ms~--~~lvk~LR~~Tgag~~dcKkAL~e~~gD~~~A~~~Lrk~G~~~A~kk~~r~a~eG~i~~~v~~~~~~~~lvelnc 78 (196)
T 1aip_C 1 MSQ--MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNC 78 (196)
T ss_dssp -CH--HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEEC
T ss_pred CCC--HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 974--799999999879799999999998489899999999983425778776673215569999963897799999965
Q ss_pred ECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 03101022679999998887531033565778640041000014677899998543431024443102222100000135
Q gi|254780778|r 80 ETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHA 159 (296)
Q Consensus 80 ETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~ 159 (296)
||||||||+.|++
T Consensus 79 ETDFVarn~~F~~------------------------------------------------------------------- 91 (196)
T 1aip_C 79 ETDFVARNELFQN------------------------------------------------------------------- 91 (196)
T ss_dssp SSHHHHTSHHHHH-------------------------------------------------------------------
T ss_pred CCCHHHCCCHHHH-------------------------------------------------------------------
T ss_conf 8840430730677-------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 32346034434443035432157899988565566765433204587836277776656667763125786789977740
Q gi|254780778|r 160 SPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239 (296)
Q Consensus 160 ~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~ 239 (296)
|+++|||||+|++|.|++.++||++++++|++++..++..+|||++|+++|++
T Consensus 92 ---------------------------la~~iAmhiaa~~P~~~~~~dv~~~~i~~e~~i~~~~~~~~gKp~~i~ekiv~ 144 (196)
T 1aip_C 92 ---------------------------LAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAE 144 (196)
T ss_dssp ---------------------------HHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf ---------------------------89999999984197658811289999988888999998735880888988843
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 1676664233302560002777439999987764207982899889876224
Q gi|254780778|r 240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296)
Q Consensus 240 Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296)
||++|||+|+||++|||++||+.||+++|++..+++|.+|+|++|+||+||-
T Consensus 145 Gkl~kf~~e~~Ll~Q~~v~d~~~tV~~~l~~~~~~lGe~I~i~~F~r~~~G~ 196 (196)
T 1aip_C 145 GRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 196 (196)
T ss_dssp HHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
T ss_conf 7643310123201586306897529999999998608980899999998169