Query gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] Match_columns 296 No_of_seqs 132 out of 2145 Neff 6.2 Searched_HMMs 23785 Date Mon May 30 13:48:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3agp_A Elongation factor TS, e 100.0 0 0 681.7 19.5 263 1-291 1-263 (1289) 2 3mmp_A Elongation factor TU 2, 100.0 0 0 649.3 18.0 264 1-292 1-264 (678) 3 1efu_B Elongation factor TS; c 100.0 0 0 609.8 19.8 264 2-293 1-264 (282) 4 1xb2_B EF-TS, elongation facto 100.0 0 0 538.7 13.0 251 2-293 1-277 (291) 5 1aip_C EF-TS, elongation facto 100.0 0 0 470.5 18.7 195 1-291 1-196 (196) 6 1tfe_A Elongation factor TS; 1 100.0 2.5E-42 0 301.2 9.4 138 149-291 2-142 (145) 7 2cp9_A EF-TS, EF-TSMT, elongat 99.8 7.4E-20 3.1E-24 151.5 4.3 59 2-60 6-64 (64) 8 1tfe_A Elongation factor TS; 1 98.9 1.2E-09 4.8E-14 83.7 3.6 92 57-148 1-140 (145) 9 1xb2_B EF-TS, elongation facto 97.3 0.00058 2.4E-08 45.7 6.8 116 135-290 48-166 (291) 10 1vg5_A RSGI RUH-014, rhomboid 96.6 0.0033 1.4E-07 40.7 5.3 39 3-42 27-65 (73) 11 1wiv_A UBP14, ubiquitin-specif 96.2 0.0092 3.9E-07 37.7 5.9 41 3-44 27-67 (73) 12 1ify_A HHR23A, UV excision rep 96.0 0.0064 2.7E-07 38.8 4.5 36 7-43 10-45 (49) 13 1wr1_B Ubiquitin-like protein 95.9 0.012 5.2E-07 36.8 5.4 37 7-43 19-55 (58) 14 1wj7_A Hypothetical protein (R 95.9 0.012 5.1E-07 36.9 5.3 38 7-44 41-78 (104) 15 2dai_A Ubadc1, ubiquitin assoc 95.6 0.02 8.5E-07 35.4 5.7 42 3-45 27-68 (83) 16 1wji_A Tudor domain containing 95.4 0.025 1.1E-06 34.8 5.5 41 3-44 7-47 (63) 17 2dak_A Ubiquitin carboxyl-term 95.1 0.031 1.3E-06 34.2 5.3 41 3-44 7-47 (63) 18 1tr8_A Conserved protein (MTH1 94.9 0.039 1.7E-06 33.5 5.2 39 3-41 63-101 (102) 19 1vej_A Riken cDNA 4931431F19; 94.8 0.047 2E-06 33.0 5.4 40 6-45 30-69 (74) 20 1wgn_A UBAP1, ubiquitin associ 94.8 0.029 1.2E-06 34.4 4.4 38 6-44 20-57 (63) 21 2dna_A Unnamed protein product 94.8 0.056 2.4E-06 32.5 5.8 39 6-44 20-58 (67) 22 2knz_A Ubiquilin-4; cytoplasm, 94.6 0.045 1.9E-06 33.1 4.9 36 7-42 13-48 (53) 23 2dag_A Ubiquitin carboxyl-term 93.7 0.13 5.3E-06 30.2 5.7 42 2-44 6-48 (74) 24 2dah_A Ubiquilin-3; UBA domain 93.6 0.13 5.6E-06 30.0 5.7 39 6-44 10-48 (54) 25 2jy5_A Ubiquilin-1; UBA, alter 93.3 0.12 5.2E-06 30.2 5.2 36 6-41 13-48 (52) 26 2bwb_A Ubiquitin-like protein 93.2 0.14 5.7E-06 29.9 5.2 36 7-42 9-44 (46) 27 2cwb_A Chimera of immunoglobul 93.1 0.13 5.4E-06 30.1 5.0 39 7-45 68-106 (108) 28 1whc_A RSGI RUH-027, UBA/UBX 3 92.9 0.089 3.8E-06 31.1 4.0 41 3-44 7-48 (64) 29 2cpw_A CBL-interacting protein 92.8 0.091 3.8E-06 31.1 3.9 39 5-44 19-58 (64) 30 2g3q_A Protein YBL047C; endocy 92.8 0.082 3.5E-06 31.4 3.6 37 6-43 5-41 (43) 31 3agp_A Elongation factor TS, e 92.4 0.18 7.5E-06 29.2 5.0 28 59-86 140-167 (1289) 32 1efu_B Elongation factor TS; c 92.1 0.1 4.3E-06 30.8 3.4 48 147-201 55-105 (282) 33 1vek_A UBP14, ubiquitin-specif 90.7 0.46 2E-05 26.4 5.6 40 4-44 28-68 (84) 34 1vdl_A Ubiquitin carboxyl-term 90.6 0.38 1.6E-05 27.0 5.1 38 7-44 26-64 (80) 35 1aip_C EF-TS, elongation facto 89.4 0.099 4.1E-06 30.9 1.3 68 121-196 30-97 (196) 36 1v92_A NSFL1 cofactor P47; 3-h 89.3 0.6 2.5E-05 25.6 5.3 45 1-45 1-45 (46) 37 1oai_A Nuclear RNA export fact 86.3 1.5 6.4E-05 23.0 5.8 38 5-42 7-44 (59) 38 2dal_A Protein KIAA0794; FAS a 84.8 1.3 5.3E-05 23.5 4.8 37 7-43 17-53 (62) 39 2jp7_A MRNA export factor MEX6 84.5 1.2 5.1E-05 23.6 4.6 41 3-43 4-44 (57) 40 2ooa_A E3 ubiquitin-protein li 81.2 1.7 7E-05 22.7 4.2 39 3-43 10-48 (52) 41 2dam_A ETEA protein; KIAA0887, 79.5 2.9 0.00012 21.0 5.0 34 7-40 20-54 (67) 42 2d9s_A CBL E3 ubiquitin protei 79.3 2.1 8.8E-05 22.0 4.2 40 3-44 8-47 (53) 43 2oo9_A E3 ubiquitin-protein li 78.9 1.9 8.2E-05 22.2 4.0 29 16-44 14-42 (46) 44 2juj_A E3 ubiquitin-protein li 76.1 2.4 0.0001 21.6 3.8 29 16-44 17-45 (56) 45 1ctf_A Ribosomal protein L7/L1 73.6 3 0.00013 20.9 3.8 27 6-32 20-46 (74) 46 3bq3_A Defective in cullin ned 70.4 5.7 0.00024 19.1 5.0 37 6-42 16-52 (270) 47 1rqu_A L8, 50S ribosomal prote 52.1 12 0.0005 17.0 3.6 14 128-141 20-33 (120) 48 1wgl_A TOLL-interacting protei 50.8 12 0.00052 16.9 4.8 40 4-43 8-48 (59) 49 2j01_L 50S ribosomal protein L 43.9 8.5 0.00036 18.0 1.7 14 128-141 21-34 (125) 50 2kc2_A Talin-1, F1; FERM, adhe 41.7 15 0.00064 16.3 2.7 18 121-142 32-49 (128) 51 2cp8_A NEXT to BRCA1 gene 1 pr 38.8 19 0.00079 15.7 5.0 40 4-43 8-47 (54) 52 2zjq_5 50S ribosomal protein L 38.7 6.3 0.00027 18.8 0.4 50 166-228 67-116 (122) 53 1z96_A DNA-damage, UBA-domain 33.3 23 0.00097 15.1 3.9 26 16-41 14-39 (40) 54 3k6g_A Telomeric repeat-bindin 33.0 23 0.00097 15.1 5.8 36 7-42 15-50 (111) 55 2ftc_E Mitochondrial ribosomal 32.5 24 0.00099 15.0 5.2 15 128-142 19-33 (137) 56 2dhy_A CUE domain-containing p 29.1 27 0.0011 14.6 5.1 38 6-43 19-57 (67) 57 2qsw_A Methionine import ATP-b 22.6 25 0.0011 14.8 1.2 15 122-136 35-49 (100) 58 2c21_A Trypanothione-dependent 21.0 31 0.0013 14.2 1.4 15 32-46 17-32 (144) 59 2dgb_A Hypothetical protein PU 20.2 20 0.00086 15.4 0.3 21 172-192 44-64 (84) No 1 >3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A Probab=100.00 E-value=0 Score=681.71 Aligned_cols=263 Identities=40% Similarity=0.590 Sum_probs=247.0 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE Q ss_conf 97355899999998719998999999996299989999999982388998651033642200004407885369999840 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE 80 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE 80 (296) ||+|||++||+||++||||||||||||+|++||+|+|++|||+||+++|+||++|.|+||+|+++.++ +.|+|+||||| T Consensus 1 Ma~ITA~~VKeLRe~TGAGMMDCKkAL~E~~GD~ekAie~LRkkG~a~AaKKa~R~aaEGli~~~~~~-~~~~lvEvN~E 79 (1289) T 3agp_A 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ 79 (1289) T ss_dssp -CCSCHHHHHHHHHHHCCCSHHHHHHHHTTTSCHHHHHHHHHHTTHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC T ss_conf 98548999999998749948899999877588899999999986358777646610027549999739-87999999767 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 31010226799999988875310335657786400410000146778999985434310244431022221000001353 Q gi|254780778|r 81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS 160 (296) Q Consensus 81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~ 160 (296) |||||||+.|++|++++++.++.++.+..+.+. .|++|.+.+++++|||||+|||+.++ +++++++|+|+ T Consensus 80 TDFVAkne~F~~l~~~i~~~~~~~~~~~~e~l~-------~~~~e~~~~~ia~iGEni~lrR~~~~--~~~~v~~Y~H~- 149 (1289) T 3agp_A 80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK-------AQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG- 149 (1289) T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHTTCCSHHHHH-------HHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC- T ss_conf 664227827999999999999855988899987-------07999999998760687799889997--28879999729- Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 23460344344430354321578999885655667654332045878362777766566677631257867899777401 Q gi|254780778|r 161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 (296) Q Consensus 161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G 240 (296) |||||||++++.++ +++|+||||||||+|.||++++||++++++|++|+++|++++|||++|++|||+| T Consensus 150 -----~kIgvlV~~~~~~~------e~akdiAMhIAA~~P~~ls~~~vp~~vve~Er~i~~~qa~~~GKPe~I~eKIveG 218 (1289) T 3agp_A 150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 (1289) T ss_dssp -----TTEEEEEEETTCCH------HHHHHHHHHHHTTCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred -----CEEEEEEEECCCCH------HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf -----97999999568759------9998899999853873188156999999999999999998739979999999878 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 676664233302560002777439999987764207982899889876224 Q gi|254780778|r 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) ||+|||+|+|||+|+||+||++||++||++. +.+|++|+||+||| T Consensus 219 rl~kf~~E~~Ll~Q~fVkD~~~tV~~~l~~~------~~~v~~F~R~evGE 263 (1289) T 3agp_A 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGE 263 (1289) T ss_dssp HHHHHHHHTBGGGSBCTTSTTSBHHHHHHHT------TCCCCEEEEEETTT T ss_pred HHHHHHHHHEECCCCEEECCCCCHHHHHHHC------CCEEEEEEEEEECC T ss_conf 8887745632136850327963199999867------99799999997448 No 2 >3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli} Probab=100.00 E-value=0 Score=649.29 Aligned_cols=264 Identities=39% Similarity=0.586 Sum_probs=247.4 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE Q ss_conf 97355899999998719998999999996299989999999982388998651033642200004407885369999840 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE 80 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE 80 (296) ||+|||++||+||++||||||||||||+|++||+|+|++||||+|+++|+||++|.|+||+|+++.++ +.|+|+||||| T Consensus 1 m~~ita~~vk~LR~~Tg~g~~~ckkAL~e~~gd~e~A~~~Lr~~G~~~a~k~~~r~~~eG~i~~~~~~-~~~~~velncE 79 (678) T 3mmp_A 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ 79 (678) T ss_dssp ---CCHHHHHHHHHHHCCCHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC T ss_conf 98668999999998869849999999988699899999999996689888645964357589999759-99999999813 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 31010226799999988875310335657786400410000146778999985434310244431022221000001353 Q gi|254780778|r 81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS 160 (296) Q Consensus 81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~ 160 (296) |||||||+.|++|++.+++.++.++.+..+.+ ..+++|.+.++++++||||+|+|+..+ +++++++|.|+ T Consensus 80 TDFVarn~~F~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~i~~igEni~l~r~~~~--~~~~~~~y~h~- 149 (678) T 3mmp_A 80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVL-------KAQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG- 149 (678) T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHTTCCCHHHH-------HHHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC- T ss_conf 74650885799999999999974698778988-------606888999998861761899579986--18767999739- Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 23460344344430354321578999885655667654332045878362777766566677631257867899777401 Q gi|254780778|r 161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 (296) Q Consensus 161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G 240 (296) |+||+||++++.+. +++|+||||||||+|.||++++||++++++|++++++++.++|||++|++||++| T Consensus 150 -----~kig~lv~~~~~~~------~~~k~iamhiaa~~P~~~~~~~v~~~~i~~e~~i~~~~~~~~gKp~~i~ekiv~G 218 (678) T 3mmp_A 150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 (678) T ss_dssp -----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCTTTSTTHHHHHHHHHTTSCCCHHHHHHHHHH T ss_pred -----CEEEEEEEECCCCH------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf -----84999999558859------9987556886143877244134987888889999999998759968999876430 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC Q ss_conf 6766642333025600027774399999877642079828998898762241 Q gi|254780778|r 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE 292 (296) Q Consensus 241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~ 292 (296) ||+|||+|+|||+||||+||++||++||+++ +++|++|+||+|||. T Consensus 219 kl~kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~------~~~i~~f~R~~vGe~ 264 (678) T 3mmp_A 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEG 264 (678) T ss_dssp HHHHHHHHTBGGGSEETTEEEEEHHHHHHHT------TCEEEEEEEEETTTT T ss_pred HHHHHHHHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCC T ss_conf 0211234414256851259963699999877------998989999973684 No 3 >1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Probab=100.00 E-value=0 Score=609.77 Aligned_cols=264 Identities=37% Similarity=0.529 Sum_probs=245.4 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEC Q ss_conf 73558999999987199989999999962999899999999823889986510336422000044078853699998403 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVET 81 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincET 81 (296) |+||+++||+||++||||||||||||++++||+|+|++|||++||++|+|+++|.|+||+|+++.++ +.|+|+|||||| T Consensus 1 a~ita~lik~LR~~Tga~~~~CKkAL~~~~gD~e~A~~~LrkkG~~kA~K~~~R~t~eG~I~~~~~~-~~~~mvElNCET 79 (282) T 1efu_B 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQT 79 (282) T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESC T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCHHCCCEEEEECC-CEEEEEEEECCC T ss_conf 9778999999998869869999999998589899999999996779988762701003614676539-868999995241 Q ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 10102267999999888753103356577864004100001467789999854343102444310222210000013532 Q gi|254780778|r 82 DSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASP 161 (296) Q Consensus 82 DFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~ 161 (296) ||||||+.|++|+++++++++.++.+... ..+.++.+.+.+++++|||||.|+|+.++..+ +++|.|++ T Consensus 80 DFVArNe~F~~l~~~ia~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~igEni~l~r~~~~~~~---~~~y~h~~- 148 (282) T 1efu_B 80 DFVAKDAGFQAFADKVLDAAVAGKITDVE-------VLKAQFEEERVALVAKIGENINIRRVAALEGD---VLGSYQHG- 148 (282) T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHCSCCEEEEEEEEECS---EEEEEEET- T ss_pred CCHHCCHHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC---CCEEEECC- T ss_conf 10106734899999999999845743100-------01123677899999873642245226787415---43033126- Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 34603443444303543215789998856556676543320458783627777665666776312578678997774016 Q gi|254780778|r 162 SEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 (296) Q Consensus 162 ~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gk 241 (296) +++|+++.+++... ++++++||||+|++|.|++++++|++++++|++++..|+..+|||++|++||++|| T Consensus 149 ----~kig~lv~~~~~~~------~~~k~iamhiaa~~P~~l~~~~v~~~~i~~E~~i~~~q~~~~gKP~~i~ekii~Gk 218 (282) T 1efu_B 149 ----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 (282) T ss_dssp ----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred ----CCEEEEEECCCCHH------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH T ss_conf ----52356640442189------99988876551258620244445088898888889999997599745564212104 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC Q ss_conf 7666423330256000277743999998776420798289988987622412 Q gi|254780778|r 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEN 293 (296) Q Consensus 242 l~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~ 293 (296) ++|||+|+|||+||||+||++||++||++. +++|++|+||+|||.. T Consensus 219 l~k~~~E~~LleQ~fv~D~~~tV~~~L~~~------~~~V~~F~R~evGEgi 264 (282) T 1efu_B 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGI 264 (282) T ss_dssp HHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTS T ss_pred HHHHHHHHEEECCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCE T ss_conf 665542312313761079820599999976------9979899999727863 No 4 >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Probab=100.00 E-value=0 Score=538.67 Aligned_cols=251 Identities=30% Similarity=0.437 Sum_probs=216.8 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEE Q ss_conf 7355899999998719998999999996299989999999982----388998651033642200004407885369999 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK----GAMAASKREGRKVSEGLIGIARDGYKKASIVEV 77 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk----G~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEi 77 (296) |.+|+++||+||++||||||||||||+||+||+|+|++|||++ |+++|+||++|.|+||+|+++.++ +.++|||| T Consensus 1 ~a~s~~lIK~LR~~TgagmmdCKkAL~e~~gD~ekAie~LRkk~~~~G~akA~Kk~~R~a~EG~v~~~~~~-~~a~lvEl 79 (291) T 1xb2_B 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEV 79 (291) T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEE T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CEEEEEEE T ss_conf 93569999999988698699999999985998999999999851565798888762435243489995178-54899999 Q ss_pred EEECCHHHCCHHHHHHHHHHHHHHHHCCCC--------------HHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 840310102267999999888753103356--------------57786400-410000146778999985434310244 Q gi|254780778|r 78 NVETDSLAKNTDFQSLVSNIAGIALSTDGS--------------LDNVLAMP-FDHSGITVGDGIKQQIAITGECIKLRR 142 (296) Q Consensus 78 ncETDFVAkn~~F~~l~~~i~~~~l~~~~~--------------~~~~~~~~-~~~~~~tv~d~i~~~ia~iGEnI~l~R 142 (296) ||||||||||+.|++|+++++..++.+..+ ...+..++ ....+.||+|.+.+++++|||||+||| T Consensus 80 nCETDFVAkn~~F~~fa~~ia~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~tv~d~i~~~i~kiGEnI~lrR 159 (291) T 1xb2_B 80 NCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKR 159 (291) T ss_dssp EESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEE T ss_pred EECCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 71230022458899999999999986054437787543233332444776530343477099999999987265236666 Q ss_pred HHHCCCCCC-CEEEECCCCCCCC------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHH Q ss_conf 431022221-0000013532346------034434443035432157899988565566765433204587836277776 Q gi|254780778|r 143 SALLCVSEG-VISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVAN 215 (296) Q Consensus 143 ~~~~~~~~~-~v~~Y~H~~~~~~------~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~ 215 (296) +.+++.+.+ ++++|+|++...+ +|++|++|.++.+.. ...+.+++++||||++|++|.++++.+ T Consensus 160 ~~~~~~~~g~~vg~Y~H~~~~~~~~~~~~~gk~~a~v~~~~~~~-~~~~~~~~k~ia~~i~a~~p~~i~~~~-------- 230 (291) T 1xb2_B 160 AAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL-KANLADLGRRLGQHVVGMAPLSVGSLD-------- 230 (291) T ss_dssp EEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC-GGGCHHHHHHHHHHHHHHCCSBCCCTT-------- T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCCCHHH-------- T ss_conf 78864167850444652664555433211054102899613544-200788987777999863001223122-------- Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC Q ss_conf 656667763125786789977740167666423330256000277743999998776420798289988987622412 Q gi|254780778|r 216 KRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEN 293 (296) Q Consensus 216 Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~ 293 (296) ++.+||+|+|||+||||+||++||++||++. +++|++|+||+|||-. T Consensus 231 -------------------------k~~~~~~E~~Ll~Q~fv~D~~~tV~~~l~~~------~~~V~~F~R~evGEGi 277 (291) T 1xb2_B 231 -------------------------DEPGGEAETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECGEGE 277 (291) T ss_dssp -------------------------SCCCGGGCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETTCC- T ss_pred -------------------------CCCCCHHHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCE T ss_conf -------------------------3543204405458986437970599999967------9989999999526862 No 5 >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Probab=100.00 E-value=0 Score=470.50 Aligned_cols=195 Identities=36% Similarity=0.582 Sum_probs=186.1 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCEEEEEEEE Q ss_conf 9735589999999871999899999999629998999999998238899865103364220000440-788536999984 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARD-GYKKASIVEVNV 79 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~-~~~~a~liEinc 79 (296) ||. +++||+||++||||||||||||.||+||+|+|++|||++|+++|+||++|.|+||+|+++.. +.+.|+|||||| T Consensus 1 ms~--~~lvk~LR~~Tgag~~dcKkAL~e~~gD~~~A~~~Lrk~G~~~A~kk~~r~a~eG~i~~~v~~~~~~~~lvelnc 78 (196) T 1aip_C 1 MSQ--MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNC 78 (196) T ss_dssp -CH--HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEEC T ss_pred CCC--HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC T ss_conf 974--799999999879799999999998489899999999983425778776673215569999963897799999965 Q ss_pred ECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 03101022679999998887531033565778640041000014677899998543431024443102222100000135 Q gi|254780778|r 80 ETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHA 159 (296) Q Consensus 80 ETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~ 159 (296) ||||||||+.|++ T Consensus 79 ETDFVarn~~F~~------------------------------------------------------------------- 91 (196) T 1aip_C 79 ETDFVARNELFQN------------------------------------------------------------------- 91 (196) T ss_dssp SSHHHHTSHHHHH------------------------------------------------------------------- T ss_pred CCCHHHCCCHHHH------------------------------------------------------------------- T ss_conf 8840430730677------------------------------------------------------------------- Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 32346034434443035432157899988565566765433204587836277776656667763125786789977740 Q gi|254780778|r 160 SPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239 (296) Q Consensus 160 ~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~ 239 (296) |+++|||||+|++|.|++.++||++++++|++++..++..+|||++|+++|++ T Consensus 92 ---------------------------la~~iAmhiaa~~P~~~~~~dv~~~~i~~e~~i~~~~~~~~gKp~~i~ekiv~ 144 (196) T 1aip_C 92 ---------------------------LAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAE 144 (196) T ss_dssp ---------------------------HHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH T ss_pred ---------------------------HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC T ss_conf ---------------------------89999999984197658811289999988888999998735880888988843 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 1676664233302560002777439999987764207982899889876224 Q gi|254780778|r 240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 240 Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) ||++|||+|+||++|||++||+.||+++|++..+++|.+|+|++|+||+||- T Consensus 145 Gkl~kf~~e~~Ll~Q~~v~d~~~tV~~~l~~~~~~lGe~I~i~~F~r~~~G~ 196 (196) T 1aip_C 145 GRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 196 (196) T ss_dssp HHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC T ss_conf 7643310123201586306897529999999998608980899999998169 No 6 >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Probab=100.00 E-value=2.5e-42 Score=301.15 Aligned_cols=138 Identities=30% Similarity=0.589 Sum_probs=131.7 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH Q ss_conf 2210000013532346034434443035432---1578999885655667654332045878362777766566677631 Q gi|254780778|r 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL 225 (296) Q Consensus 149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~ 225 (296) .+|++++|+|++ |+|||||.++++++ ..+.+++++++|||||+|++|.||++++||++++++|+++++++++ T Consensus 2 ~~G~v~~YvH~~-----gkigvlv~l~~~~d~~~~~~~~~~~ak~iAMhiaA~~P~~i~~~~vp~~~i~~E~~i~~~~~~ 76 (145) T 1tfe_A 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL 76 (145) T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCC-----CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH T ss_conf 987899998389-----966999999835630110067899999998898705982258666978999989999986765 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) .+|||++|++||++|||+|||+|+||++|+||+||++||++||++.++++|.+|+|++|+||+||- T Consensus 77 ~~gKP~~i~eKIv~Gkl~Kf~~E~~LleQ~fv~d~~~tV~~~l~~~~k~~g~~i~I~~F~Rf~vG~ 142 (145) T 1tfe_A 77 NEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 142 (145) T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC T ss_conf 146819999988521587663340322587404998459999999888608981899999999555 No 7 >2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Probab=99.78 E-value=7.4e-20 Score=151.49 Aligned_cols=59 Identities=29% Similarity=0.317 Sum_probs=57.5 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 73558999999987199989999999962999899999999823889986510336422 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG 60 (296) +.+|+++||+||++||+||+|||+||++++||+|+|++|||++|+++|.||++|.|+|| T Consensus 6 ~~~s~elik~LR~~Tga~~~dcK~AL~e~~gD~ekA~~~Lr~~g~~~a~kKa~r~a~eG 64 (64) T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64) T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 41309999999999798899999999992899999999999998999998703443579 No 8 >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Probab=98.85 E-value=1.2e-09 Score=83.67 Aligned_cols=92 Identities=32% Similarity=0.387 Sum_probs=70.7 Q ss_pred HHHHHHHHEEC-CCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHH-CCCCH-------------------------- Q ss_conf 64220000440-788536999984031010226799999988875310-33565-------------------------- Q gi|254780778|r 57 VSEGLIGIARD-GYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS-TDGSL-------------------------- 108 (296) Q Consensus 57 a~eG~v~~~~~-~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~-~~~~~-------------------------- 108 (296) |.||+|+.|.. +.+.|+|++++|||||+++|+.|.+|+++++..+.. +|..+ T Consensus 1 a~~G~v~~YvH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAMhiaA~~P~~i~~~~vp~~~i~~E~~i~~~~~~~~gK 80 (145) T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (145) T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC T ss_pred CCCCEEEEEECCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC T ss_conf 99878999983899669999998356301100678999999988987059822586669789999899999867651468 Q ss_pred -------------------HHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf -------------------77864004-10000146778999985434310244431022 Q gi|254780778|r 109 -------------------DNVLAMPF-DHSGITVGDGIKQQIAITGECIKLRRSALLCV 148 (296) Q Consensus 109 -------------------~~~~~~~~-~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~ 148 (296) ..++.+++ .+...||++++.+....+|+||.|.+|.+|.. T Consensus 81 P~~i~eKIv~Gkl~Kf~~E~~LleQ~fv~d~~~tV~~~l~~~~k~~g~~i~I~~F~Rf~v 140 (145) T 1tfe_A 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFEL 140 (145) T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEET T ss_pred HHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE T ss_conf 199999885215876633403225874049984599999998886089818999999995 No 9 >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Probab=97.31 E-value=0.00058 Score=45.70 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=78.8 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHH Q ss_conf 343102444310222210000013532346034434443035432---15789998856556676543320458783627 Q gi|254780778|r 135 GECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPS 211 (296) Q Consensus 135 GEnI~l~R~~~~~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~ 211 (296) |....-+|..+ .+.+|.|+.|.. |..|+||++++.++ .++.+..|+++||++++...|...+.-...+. T Consensus 48 G~akA~Kk~~R-~a~EG~v~~~~~-------~~~a~lvElnCETDFVAkn~~F~~fa~~ia~~~~~~~~~~~~~l~~~~~ 119 (291) T 1xb2_B 48 GWSKAARLHGR-KTKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK 119 (291) T ss_dssp HHHHHHHHTTS-CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE T ss_pred HHHHHHHHHCC-CCCCEEEEEECC-------CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 79888876243-524348999517-------8548999997123002245889999999999998605443778754323 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEC Q ss_conf 7776656667763125786789977740167666423330256000277743999998776420798289988987622 Q gi|254780778|r 212 IVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290 (296) Q Consensus 212 ~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lG 290 (296) .. +...-|.+++...++..||.+.+.+....+|.+|.|.+|.+|... T Consensus 120 ~~--------------------------------~~~~~l~~~~~~~~~~~tv~d~i~~~i~kiGEnI~lrR~~~~~~~ 166 (291) T 1xb2_B 120 GF--------------------------------LNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP 166 (291) T ss_dssp EE--------------------------------ECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECC T ss_pred HH--------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC T ss_conf 33--------------------------------324447765303434770999999999872652366667886416 No 10 >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Probab=96.56 E-value=0.0033 Score=40.70 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=35.1 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 3558999999987199989999999962999899999999 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) .++-+.|.+|.++ |..--.|+.||..|+||+|.|++||- T Consensus 27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll 65 (73) T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM 65 (73) T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 8699999999991-89999999999992999999999998 No 11 >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Probab=96.19 E-value=0.0092 Score=37.72 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=35.8 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|.+|-+ -|-+.-.|++||..|+||++.|++||-.. T Consensus 27 ~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~nve~Av~~Ll~~ 67 (73) T 1wiv_A 27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73) T ss_dssp SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 989999999999-69999999999999099999999999808 No 12 >1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=96.05 E-value=0.0064 Score=38.76 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=31.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999871999899999999629998999999998 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) +.|.+|-++ |-+--.|++||..|+||+|.|++||-. T Consensus 10 ~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~Lls 45 (49) T 1ify_A 10 TMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49) T ss_dssp HHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999984-999999999999939999999999983 No 13 >1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Probab=95.89 E-value=0.012 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=30.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999871999899999999629998999999998 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ..+..||++-=.--..|.+||.+++||+++|++||=. T Consensus 19 ~qL~~L~~MGF~d~~~N~~AL~~t~Gnv~~AIe~Ll~ 55 (58) T 1wr1_B 19 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC T ss_conf 9999999959996899999999929999999999973 No 14 >1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Probab=95.86 E-value=0.012 Score=36.90 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=35.8 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999998719998999999996299989999999982 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ..||+|.+.||..--+|-=||-.|++|+..||.+|-+- T Consensus 41 ~kVkql~e~T~rsede~~vALhDcd~D~~~AIn~LLEg 78 (104) T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 99999999967889999998752787699999999954 No 15 >2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=95.63 E-value=0.02 Score=35.42 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=36.4 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 3558999999987199989999999962999899999999823 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) .|....|++|-+ -|-+--.|++||..|++|++.|++||-... T Consensus 27 ~vd~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL~~h~ 68 (83) T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83) T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHGG T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 679999999999-699999999999993999999999999878 No 16 >1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=95.41 E-value=0.025 Score=34.81 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=34.2 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|.+|=+ =|-+-..|++||..|+||++.|++||-.. T Consensus 7 ~vd~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL~~~ 47 (63) T 1wji_A 7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63) T ss_dssp SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 569999999999-69999999999999298999999999988 No 17 >2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=95.15 E-value=0.031 Score=34.19 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=35.1 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ..+...|.+|-++ |-+--.|++||..++||+|.|++||-.. T Consensus 7 ~p~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~ 47 (63) T 2dak_A 7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63) T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9699999999996-9999999999999399999999999988 No 18 >1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis} Probab=94.87 E-value=0.039 Score=33.50 Aligned_cols=39 Identities=31% Similarity=0.321 Sum_probs=36.2 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 355899999998719998999999996299989999999 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) .|+..+|+-.=++||++--..++||.+++||+-.||--| T Consensus 63 ~i~eeDI~lVmeQtgvsr~~A~kAL~e~~GDiaeAIm~L 101 (102) T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102) T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 989899999987609999999999998589599999861 No 19 >1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Probab=94.81 E-value=0.047 Score=33.01 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 8999999987199989999999962999899999999823 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ...+.+||++==.---.|-+||..++||+++||+||...+ T Consensus 30 ~~QL~~L~~MGF~d~~~N~~AL~~~~Gdv~~Ai~~Ll~~~ 69 (74) T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGAS 69 (74) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 9999999994899789999999992998999999999658 No 20 >1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=94.80 E-value=0.029 Score=34.39 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 899999998719998999999996299989999999982 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+.|.+|-++ |-+--.|++||..|+||+|.|++||-.. T Consensus 20 ~~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~ 57 (63) T 1wgn_A 20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63) T ss_dssp HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9999999996-9989999999999099899999999957 No 21 >2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Probab=94.77 E-value=0.056 Score=32.49 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 899999998719998999999996299989999999982 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ...+.+||++==.--..|-+||..++||+++||++|... T Consensus 20 ~~qL~~L~~MGF~d~~~nl~AL~~~~Gdv~~Aie~Ll~~ 58 (67) T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 999999999489869999999999199899999999966 No 22 >2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Probab=94.57 E-value=0.045 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999987199989999999962999899999999 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) ..+.+||++-=.--..|-.||..++||+++||+||- T Consensus 13 ~qL~~L~eMGF~D~~~Nl~AL~~~~Gdv~~Ai~~Ll 48 (53) T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53) T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 999999994999669999999991998999999998 No 23 >2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=93.70 E-value=0.13 Score=30.17 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=36.3 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 7355899999998719998999999996299-989999999982 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) +.+...+|.+|=+ -|-+--.|++||..+++ ++|.|++||-.. T Consensus 6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h 48 (74) T 2dag_A 6 SGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74) T ss_dssp CSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9989999999999-699999999999998699999999999987 No 24 >2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=93.60 E-value=0.13 Score=29.97 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 899999998719998999999996299989999999982 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ...+.+||++==.--..|-.||..++||+++||++|... T Consensus 10 ~~qL~~L~~MGF~d~~~Nl~aL~~~~Gdv~~Aie~Ll~~ 48 (54) T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 999999999499968999999999299899999999846 No 25 >2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Probab=93.34 E-value=0.12 Score=30.18 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 899999998719998999999996299989999999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) ...+.+||++-=.--..|-.||..++||++.||++| T Consensus 13 ~~qL~~L~eMGF~d~~~n~~AL~~~~Gdv~~Ai~~L 48 (52) T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERL 48 (52) T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999499966999999999099899999998 No 26 >2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Probab=93.19 E-value=0.14 Score=29.94 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999987199989999999962999899999999 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) ..+-+||++-=.--..|-.||..++||+++||++|- T Consensus 9 ~QL~~L~~MGF~d~~~Ni~AL~~~~Gdv~~Aie~Ll 44 (46) T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46) T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 999999984999789999999995998999999986 No 27 >2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Probab=93.13 E-value=0.13 Score=30.09 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=29.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 999999987199989999999962999899999999823 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ..+.+||++-=.--..|-+||.+++||++.||++|-..| T Consensus 68 ~QL~qL~eMGF~D~~~Nl~AL~~t~GdV~~AIe~Ll~gg 106 (108) T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108) T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 999999986996589999999992998999999997079 No 28 >1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Probab=92.94 E-value=0.089 Score=31.14 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=33.2 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 355899999998719998999999996299-989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) .+....|++|=+ -|-+--.|++||..+++ ++|.|++||-.. T Consensus 7 ~vd~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h 48 (64) T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64) T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 679999999999-599999999999994799999999999987 No 29 >2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=92.82 E-value=0.091 Score=31.08 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 5899999998719998999999996299-989999999982 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) ....|.+|=++ |-+--.|++||..+++ |+|.|++||-.. T Consensus 19 ~~~~l~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~~Wll~h 58 (64) T 2cpw_A 19 HGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH 58 (64) T ss_dssp CCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC T ss_pred CHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999996-99899999999996599999999999967 No 30 >2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Probab=92.79 E-value=0.082 Score=31.39 Aligned_cols=37 Identities=35% Similarity=0.384 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) .+.|++|=++ |-+--.+++||..++||+|.|.+||=. T Consensus 5 e~av~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~ 41 (43) T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43) T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999985-999999999999819999999999873 No 31 >3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A Probab=92.43 E-value=0.18 Score=29.15 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=20.4 Q ss_pred HHHHHHEECCCCCEEEEEEEEECCHHHC Q ss_conf 2200004407885369999840310102 Q gi|254780778|r 59 EGLIGIARDGYKKASIVEVNVETDSLAK 86 (296) Q Consensus 59 eG~v~~~~~~~~~a~liEincETDFVAk 86 (296) .|.|+.|..+.+.|+|++++++.+-+|| T Consensus 140 ~~~v~~Y~H~~kIgvlV~~~~~~~e~ak 167 (1289) T 3agp_A 140 GDVLGSYQHGARIGVLVAAKGADEELVK 167 (1289) T ss_dssp CSEEEEEEETTTEEEEEEETTCCHHHHH T ss_pred CCEEEEEECCCEEEEEEEECCCCHHHHH T ss_conf 8879999729979999995687599998 No 32 >1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Probab=92.15 E-value=0.1 Score=30.75 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=37.8 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHH Q ss_conf 2222100000135323460344344430354321---578999885655667654332 Q gi|254780778|r 147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPS 201 (296) Q Consensus 147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~ 201 (296) .+.+|.|+.|+.+ ..|+||++.+.++- ++.+..|++++|..+....|. T Consensus 55 ~t~eG~I~~~~~~-------~~~~mvElNCETDFVArNe~F~~l~~~ia~~~l~~~~~ 105 (282) T 1efu_B 55 VAADGVIKTKIDG-------NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKIT 105 (282) T ss_dssp CCCEEEEEEEEET-------TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCC T ss_pred CHHCCCEEEEECC-------CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 1003614676539-------86899999524110106734899999999999845743 No 33 >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Probab=90.75 E-value=0.46 Score=26.38 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=32.3 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH Q ss_conf 5589999999871999899999999629-9989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk 44 (296) +....|.+|=++ |-+--.|++||..++ +|++.|++||-.. T Consensus 28 ~d~~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h 68 (84) T 1vek_A 28 ANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84) T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 999999999995-99999999999998699999999999987 No 34 >1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Probab=90.62 E-value=0.38 Score=26.99 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=31.8 Q ss_pred HHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 9999999871999-8999999996299989999999982 Q gi|254780778|r 7 VAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 7 ~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .++.+||+.||-- ..---+||..++||+..|+-+|-.+ T Consensus 26 ~lLNQLrEITGI~D~q~Lq~ALkas~Gdl~~AV~~LT~~ 64 (80) T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80) T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCC T ss_conf 999999997376849999999980378899999998527 No 35 >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Probab=89.38 E-value=0.099 Score=30.86 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 0146778999985434310244431022221000001353234603443444303543215789998856556676 Q gi|254780778|r 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVM 196 (296) Q Consensus 121 ~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhia 196 (296) ..+...+..+ -+-|-...-+|..+ .+.+|.+++|+|++ +++|++|++.+.++.......| .++|.+|| T Consensus 30 gD~~~A~~~L-rk~G~~~A~kk~~r-~a~eG~i~~~v~~~-----~~~~~lvelncETDFVarn~~F-~~la~~iA 97 (196) T 1aip_C 30 WDEEKAVQLL-RERGAMKAAKKADR-EAREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELF-QNLAKDLA 97 (196) T ss_dssp TCHHHHHHHH-HHHHHHHHHHHTTS-CCCCCEEEEEECTT-----SSEEEEEEEECSSHHHHTSHHH-HHHHHHHH T ss_pred CCHHHHHHHH-HHHCHHHHHHHHHH-HHCCCEEEEEEECC-----CCEEEEEEEECCCCHHHCCCHH-HHHHHHHH T ss_conf 9899999999-98342577877667-32155699999638-----9779999996588404307306-77899999 No 36 >1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Probab=89.33 E-value=0.6 Score=25.62 Aligned_cols=45 Identities=24% Similarity=0.219 Sum_probs=37.5 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 973558999999987199989999999962999899999999823 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) |+.---.+|.+....||+.--.++.-|+.++||++.|+..--..| T Consensus 1 ls~~q~~li~qF~~iTg~~~~~A~~~L~~~~wnle~Ai~~yf~~g 45 (46) T 1v92_A 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46) T ss_dssp CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 973199999999999894999999999996996999999998668 No 37 >1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Probab=86.29 E-value=1.5 Score=22.95 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=34.6 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 58999999987199989999999962999899999999 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) --++|.+|-..||--.-=|.+.|+++++|++.|+.... T Consensus 7 qq~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~ 44 (59) T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999999898899999999985989999999999 No 38 >2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=84.76 E-value=1.3 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999871999899999999629998999999998 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) -+|.+.+..||+.-.--|--|+.||||+|-|+...-. T Consensus 17 gLi~qFtaiTgate~v~khmLEAcn~NLEMAvtM~ld 53 (62) T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHEEEEEC T ss_conf 8999999850408899999999818875422012443 No 39 >2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Probab=84.49 E-value=1.2 Score=23.59 Aligned_cols=41 Identities=15% Similarity=0.006 Sum_probs=36.3 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 35589999999871999899999999629998999999998 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) .+--++|.+|-..||--.-=|.+.|+++++|++.|+..-.+ T Consensus 4 ~~qq~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~~ 44 (57) T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57) T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 89999999999997999999999999869889999999999 No 40 >2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Probab=81.17 E-value=1.7 Score=22.69 Aligned_cols=39 Identities=36% Similarity=0.455 Sum_probs=32.0 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 35589999999871999899999999629998999999998 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) +++++ |..|-. -|.+..|.++||.=+.+|+|-|-.+||+ T Consensus 10 nl~~e-I~~Lm~-~GYs~~dv~rAL~Ia~NniemA~~ILrE 48 (52) T 2ooa_A 10 NVDAK-IAKLMG-EGYAFEEVKRALEIAQNNVEVARSILRE 48 (52) T ss_dssp -CHHH-HHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH T ss_pred CCCHH-HHHHHH-CCCCHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 22179-999998-6655999999999986229999999998 No 41 >2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=79.54 E-value=2.9 Score=21.05 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=28.2 Q ss_pred HHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHH Q ss_conf 999999987199-9899999999629998999999 Q gi|254780778|r 7 VAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDI 40 (296) Q Consensus 7 ~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~ 40 (296) .-+-+..+.||- .|-.|+.-|+..+||+|.|+.- T Consensus 20 eKllqFQdiTGied~~~Cr~iL~~H~WdlE~AVq~ 54 (67) T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67) T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999987107675999999999918859999999 No 42 >2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Probab=79.30 E-value=2.1 Score=22.04 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=32.6 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) +++.+ |..|-. -|.+..|.++||.=+.+|+|-|-.+||+= T Consensus 8 ~~~~e-I~~Lm~-~GYs~~~v~~AL~Ia~NniemA~~ILrEF 47 (53) T 2d9s_A 8 QLSSE-IERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53) T ss_dssp CSHHH-HHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHH T ss_pred HHHHH-HHHHHH-CCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 10189-999998-55449999999999861199999999997 No 43 >2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Probab=78.89 E-value=1.9 Score=22.24 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=27.0 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 19998999999996299989999999982 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) -|.+..|.++||.=+.+|+|-|-.+||+= T Consensus 14 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF 42 (46) T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46) T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 67769999999999862199999999987 No 44 >2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Probab=76.06 E-value=2.4 Score=21.65 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=26.8 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 19998999999996299989999999982 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) -|.+..|.++||.=+.+|+|-|-.+||+= T Consensus 17 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF 45 (56) T 2juj_A 17 QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56) T ss_dssp TTCCHHHHHHHHHHTTTCSHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 55449999999999871199999999998 No 45 >1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Probab=73.63 E-value=3 Score=20.94 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC Q ss_conf 899999998719998999999996299 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKG 32 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~g 32 (296) ...||++|..||.|+++.|+..+.+.. T Consensus 20 i~vIK~VR~itglgLkeAK~lVe~~P~ 46 (74) T 1ctf_A 20 VAVIKAVRGATGLGLKEAKDLVESAPA 46 (74) T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTCSE T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCH T ss_conf 479999987659999999999871889 No 46 >3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* Probab=70.43 E-value=5.7 Score=19.15 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 8999999987199989999999962999899999999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) -+.|++.+..||++=....+.|..+++|+|.|++--= T Consensus 16 k~~i~qF~~~T~ase~~A~~~L~~~~W~le~A~d~yf 52 (270) T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYY 52 (270) T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 9999999988299999999999987998799999998 No 47 >1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1 d.45.1.1 PDB: 1rqv_A 2gya_3 2gyc_3 Probab=52.09 E-value=12 Score=17.01 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99998543431024 Q gi|254780778|r 128 KQQIAITGECIKLR 141 (296) Q Consensus 128 ~~~ia~iGEnI~l~ 141 (296) .+++..+.|...+. T Consensus 20 ~eLv~~le~~fgv~ 33 (120) T 1rqu_A 20 VELISAMEEKFGVS 33 (120) T ss_dssp HHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999994999 No 48 >1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Probab=50.83 E-value=12 Score=16.88 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.0 Q ss_pred CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871-999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) -+-+.++.|+++= +------+--|..++||+|.||+-|-. T Consensus 8 ~~ee~l~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~ 48 (59) T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59) T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 76999999999878777999999999939977999999983 No 49 >2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I Probab=43.89 E-value=8.5 Score=17.98 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99998543431024 Q gi|254780778|r 128 KQQIAITGECIKLR 141 (296) Q Consensus 128 ~~~ia~iGEnI~l~ 141 (296) .+++..+.|...+. T Consensus 21 ~eLv~~leek~gv~ 34 (125) T 2j01_L 21 KQLIDALKEAWGVT 34 (125) T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999997988 No 50 >2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Probab=41.72 E-value=15 Score=16.28 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0146778999985434310244 Q gi|254780778|r 121 ITVGDGIKQQIAITGECIKLRR 142 (296) Q Consensus 121 ~tv~d~i~~~ia~iGEnI~l~R 142 (296) .||++.+ ..|+.+|.|.. T Consensus 32 qtV~~l~----~~Ic~KiGItN 49 (128) T 2kc2_A 32 KTVTDML----MTICARIGITN 49 (128) T ss_dssp SSHHHHH----HHHHHHHTCCC T ss_pred CCHHHHH----HHHHHHHCCCC T ss_conf 2799999----99998658787 No 51 >2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Probab=38.82 E-value=19 Score=15.67 Aligned_cols=40 Identities=10% Similarity=-0.155 Sum_probs=31.7 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) -++++...|+++-=.--.--.+.|.+.+||+.++++-|+. T Consensus 8 q~a~lM~~L~eMGF~drqlN~~LL~KH~~nl~~vV~eLlq 47 (54) T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54) T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 5699999999917652899999999836849999999998 No 52 >2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1 Probab=38.72 E-value=6.3 Score=18.83 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=21.2 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCC Q ss_conf 344344430354321578999885655667654332045878362777766566677631257 Q gi|254780778|r 166 GSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSG 228 (296) Q Consensus 166 GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~g 228 (296) .||.+|-.+..-. + =.+.+ +|++- = .|..| .+.|+.+-- +-++.++.+.| T Consensus 67 ~Ki~vIK~vR~it-~-LgLkE-AK~lV----E-~p~~i-ke~vsKeeA----E~ikkkLe~aG 116 (122) T 2zjq_5 67 SKINVIKEIRGIT-G-LGLKE-AKDMS----E-KGGVL-KEGVAKDEA----EKMKAQLEAAG 116 (122) T ss_pred CCCEEEEHHHHCC-C-CCHHH-HHHHH----H-CCHHH-HCCCCHHHH----HHHHHHHHHCC T ss_conf 7653663025216-9-98899-99886----0-77166-418999999----99999999859 No 53 >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Probab=33.26 E-value=23 Score=15.10 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.7 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 19998999999996299989999999 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) -|-.-.+.-+||..+|||++-|--+| T Consensus 14 mgfdpleaaqaldaangdldvaasfl 39 (40) T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40) T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 17887899988754047578889862 No 54 >3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens} Probab=33.04 E-value=23 Score=15.07 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999987199989999999962999899999999 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) +.|-.|-+.++.-+.++-+||-.++||++++--+|+ T Consensus 15 ~~i~~~MeEF~ldL~tVTqAlLKnSGel~at~~fL~ 50 (111) T 3k6g_A 15 KIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLA 50 (111) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 999999999775099999999972535899999998 No 55 >2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Probab=32.49 E-value=24 Score=15.02 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=7.1 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999985434310244 Q gi|254780778|r 128 KQQIAITGECIKLRR 142 (296) Q Consensus 128 ~~~ia~iGEnI~l~R 142 (296) .+++..+.|...+.. T Consensus 19 ~eL~~~le~k~gv~~ 33 (137) T 2ftc_E 19 SDLNELLKKTLKIQD 33 (137) T ss_pred HHHHHHHHHHHCCCC T ss_conf 999999999969984 No 56 >2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=29.14 E-value=27 Score=14.65 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=26.3 Q ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 89999999871-999899999999629998999999998 Q gi|254780778|r 6 AVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 6 ~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) .+.++.|+++= +------+--|.+++|++|.|++-|-. T Consensus 19 ~~a~~~Lk~mFP~~D~~vI~~VL~a~~g~vd~aidaLL~ 57 (67) T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67) T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999877668999999999919977999999985 No 57 >2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} SCOP: d.58.18.13 Probab=22.58 E-value=25 Score=14.82 Aligned_cols=15 Identities=7% Similarity=-0.261 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 146778999985434 Q gi|254780778|r 122 TVGDGIKQQIAITGE 136 (296) Q Consensus 122 tv~d~i~~~ia~iGE 136 (296) +-+-.+.+++...|- T Consensus 35 a~~pvis~l~~~~~v 49 (100) T 2qsw_A 35 AKLPIISHIVQEYQV 49 (100) T ss_dssp CSSCHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHCC T ss_conf 686599999998598 No 58 >2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1 Probab=21.00 E-value=31 Score=14.25 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=9.7 Q ss_pred CCHHHHHHHHHHH-HH Q ss_conf 9989999999982-38 Q gi|254780778|r 32 GDSELAIDILRTK-GA 46 (296) Q Consensus 32 gD~e~Ai~~LRkk-G~ 46 (296) .|++++++|-++- |. T Consensus 17 ~Dle~s~~FY~~vLG~ 32 (144) T 2c21_A 17 GDLDRSIKFYTERLGM 32 (144) T ss_dssp SCHHHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHHCC T ss_conf 9999999999997497 No 59 >2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A Probab=20.21 E-value=20 Score=15.44 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=8.1 Q ss_pred HHHCCCCCHHHHHHHHHHHHH Q ss_conf 430354321578999885655 Q gi|254780778|r 172 VALQSSAEDKELLSAIGEKIA 192 (296) Q Consensus 172 V~l~~~~~~~~~~~~~ak~iA 192 (296) +.+.-+..+.+...+.++.+| T Consensus 44 iel~i~~~~~e~a~~~~~~~~ 64 (84) T 2dgb_A 44 LEIVFPAENLLEAEEKAKAMG 64 (84) T ss_dssp EEEEEECSSHHHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHH T ss_conf 999985899899999999998 Done!