HHsearch results for GI: 254780778 and protein with PDBid: 1vg5_A

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.56  E-value=0.0033  Score=40.70  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             3558999999987199989999999962999899999999
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      .++-+.|.+|.++ |..--.|+.||..|+||+|.|++||-
T Consensus        27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll   65 (73)
T 1vg5_A           27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM   65 (73)
T ss_dssp             CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             8699999999991-89999999999992999999999998