HHsearch results for GI: 254780778 and protein with PDBid: 1vg5_A
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.56 E-value=0.0033 Score=40.70 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3558999999987199989999999962999899999999
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
.++-+.|.+|.++ |..--.|+.||..|+||+|.|++||-
T Consensus 27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll 65 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8699999999991-89999999999992999999999998