Query         gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs    132 out of 2145
Neff          6.2 
Searched_HMMs 23785
Date          Mon May 30 13:48:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3agp_A Elongation factor TS, e 100.0       0       0  681.7  19.5  263    1-291     1-263 (1289)
  2 3mmp_A Elongation factor TU 2, 100.0       0       0  649.3  18.0  264    1-292     1-264 (678)
  3 1efu_B Elongation factor TS; c 100.0       0       0  609.8  19.8  264    2-293     1-264 (282)
  4 1xb2_B EF-TS, elongation facto 100.0       0       0  538.7  13.0  251    2-293     1-277 (291)
  5 1aip_C EF-TS, elongation facto 100.0       0       0  470.5  18.7  195    1-291     1-196 (196)
  6 1tfe_A Elongation factor TS; 1 100.0 2.5E-42       0  301.2   9.4  138  149-291     2-142 (145)
  7 2cp9_A EF-TS, EF-TSMT, elongat  99.8 7.4E-20 3.1E-24  151.5   4.3   59    2-60      6-64  (64)
  8 1tfe_A Elongation factor TS; 1  98.9 1.2E-09 4.8E-14   83.7   3.6   92   57-148     1-140 (145)
  9 1xb2_B EF-TS, elongation facto  97.3 0.00058 2.4E-08   45.7   6.8  116  135-290    48-166 (291)
 10 1vg5_A RSGI RUH-014, rhomboid   96.6  0.0033 1.4E-07   40.7   5.3   39    3-42     27-65  (73)
 11 1wiv_A UBP14, ubiquitin-specif  96.2  0.0092 3.9E-07   37.7   5.9   41    3-44     27-67  (73)
 12 1ify_A HHR23A, UV excision rep  96.0  0.0064 2.7E-07   38.8   4.5   36    7-43     10-45  (49)
 13 1wr1_B Ubiquitin-like protein   95.9   0.012 5.2E-07   36.8   5.4   37    7-43     19-55  (58)
 14 1wj7_A Hypothetical protein (R  95.9   0.012 5.1E-07   36.9   5.3   38    7-44     41-78  (104)
 15 2dai_A Ubadc1, ubiquitin assoc  95.6    0.02 8.5E-07   35.4   5.7   42    3-45     27-68  (83)
 16 1wji_A Tudor domain containing  95.4   0.025 1.1E-06   34.8   5.5   41    3-44      7-47  (63)
 17 2dak_A Ubiquitin carboxyl-term  95.1   0.031 1.3E-06   34.2   5.3   41    3-44      7-47  (63)
 18 1tr8_A Conserved protein (MTH1  94.9   0.039 1.7E-06   33.5   5.2   39    3-41     63-101 (102)
 19 1vej_A Riken cDNA 4931431F19;   94.8   0.047   2E-06   33.0   5.4   40    6-45     30-69  (74)
 20 1wgn_A UBAP1, ubiquitin associ  94.8   0.029 1.2E-06   34.4   4.4   38    6-44     20-57  (63)
 21 2dna_A Unnamed protein product  94.8   0.056 2.4E-06   32.5   5.8   39    6-44     20-58  (67)
 22 2knz_A Ubiquilin-4; cytoplasm,  94.6   0.045 1.9E-06   33.1   4.9   36    7-42     13-48  (53)
 23 2dag_A Ubiquitin carboxyl-term  93.7    0.13 5.3E-06   30.2   5.7   42    2-44      6-48  (74)
 24 2dah_A Ubiquilin-3; UBA domain  93.6    0.13 5.6E-06   30.0   5.7   39    6-44     10-48  (54)
 25 2jy5_A Ubiquilin-1; UBA, alter  93.3    0.12 5.2E-06   30.2   5.2   36    6-41     13-48  (52)
 26 2bwb_A Ubiquitin-like protein   93.2    0.14 5.7E-06   29.9   5.2   36    7-42      9-44  (46)
 27 2cwb_A Chimera of immunoglobul  93.1    0.13 5.4E-06   30.1   5.0   39    7-45     68-106 (108)
 28 1whc_A RSGI RUH-027, UBA/UBX 3  92.9   0.089 3.8E-06   31.1   4.0   41    3-44      7-48  (64)
 29 2cpw_A CBL-interacting protein  92.8   0.091 3.8E-06   31.1   3.9   39    5-44     19-58  (64)
 30 2g3q_A Protein YBL047C; endocy  92.8   0.082 3.5E-06   31.4   3.6   37    6-43      5-41  (43)
 31 3agp_A Elongation factor TS, e  92.4    0.18 7.5E-06   29.2   5.0   28   59-86    140-167 (1289)
 32 1efu_B Elongation factor TS; c  92.1     0.1 4.3E-06   30.8   3.4   48  147-201    55-105 (282)
 33 1vek_A UBP14, ubiquitin-specif  90.7    0.46   2E-05   26.4   5.6   40    4-44     28-68  (84)
 34 1vdl_A Ubiquitin carboxyl-term  90.6    0.38 1.6E-05   27.0   5.1   38    7-44     26-64  (80)
 35 1aip_C EF-TS, elongation facto  89.4   0.099 4.1E-06   30.9   1.3   68  121-196    30-97  (196)
 36 1v92_A NSFL1 cofactor P47; 3-h  89.3     0.6 2.5E-05   25.6   5.3   45    1-45      1-45  (46)
 37 1oai_A Nuclear RNA export fact  86.3     1.5 6.4E-05   23.0   5.8   38    5-42      7-44  (59)
 38 2dal_A Protein KIAA0794; FAS a  84.8     1.3 5.3E-05   23.5   4.8   37    7-43     17-53  (62)
 39 2jp7_A MRNA export factor MEX6  84.5     1.2 5.1E-05   23.6   4.6   41    3-43      4-44  (57)
 40 2ooa_A E3 ubiquitin-protein li  81.2     1.7   7E-05   22.7   4.2   39    3-43     10-48  (52)
 41 2dam_A ETEA protein; KIAA0887,  79.5     2.9 0.00012   21.0   5.0   34    7-40     20-54  (67)
 42 2d9s_A CBL E3 ubiquitin protei  79.3     2.1 8.8E-05   22.0   4.2   40    3-44      8-47  (53)
 43 2oo9_A E3 ubiquitin-protein li  78.9     1.9 8.2E-05   22.2   4.0   29   16-44     14-42  (46)
 44 2juj_A E3 ubiquitin-protein li  76.1     2.4  0.0001   21.6   3.8   29   16-44     17-45  (56)
 45 1ctf_A Ribosomal protein L7/L1  73.6       3 0.00013   20.9   3.8   27    6-32     20-46  (74)
 46 3bq3_A Defective in cullin ned  70.4     5.7 0.00024   19.1   5.0   37    6-42     16-52  (270)
 47 1rqu_A L8, 50S ribosomal prote  52.1      12  0.0005   17.0   3.6   14  128-141    20-33  (120)
 48 1wgl_A TOLL-interacting protei  50.8      12 0.00052   16.9   4.8   40    4-43      8-48  (59)
 49 2j01_L 50S ribosomal protein L  43.9     8.5 0.00036   18.0   1.7   14  128-141    21-34  (125)
 50 2kc2_A Talin-1, F1; FERM, adhe  41.7      15 0.00064   16.3   2.7   18  121-142    32-49  (128)
 51 2cp8_A NEXT to BRCA1 gene 1 pr  38.8      19 0.00079   15.7   5.0   40    4-43      8-47  (54)
 52 2zjq_5 50S ribosomal protein L  38.7     6.3 0.00027   18.8   0.4   50  166-228    67-116 (122)
 53 1z96_A DNA-damage, UBA-domain   33.3      23 0.00097   15.1   3.9   26   16-41     14-39  (40)
 54 3k6g_A Telomeric repeat-bindin  33.0      23 0.00097   15.1   5.8   36    7-42     15-50  (111)
 55 2ftc_E Mitochondrial ribosomal  32.5      24 0.00099   15.0   5.2   15  128-142    19-33  (137)
 56 2dhy_A CUE domain-containing p  29.1      27  0.0011   14.6   5.1   38    6-43     19-57  (67)
 57 2qsw_A Methionine import ATP-b  22.6      25  0.0011   14.8   1.2   15  122-136    35-49  (100)
 58 2c21_A Trypanothione-dependent  21.0      31  0.0013   14.2   1.4   15   32-46     17-32  (144)
 59 2dgb_A Hypothetical protein PU  20.2      20 0.00086   15.4   0.3   21  172-192    44-64  (84)

No 1  
>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A
Probab=100.00  E-value=0  Score=681.71  Aligned_cols=263  Identities=40%  Similarity=0.590  Sum_probs=247.0

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE
Q ss_conf             97355899999998719998999999996299989999999982388998651033642200004407885369999840
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE   80 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE   80 (296)
                      ||+|||++||+||++||||||||||||+|++||+|+|++|||+||+++|+||++|.|+||+|+++.++ +.|+|+|||||
T Consensus         1 Ma~ITA~~VKeLRe~TGAGMMDCKkAL~E~~GD~ekAie~LRkkG~a~AaKKa~R~aaEGli~~~~~~-~~~~lvEvN~E   79 (1289)
T 3agp_A            1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ   79 (1289)
T ss_dssp             -CCSCHHHHHHHHHHHCCCSHHHHHHHHTTTSCHHHHHHHHHHTTHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC
T ss_conf             98548999999998749948899999877588899999999986358777646610027549999739-87999999767


Q ss_pred             CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf             31010226799999988875310335657786400410000146778999985434310244431022221000001353
Q gi|254780778|r   81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS  160 (296)
Q Consensus        81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~  160 (296)
                      |||||||+.|++|++++++.++.++.+..+.+.       .|++|.+.+++++|||||+|||+.++  +++++++|+|+ 
T Consensus        80 TDFVAkne~F~~l~~~i~~~~~~~~~~~~e~l~-------~~~~e~~~~~ia~iGEni~lrR~~~~--~~~~v~~Y~H~-  149 (1289)
T 3agp_A           80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK-------AQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG-  149 (1289)
T ss_dssp             CHHHHTCHHHHHHHHHHHHHHHHTTCCSHHHHH-------HHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC-
T ss_conf             664227827999999999999855988899987-------07999999998760687799889997--28879999729-


Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             23460344344430354321578999885655667654332045878362777766566677631257867899777401
Q gi|254780778|r  161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG  240 (296)
Q Consensus       161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G  240 (296)
                           |||||||++++.++      +++|+||||||||+|.||++++||++++++|++|+++|++++|||++|++|||+|
T Consensus       150 -----~kIgvlV~~~~~~~------e~akdiAMhIAA~~P~~ls~~~vp~~vve~Er~i~~~qa~~~GKPe~I~eKIveG  218 (1289)
T 3agp_A          150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG  218 (1289)
T ss_dssp             -----TTEEEEEEETTCCH------HHHHHHHHHHHTTCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             -----CEEEEEEEECCCCH------HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             -----97999999568759------9998899999853873188156999999999999999998739979999999878


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             676664233302560002777439999987764207982899889876224
Q gi|254780778|r  241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
                      ||+|||+|+|||+|+||+||++||++||++.      +.+|++|+||+|||
T Consensus       219 rl~kf~~E~~Ll~Q~fVkD~~~tV~~~l~~~------~~~v~~F~R~evGE  263 (1289)
T 3agp_A          219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGE  263 (1289)
T ss_dssp             HHHHHHHHTBGGGSBCTTSTTSBHHHHHHHT------TCCCCEEEEEETTT
T ss_pred             HHHHHHHHHEECCCCEEECCCCCHHHHHHHC------CCEEEEEEEEEECC
T ss_conf             8887745632136850327963199999867------99799999997448


No 2  
>3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli}
Probab=100.00  E-value=0  Score=649.29  Aligned_cols=264  Identities=39%  Similarity=0.586  Sum_probs=247.4

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE
Q ss_conf             97355899999998719998999999996299989999999982388998651033642200004407885369999840
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE   80 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE   80 (296)
                      ||+|||++||+||++||||||||||||+|++||+|+|++||||+|+++|+||++|.|+||+|+++.++ +.|+|+|||||
T Consensus         1 m~~ita~~vk~LR~~Tg~g~~~ckkAL~e~~gd~e~A~~~Lr~~G~~~a~k~~~r~~~eG~i~~~~~~-~~~~~velncE   79 (678)
T 3mmp_A            1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ   79 (678)
T ss_dssp             ---CCHHHHHHHHHHHCCCHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC
T ss_conf             98668999999998869849999999988699899999999996689888645964357589999759-99999999813


Q ss_pred             CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf             31010226799999988875310335657786400410000146778999985434310244431022221000001353
Q gi|254780778|r   81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS  160 (296)
Q Consensus        81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~  160 (296)
                      |||||||+.|++|++.+++.++.++.+..+.+       ..+++|.+.++++++||||+|+|+..+  +++++++|.|+ 
T Consensus        80 TDFVarn~~F~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~i~~igEni~l~r~~~~--~~~~~~~y~h~-  149 (678)
T 3mmp_A           80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVL-------KAQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG-  149 (678)
T ss_dssp             CHHHHHCHHHHHHHHHHHHHHHHTTCCCHHHH-------HHHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC-
T ss_conf             74650885799999999999974698778988-------606888999998861761899579986--18767999739-


Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             23460344344430354321578999885655667654332045878362777766566677631257867899777401
Q gi|254780778|r  161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG  240 (296)
Q Consensus       161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G  240 (296)
                           |+||+||++++.+.      +++|+||||||||+|.||++++||++++++|++++++++.++|||++|++||++|
T Consensus       150 -----~kig~lv~~~~~~~------~~~k~iamhiaa~~P~~~~~~~v~~~~i~~e~~i~~~~~~~~gKp~~i~ekiv~G  218 (678)
T 3mmp_A          150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG  218 (678)
T ss_dssp             -----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCTTTSTTHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             -----CEEEEEEEECCCCH------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             -----84999999558859------9987556886143877244134987888889999999998759968999876430


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf             6766642333025600027774399999877642079828998898762241
Q gi|254780778|r  241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE  292 (296)
Q Consensus       241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~  292 (296)
                      ||+|||+|+|||+||||+||++||++||+++      +++|++|+||+|||.
T Consensus       219 kl~kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~------~~~i~~f~R~~vGe~  264 (678)
T 3mmp_A          219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEG  264 (678)
T ss_dssp             HHHHHHHHTBGGGSEETTEEEEEHHHHHHHT------TCEEEEEEEEETTTT
T ss_pred             HHHHHHHHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCC
T ss_conf             0211234414256851259963699999877------998989999973684


No 3  
>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00  E-value=0  Score=609.77  Aligned_cols=264  Identities=37%  Similarity=0.529  Sum_probs=245.4

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEC
Q ss_conf             73558999999987199989999999962999899999999823889986510336422000044078853699998403
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVET   81 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincET   81 (296)
                      |+||+++||+||++||||||||||||++++||+|+|++|||++||++|+|+++|.|+||+|+++.++ +.|+|+||||||
T Consensus         1 a~ita~lik~LR~~Tga~~~~CKkAL~~~~gD~e~A~~~LrkkG~~kA~K~~~R~t~eG~I~~~~~~-~~~~mvElNCET   79 (282)
T 1efu_B            1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQT   79 (282)
T ss_dssp             CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEESC
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCHHCCCEEEEECC-CEEEEEEEECCC
T ss_conf             9778999999998869869999999998589899999999996779988762701003614676539-868999995241


Q ss_pred             CHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf             10102267999999888753103356577864004100001467789999854343102444310222210000013532
Q gi|254780778|r   82 DSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASP  161 (296)
Q Consensus        82 DFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~  161 (296)
                      ||||||+.|++|+++++++++.++.+...       ..+.++.+.+.+++++|||||.|+|+.++..+   +++|.|++ 
T Consensus        80 DFVArNe~F~~l~~~ia~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~igEni~l~r~~~~~~~---~~~y~h~~-  148 (282)
T 1efu_B           80 DFVAKDAGFQAFADKVLDAAVAGKITDVE-------VLKAQFEEERVALVAKIGENINIRRVAALEGD---VLGSYQHG-  148 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHHCSCCEEEEEEEEECS---EEEEEEET-
T ss_pred             CCHHCCHHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC---CCEEEECC-
T ss_conf             10106734899999999999845743100-------01123677899999873642245226787415---43033126-


Q ss_pred             CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             34603443444303543215789998856556676543320458783627777665666776312578678997774016
Q gi|254780778|r  162 SEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK  241 (296)
Q Consensus       162 ~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gk  241 (296)
                          +++|+++.+++...      ++++++||||+|++|.|++++++|++++++|++++..|+..+|||++|++||++||
T Consensus       149 ----~kig~lv~~~~~~~------~~~k~iamhiaa~~P~~l~~~~v~~~~i~~E~~i~~~q~~~~gKP~~i~ekii~Gk  218 (282)
T 1efu_B          149 ----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR  218 (282)
T ss_dssp             ----TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ----CCEEEEEECCCCHH------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
T ss_conf             ----52356640442189------99988876551258620244445088898888889999997599745564212104


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf             7666423330256000277743999998776420798289988987622412
Q gi|254780778|r  242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEN  293 (296)
Q Consensus       242 l~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~  293 (296)
                      ++|||+|+|||+||||+||++||++||++.      +++|++|+||+|||..
T Consensus       219 l~k~~~E~~LleQ~fv~D~~~tV~~~L~~~------~~~V~~F~R~evGEgi  264 (282)
T 1efu_B          219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGI  264 (282)
T ss_dssp             HHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTS
T ss_pred             HHHHHHHHEEECCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCE
T ss_conf             665542312313761079820599999976------9979899999727863


No 4  
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00  E-value=0  Score=538.67  Aligned_cols=251  Identities=30%  Similarity=0.437  Sum_probs=216.8

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEE
Q ss_conf             7355899999998719998999999996299989999999982----388998651033642200004407885369999
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK----GAMAASKREGRKVSEGLIGIARDGYKKASIVEV   77 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk----G~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEi   77 (296)
                      |.+|+++||+||++||||||||||||+||+||+|+|++|||++    |+++|+||++|.|+||+|+++.++ +.++||||
T Consensus         1 ~a~s~~lIK~LR~~TgagmmdCKkAL~e~~gD~ekAie~LRkk~~~~G~akA~Kk~~R~a~EG~v~~~~~~-~~a~lvEl   79 (291)
T 1xb2_B            1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEV   79 (291)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CEEEEEEE
T ss_conf             93569999999988698699999999985998999999999851565798888762435243489995178-54899999


Q ss_pred             EEECCHHHCCHHHHHHHHHHHHHHHHCCCC--------------HHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             840310102267999999888753103356--------------57786400-410000146778999985434310244
Q gi|254780778|r   78 NVETDSLAKNTDFQSLVSNIAGIALSTDGS--------------LDNVLAMP-FDHSGITVGDGIKQQIAITGECIKLRR  142 (296)
Q Consensus        78 ncETDFVAkn~~F~~l~~~i~~~~l~~~~~--------------~~~~~~~~-~~~~~~tv~d~i~~~ia~iGEnI~l~R  142 (296)
                      ||||||||||+.|++|+++++..++.+..+              ...+..++ ....+.||+|.+.+++++|||||+|||
T Consensus        80 nCETDFVAkn~~F~~fa~~ia~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~tv~d~i~~~i~kiGEnI~lrR  159 (291)
T 1xb2_B           80 NCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKR  159 (291)
T ss_dssp             EESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEE
T ss_pred             EECCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             71230022458899999999999986054437787543233332444776530343477099999999987265236666


Q ss_pred             HHHCCCCCC-CEEEECCCCCCCC------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHH
Q ss_conf             431022221-0000013532346------034434443035432157899988565566765433204587836277776
Q gi|254780778|r  143 SALLCVSEG-VISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVAN  215 (296)
Q Consensus       143 ~~~~~~~~~-~v~~Y~H~~~~~~------~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~  215 (296)
                      +.+++.+.+ ++++|+|++...+      +|++|++|.++.+.. ...+.+++++||||++|++|.++++.+        
T Consensus       160 ~~~~~~~~g~~vg~Y~H~~~~~~~~~~~~~gk~~a~v~~~~~~~-~~~~~~~~k~ia~~i~a~~p~~i~~~~--------  230 (291)
T 1xb2_B          160 AAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL-KANLADLGRRLGQHVVGMAPLSVGSLD--------  230 (291)
T ss_dssp             EEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC-GGGCHHHHHHHHHHHHHHCCSBCCCTT--------
T ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCCCHHH--------
T ss_conf             78864167850444652664555433211054102899613544-200788987777999863001223122--------


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf             656667763125786789977740167666423330256000277743999998776420798289988987622412
Q gi|254780778|r  216 KRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEN  293 (296)
Q Consensus       216 Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~~  293 (296)
                                               ++.+||+|+|||+||||+||++||++||++.      +++|++|+||+|||-.
T Consensus       231 -------------------------k~~~~~~E~~Ll~Q~fv~D~~~tV~~~l~~~------~~~V~~F~R~evGEGi  277 (291)
T 1xb2_B          231 -------------------------DEPGGEAETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECGEGE  277 (291)
T ss_dssp             -------------------------SCCCGGGCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETTCC-
T ss_pred             -------------------------CCCCCHHHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEECCCCE
T ss_conf             -------------------------3543204405458986437970599999967------9989999999526862


No 5  
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00  E-value=0  Score=470.50  Aligned_cols=195  Identities=36%  Similarity=0.582  Sum_probs=186.1

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCEEEEEEEE
Q ss_conf             9735589999999871999899999999629998999999998238899865103364220000440-788536999984
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARD-GYKKASIVEVNV   79 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~-~~~~a~liEinc   79 (296)
                      ||.  +++||+||++||||||||||||.||+||+|+|++|||++|+++|+||++|.|+||+|+++.. +.+.|+||||||
T Consensus         1 ms~--~~lvk~LR~~Tgag~~dcKkAL~e~~gD~~~A~~~Lrk~G~~~A~kk~~r~a~eG~i~~~v~~~~~~~~lvelnc   78 (196)
T 1aip_C            1 MSQ--MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNC   78 (196)
T ss_dssp             -CH--HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEEC
T ss_pred             CCC--HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf             974--799999999879799999999998489899999999983425778776673215569999963897799999965


Q ss_pred             ECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             03101022679999998887531033565778640041000014677899998543431024443102222100000135
Q gi|254780778|r   80 ETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHA  159 (296)
Q Consensus        80 ETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~  159 (296)
                      ||||||||+.|++                                                                   
T Consensus        79 ETDFVarn~~F~~-------------------------------------------------------------------   91 (196)
T 1aip_C           79 ETDFVARNELFQN-------------------------------------------------------------------   91 (196)
T ss_dssp             SSHHHHTSHHHHH-------------------------------------------------------------------
T ss_pred             CCCHHHCCCHHHH-------------------------------------------------------------------
T ss_conf             8840430730677-------------------------------------------------------------------


Q ss_pred             CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             32346034434443035432157899988565566765433204587836277776656667763125786789977740
Q gi|254780778|r  160 SPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN  239 (296)
Q Consensus       160 ~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~  239 (296)
                                                 |+++|||||+|++|.|++.++||++++++|++++..++..+|||++|+++|++
T Consensus        92 ---------------------------la~~iAmhiaa~~P~~~~~~dv~~~~i~~e~~i~~~~~~~~gKp~~i~ekiv~  144 (196)
T 1aip_C           92 ---------------------------LAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAE  144 (196)
T ss_dssp             ---------------------------HHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             ---------------------------89999999984197658811289999988888999998735880888988843


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             1676664233302560002777439999987764207982899889876224
Q gi|254780778|r  240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       240 Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
                      ||++|||+|+||++|||++||+.||+++|++..+++|.+|+|++|+||+||-
T Consensus       145 Gkl~kf~~e~~Ll~Q~~v~d~~~tV~~~l~~~~~~lGe~I~i~~F~r~~~G~  196 (196)
T 1aip_C          145 GRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA  196 (196)
T ss_dssp             HHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
T ss_conf             7643310123201586306897529999999998608980899999998169


No 6  
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=100.00  E-value=2.5e-42  Score=301.15  Aligned_cols=138  Identities=30%  Similarity=0.589  Sum_probs=131.7

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             2210000013532346034434443035432---1578999885655667654332045878362777766566677631
Q gi|254780778|r  149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL  225 (296)
Q Consensus       149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~  225 (296)
                      .+|++++|+|++     |+|||||.++++++   ..+.+++++++|||||+|++|.||++++||++++++|+++++++++
T Consensus         2 ~~G~v~~YvH~~-----gkigvlv~l~~~~d~~~~~~~~~~~ak~iAMhiaA~~P~~i~~~~vp~~~i~~E~~i~~~~~~   76 (145)
T 1tfe_A            2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL   76 (145)
T ss_dssp             CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCC-----CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             987899998389-----966999999835630110067899999998898705982258666978999989999986765


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             257867899777401676664233302560002777439999987764207982899889876224
Q gi|254780778|r  226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
                      .+|||++|++||++|||+|||+|+||++|+||+||++||++||++.++++|.+|+|++|+||+||-
T Consensus        77 ~~gKP~~i~eKIv~Gkl~Kf~~E~~LleQ~fv~d~~~tV~~~l~~~~k~~g~~i~I~~F~Rf~vG~  142 (145)
T 1tfe_A           77 NEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA  142 (145)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf             146819999988521587663340322587404998459999999888608981899999999555


No 7  
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.78  E-value=7.4e-20  Score=151.49  Aligned_cols=59  Identities=29%  Similarity=0.317  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             73558999999987199989999999962999899999999823889986510336422
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG   60 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG   60 (296)
                      +.+|+++||+||++||+||+|||+||++++||+|+|++|||++|+++|.||++|.|+||
T Consensus         6 ~~~s~elik~LR~~Tga~~~dcK~AL~e~~gD~ekA~~~Lr~~g~~~a~kKa~r~a~eG   64 (64)
T 2cp9_A            6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG   64 (64)
T ss_dssp             SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             41309999999999798899999999992899999999999998999998703443579


No 8  
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=98.85  E-value=1.2e-09  Score=83.67  Aligned_cols=92  Identities=32%  Similarity=0.387  Sum_probs=70.7

Q ss_pred             HHHHHHHHEEC-CCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHH-CCCCH--------------------------
Q ss_conf             64220000440-788536999984031010226799999988875310-33565--------------------------
Q gi|254780778|r   57 VSEGLIGIARD-GYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS-TDGSL--------------------------  108 (296)
Q Consensus        57 a~eG~v~~~~~-~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~-~~~~~--------------------------  108 (296)
                      |.||+|+.|.. +.+.|+|++++|||||+++|+.|.+|+++++..+.. +|..+                          
T Consensus         1 a~~G~v~~YvH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAMhiaA~~P~~i~~~~vp~~~i~~E~~i~~~~~~~~gK   80 (145)
T 1tfe_A            1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK   80 (145)
T ss_dssp             CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             99878999983899669999998356301100678999999988987059822586669789999899999867651468


Q ss_pred             -------------------HHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -------------------77864004-10000146778999985434310244431022
Q gi|254780778|r  109 -------------------DNVLAMPF-DHSGITVGDGIKQQIAITGECIKLRRSALLCV  148 (296)
Q Consensus       109 -------------------~~~~~~~~-~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~  148 (296)
                                         ..++.+++ .+...||++++.+....+|+||.|.+|.+|..
T Consensus        81 P~~i~eKIv~Gkl~Kf~~E~~LleQ~fv~d~~~tV~~~l~~~~k~~g~~i~I~~F~Rf~v  140 (145)
T 1tfe_A           81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFEL  140 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             199999885215876633403225874049984599999998886089818999999995


No 9  
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=97.31  E-value=0.00058  Score=45.70  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHH
Q ss_conf             343102444310222210000013532346034434443035432---15789998856556676543320458783627
Q gi|254780778|r  135 GECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPS  211 (296)
Q Consensus       135 GEnI~l~R~~~~~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~  211 (296)
                      |....-+|..+ .+.+|.|+.|..       |..|+||++++.++   .++.+..|+++||++++...|...+.-...+.
T Consensus        48 G~akA~Kk~~R-~a~EG~v~~~~~-------~~~a~lvElnCETDFVAkn~~F~~fa~~ia~~~~~~~~~~~~~l~~~~~  119 (291)
T 1xb2_B           48 GWSKAARLHGR-KTKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK  119 (291)
T ss_dssp             HHHHHHHHTTS-CCCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE
T ss_pred             HHHHHHHHHCC-CCCCEEEEEECC-------CCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             79888876243-524348999517-------8548999997123002245889999999999998605443778754323


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEC
Q ss_conf             7776656667763125786789977740167666423330256000277743999998776420798289988987622
Q gi|254780778|r  212 IVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG  290 (296)
Q Consensus       212 ~i~~Ek~i~~~~~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lG  290 (296)
                      ..                                +...-|.+++...++..||.+.+.+....+|.+|.|.+|.+|...
T Consensus       120 ~~--------------------------------~~~~~l~~~~~~~~~~~tv~d~i~~~i~kiGEnI~lrR~~~~~~~  166 (291)
T 1xb2_B          120 GF--------------------------------LNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP  166 (291)
T ss_dssp             EE--------------------------------ECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECC
T ss_pred             HH--------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf             33--------------------------------324447765303434770999999999872652366667886416


No 10 
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.56  E-value=0.0033  Score=40.70  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             3558999999987199989999999962999899999999
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      .++-+.|.+|.++ |..--.|+.||..|+||+|.|++||-
T Consensus        27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll   65 (73)
T 1vg5_A           27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM   65 (73)
T ss_dssp             CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             8699999999991-89999999999992999999999998


No 11 
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.19  E-value=0.0092  Score=37.72  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+....|.+|-+ -|-+.-.|++||..|+||++.|++||-..
T Consensus        27 ~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~nve~Av~~Ll~~   67 (73)
T 1wiv_A           27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             989999999999-69999999999999099999999999808


No 12 
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.05  E-value=0.0064  Score=38.76  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999871999899999999629998999999998
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      +.|.+|-++ |-+--.|++||..|+||+|.|++||-.
T Consensus        10 ~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~Lls   45 (49)
T 1ify_A           10 TMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999984-999999999999939999999999983


No 13 
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.89  E-value=0.012  Score=36.85  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999871999899999999629998999999998
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      ..+..||++-=.--..|.+||.+++||+++|++||=.
T Consensus        19 ~qL~~L~~MGF~d~~~N~~AL~~t~Gnv~~AIe~Ll~   55 (58)
T 1wr1_B           19 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             9999999959996899999999929999999999973


No 14 
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.86  E-value=0.012  Score=36.90  Aligned_cols=38  Identities=34%  Similarity=0.434  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999998719998999999996299989999999982
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ..||+|.+.||..--+|-=||-.|++|+..||.+|-+-
T Consensus        41 ~kVkql~e~T~rsede~~vALhDcd~D~~~AIn~LLEg   78 (104)
T 1wj7_A           41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG   78 (104)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             99999999967889999998752787699999999954


No 15 
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.63  E-value=0.02  Score=35.42  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             3558999999987199989999999962999899999999823
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      .|....|++|-+ -|-+--.|++||..|++|++.|++||-...
T Consensus        27 ~vd~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL~~h~   68 (83)
T 2dai_A           27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEHA   68 (83)
T ss_dssp             SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             679999999999-699999999999993999999999999878


No 16 
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.41  E-value=0.025  Score=34.81  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+....|.+|=+ =|-+-..|++||..|+||++.|++||-..
T Consensus         7 ~vd~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T 1wji_A            7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             569999999999-69999999999999298999999999988


No 17 
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15  E-value=0.031  Score=34.19  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ..+...|.+|-++ |-+--.|++||..++||+|.|++||-..
T Consensus         7 ~p~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T 2dak_A            7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH   47 (63)
T ss_dssp             CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             9699999999996-9999999999999399999999999988


No 18 
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome, UBA-domain, ubiquitin; 2.27A {Methanothermobacter marburgensis}
Probab=94.87  E-value=0.039  Score=33.50  Aligned_cols=39  Identities=31%  Similarity=0.321  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      .|+..+|+-.=++||++--..++||.+++||+-.||--|
T Consensus        63 ~i~eeDI~lVmeQtgvsr~~A~kAL~e~~GDiaeAIm~L  101 (102)
T 1tr8_A           63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             989899999987609999999999998589599999861


No 19 
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.81  E-value=0.047  Score=33.01  Aligned_cols=40  Identities=25%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8999999987199989999999962999899999999823
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      ...+.+||++==.---.|-+||..++||+++||+||...+
T Consensus        30 ~~QL~~L~~MGF~d~~~N~~AL~~~~Gdv~~Ai~~Ll~~~   69 (74)
T 1vej_A           30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGAS   69 (74)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             9999999994899789999999992998999999999658


No 20 
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.80  E-value=0.029  Score=34.39  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             899999998719998999999996299989999999982
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+.|.+|-++ |-+--.|++||..|+||+|.|++||-..
T Consensus        20 ~~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T 1wgn_A           20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             9999999996-9989999999999099899999999957


No 21 
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.77  E-value=0.056  Score=32.49  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             899999998719998999999996299989999999982
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ...+.+||++==.--..|-+||..++||+++||++|...
T Consensus        20 ~~qL~~L~~MGF~d~~~nl~AL~~~~Gdv~~Aie~Ll~~   58 (67)
T 2dna_A           20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   58 (67)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             999999999489869999999999199899999999966


No 22 
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=94.57  E-value=0.045  Score=33.14  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999987199989999999962999899999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      ..+.+||++-=.--..|-.||..++||+++||+||-
T Consensus        13 ~qL~~L~eMGF~D~~~Nl~AL~~~~Gdv~~Ai~~Ll   48 (53)
T 2knz_A           13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLL   48 (53)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999994999669999999991998999999998


No 23 
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.70  E-value=0.13  Score=30.17  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             7355899999998719998999999996299-989999999982
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK   44 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk   44 (296)
                      +.+...+|.+|=+ -|-+--.|++||..+++ ++|.|++||-..
T Consensus         6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   48 (74)
T 2dag_A            6 SGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH   48 (74)
T ss_dssp             CSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             9989999999999-699999999999998699999999999987


No 24 
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.60  E-value=0.13  Score=29.97  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             899999998719998999999996299989999999982
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ...+.+||++==.--..|-.||..++||+++||++|...
T Consensus        10 ~~qL~~L~~MGF~d~~~Nl~aL~~~~Gdv~~Aie~Ll~~   48 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             999999999499968999999999299899999999846


No 25 
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=93.34  E-value=0.12  Score=30.18  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             899999998719998999999996299989999999
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      ...+.+||++-=.--..|-.||..++||++.||++|
T Consensus        13 ~~qL~~L~eMGF~d~~~n~~AL~~~~Gdv~~Ai~~L   48 (52)
T 2jy5_A           13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERL   48 (52)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999999999499966999999999099899999998


No 26 
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.19  E-value=0.14  Score=29.94  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999987199989999999962999899999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      ..+-+||++-=.--..|-.||..++||+++||++|-
T Consensus         9 ~QL~~L~~MGF~d~~~Ni~AL~~~~Gdv~~Aie~Ll   44 (46)
T 2bwb_A            9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL   44 (46)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999999984999789999999995998999999986


No 27 
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=93.13  E-value=0.13  Score=30.09  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999987199989999999962999899999999823
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      ..+.+||++-=.--..|-+||.+++||++.||++|-..|
T Consensus        68 ~QL~qL~eMGF~D~~~Nl~AL~~t~GdV~~AIe~Ll~gg  106 (108)
T 2cwb_A           68 PQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG  106 (108)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             999999986996589999999992998999999997079


No 28 
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.94  E-value=0.089  Score=31.14  Aligned_cols=41  Identities=22%  Similarity=0.135  Sum_probs=33.2

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299-989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk   44 (296)
                      .+....|++|=+ -|-+--.|++||..+++ ++|.|++||-..
T Consensus         7 ~vd~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   48 (64)
T 1whc_A            7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             679999999999-599999999999994799999999999987


No 29 
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.82  E-value=0.091  Score=31.08  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             5899999998719998999999996299-989999999982
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK   44 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk   44 (296)
                      ....|.+|=++ |-+--.|++||..+++ |+|.|++||-..
T Consensus        19 ~~~~l~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~~Wll~h   58 (64)
T 2cpw_A           19 HGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             CCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             CHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999996-99899999999996599999999999967


No 30 
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.79  E-value=0.082  Score=31.39  Aligned_cols=37  Identities=35%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             89999999871999899999999629998999999998
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      .+.|++|=++ |-+--.+++||..++||+|.|.+||=.
T Consensus         5 e~av~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~   41 (43)
T 2g3q_A            5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999985-999999999999819999999999873


No 31 
>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A
Probab=92.43  E-value=0.18  Score=29.15  Aligned_cols=28  Identities=18%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             HHHHHHEECCCCCEEEEEEEEECCHHHC
Q ss_conf             2200004407885369999840310102
Q gi|254780778|r   59 EGLIGIARDGYKKASIVEVNVETDSLAK   86 (296)
Q Consensus        59 eG~v~~~~~~~~~a~liEincETDFVAk   86 (296)
                      .|.|+.|..+.+.|+|++++++.+-+||
T Consensus       140 ~~~v~~Y~H~~kIgvlV~~~~~~~e~ak  167 (1289)
T 3agp_A          140 GDVLGSYQHGARIGVLVAAKGADEELVK  167 (1289)
T ss_dssp             CSEEEEEEETTTEEEEEEETTCCHHHHH
T ss_pred             CCEEEEEECCCEEEEEEEECCCCHHHHH
T ss_conf             8879999729979999995687599998


No 32 
>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=92.15  E-value=0.1  Score=30.75  Aligned_cols=48  Identities=13%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2222100000135323460344344430354321---578999885655667654332
Q gi|254780778|r  147 CVSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPS  201 (296)
Q Consensus       147 ~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~  201 (296)
                      .+.+|.|+.|+.+       ..|+||++.+.++-   ++.+..|++++|..+....|.
T Consensus        55 ~t~eG~I~~~~~~-------~~~~mvElNCETDFVArNe~F~~l~~~ia~~~l~~~~~  105 (282)
T 1efu_B           55 VAADGVIKTKIDG-------NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKIT  105 (282)
T ss_dssp             CCCEEEEEEEEET-------TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHCCCEEEEECC-------CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             1003614676539-------86899999524110106734899999999999845743


No 33 
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=90.75  E-value=0.46  Score=26.38  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf             5589999999871999899999999629-9989999999982
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK   44 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk   44 (296)
                      +....|.+|=++ |-+--.|++||..++ +|++.|++||-..
T Consensus        28 ~d~~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   68 (84)
T 1vek_A           28 ANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             999999999995-99999999999998699999999999987


No 34 
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.62  E-value=0.38  Score=26.99  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999999871999-8999999996299989999999982
Q gi|254780778|r    7 VAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         7 ~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .++.+||+.||-- ..---+||..++||+..|+-+|-.+
T Consensus        26 ~lLNQLrEITGI~D~q~Lq~ALkas~Gdl~~AV~~LT~~   64 (80)
T 1vdl_A           26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK   64 (80)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf             999999997376849999999980378899999998527


No 35 
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=89.38  E-value=0.099  Score=30.86  Aligned_cols=68  Identities=18%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0146778999985434310244431022221000001353234603443444303543215789998856556676
Q gi|254780778|r  121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVM  196 (296)
Q Consensus       121 ~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhia  196 (296)
                      ..+...+..+ -+-|-...-+|..+ .+.+|.+++|+|++     +++|++|++.+.++.......| .++|.+||
T Consensus        30 gD~~~A~~~L-rk~G~~~A~kk~~r-~a~eG~i~~~v~~~-----~~~~~lvelncETDFVarn~~F-~~la~~iA   97 (196)
T 1aip_C           30 WDEEKAVQLL-RERGAMKAAKKADR-EAREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELF-QNLAKDLA   97 (196)
T ss_dssp             TCHHHHHHHH-HHHHHHHHHHHTTS-CCCCCEEEEEECTT-----SSEEEEEEEECSSHHHHTSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHH-HHHCHHHHHHHHHH-HHCCCEEEEEEECC-----CCEEEEEEEECCCCHHHCCCHH-HHHHHHHH
T ss_conf             9899999999-98342577877667-32155699999638-----9779999996588404307306-77899999


No 36 
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=89.33  E-value=0.6  Score=25.62  Aligned_cols=45  Identities=24%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             973558999999987199989999999962999899999999823
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      |+.---.+|.+....||+.--.++.-|+.++||++.|+..--..|
T Consensus         1 ls~~q~~li~qF~~iTg~~~~~A~~~L~~~~wnle~Ai~~yf~~g   45 (46)
T 1v92_A            1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG   45 (46)
T ss_dssp             CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             973199999999999894999999999996996999999998668


No 37 
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=86.29  E-value=1.5  Score=22.95  Aligned_cols=38  Identities=8%  Similarity=0.121  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             58999999987199989999999962999899999999
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      --++|.+|-..||--.-=|.+.|+++++|++.|+....
T Consensus         7 qq~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~   44 (59)
T 1oai_A            7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT   44 (59)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999898899999999985989999999999


No 38 
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.76  E-value=1.3  Score=23.49  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999871999899999999629998999999998
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      -+|.+.+..||+.-.--|--|+.||||+|-|+...-.
T Consensus        17 gLi~qFtaiTgate~v~khmLEAcn~NLEMAvtM~ld   53 (62)
T 2dal_A           17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD   53 (62)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHEEEEEC
T ss_conf             8999999850408899999999818875422012443


No 39 
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=84.49  E-value=1.2  Score=23.59  Aligned_cols=41  Identities=15%  Similarity=0.006  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             35589999999871999899999999629998999999998
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      .+--++|.+|-..||--.-=|.+.|+++++|++.|+..-.+
T Consensus         4 ~~qq~mv~~~~~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~~   44 (57)
T 2jp7_A            4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS   44 (57)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             89999999999997999999999999869889999999999


No 40 
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=81.17  E-value=1.7  Score=22.69  Aligned_cols=39  Identities=36%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             35589999999871999899999999629998999999998
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      +++++ |..|-. -|.+..|.++||.=+.+|+|-|-.+||+
T Consensus        10 nl~~e-I~~Lm~-~GYs~~dv~rAL~Ia~NniemA~~ILrE   48 (52)
T 2ooa_A           10 NVDAK-IAKLMG-EGYAFEEVKRALEIAQNNVEVARSILRE   48 (52)
T ss_dssp             -CHHH-HHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCCHH-HHHHHH-CCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             22179-999998-6655999999999986229999999998


No 41 
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.54  E-value=2.9  Score=21.05  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             999999987199-9899999999629998999999
Q gi|254780778|r    7 VAVKELRGKTGA-GIMDCKNALLEAKGDSELAIDI   40 (296)
Q Consensus         7 ~~iK~LR~~Tga-g~~dCKkAL~e~~gD~e~Ai~~   40 (296)
                      .-+-+..+.||- .|-.|+.-|+..+||+|.|+.-
T Consensus        20 eKllqFQdiTGied~~~Cr~iL~~H~WdlE~AVq~   54 (67)
T 2dam_A           20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD   54 (67)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999987107675999999999918859999999


No 42 
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.30  E-value=2.1  Score=22.04  Aligned_cols=40  Identities=30%  Similarity=0.406  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      +++.+ |..|-. -|.+..|.++||.=+.+|+|-|-.+||+=
T Consensus         8 ~~~~e-I~~Lm~-~GYs~~~v~~AL~Ia~NniemA~~ILrEF   47 (53)
T 2d9s_A            8 QLSSE-IERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREF   47 (53)
T ss_dssp             CSHHH-HHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHH-CCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             10189-999998-55449999999999861199999999997


No 43 
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=78.89  E-value=1.9  Score=22.24  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             19998999999996299989999999982
Q gi|254780778|r   16 TGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus        16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      -|.+..|.++||.=+.+|+|-|-.+||+=
T Consensus        14 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF   42 (46)
T 2oo9_A           14 QGYSYQDIQKALVIAQNNIEMAKNILREF   42 (46)
T ss_dssp             TTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             67769999999999862199999999987


No 44 
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=76.06  E-value=2.4  Score=21.65  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=26.8

Q ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             19998999999996299989999999982
Q gi|254780778|r   16 TGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus        16 Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      -|.+..|.++||.=+.+|+|-|-.+||+=
T Consensus        17 ~GYs~~~v~rAL~Ia~NniemA~~ILrEF   45 (56)
T 2juj_A           17 QGYSYQDIQKALVIAQNNIEMAKNILREF   45 (56)
T ss_dssp             TTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             55449999999999871199999999998


No 45 
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=73.63  E-value=3  Score=20.94  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf             899999998719998999999996299
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKG   32 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~g   32 (296)
                      ...||++|..||.|+++.|+..+.+..
T Consensus        20 i~vIK~VR~itglgLkeAK~lVe~~P~   46 (74)
T 1ctf_A           20 VAVIKAVRGATGLGLKEAKDLVESAPA   46 (74)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf             479999987659999999999871889


No 46 
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 ligases, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A*
Probab=70.43  E-value=5.7  Score=19.15  Aligned_cols=37  Identities=11%  Similarity=0.035  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             8999999987199989999999962999899999999
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      -+.|++.+..||++=....+.|..+++|+|.|++--=
T Consensus        16 k~~i~qF~~~T~ase~~A~~~L~~~~W~le~A~d~yf   52 (270)
T 3bq3_A           16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYY   52 (270)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999988299999999999987998799999998


No 47 
>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1 d.45.1.1 PDB: 1rqv_A 2gya_3 2gyc_3
Probab=52.09  E-value=12  Score=17.01  Aligned_cols=14  Identities=14%  Similarity=0.088  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99998543431024
Q gi|254780778|r  128 KQQIAITGECIKLR  141 (296)
Q Consensus       128 ~~~ia~iGEnI~l~  141 (296)
                      .+++..+.|...+.
T Consensus        20 ~eLv~~le~~fgv~   33 (120)
T 1rqu_A           20 VELISAMEEKFGVS   33 (120)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999994999


No 48 
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.83  E-value=12  Score=16.88  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5589999999871-999899999999629998999999998
Q gi|254780778|r    4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      -+-+.++.|+++= +------+--|..++||+|.||+-|-.
T Consensus         8 ~~ee~l~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~   48 (59)
T 1wgl_A            8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             76999999999878777999999999939977999999983


No 49 
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=43.89  E-value=8.5  Score=17.98  Aligned_cols=14  Identities=29%  Similarity=0.183  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99998543431024
Q gi|254780778|r  128 KQQIAITGECIKLR  141 (296)
Q Consensus       128 ~~~ia~iGEnI~l~  141 (296)
                      .+++..+.|...+.
T Consensus        21 ~eLv~~leek~gv~   34 (125)
T 2j01_L           21 KQLIDALKEAWGVT   34 (125)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999997988


No 50 
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=41.72  E-value=15  Score=16.28  Aligned_cols=18  Identities=22%  Similarity=0.121  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0146778999985434310244
Q gi|254780778|r  121 ITVGDGIKQQIAITGECIKLRR  142 (296)
Q Consensus       121 ~tv~d~i~~~ia~iGEnI~l~R  142 (296)
                      .||++.+    ..|+.+|.|..
T Consensus        32 qtV~~l~----~~Ic~KiGItN   49 (128)
T 2kc2_A           32 KTVTDML----MTICARIGITN   49 (128)
T ss_dssp             SSHHHHH----HHHHHHHTCCC
T ss_pred             CCHHHHH----HHHHHHHCCCC
T ss_conf             2799999----99998658787


No 51 
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.82  E-value=19  Score=15.67  Aligned_cols=40  Identities=10%  Similarity=-0.155  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5589999999871999899999999629998999999998
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      -++++...|+++-=.--.--.+.|.+.+||+.++++-|+.
T Consensus         8 q~a~lM~~L~eMGF~drqlN~~LL~KH~~nl~~vV~eLlq   47 (54)
T 2cp8_A            8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ   47 (54)
T ss_dssp             THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             5699999999917652899999999836849999999998


No 52 
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=38.72  E-value=6.3  Score=18.83  Aligned_cols=50  Identities=10%  Similarity=0.122  Sum_probs=21.2

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             344344430354321578999885655667654332045878362777766566677631257
Q gi|254780778|r  166 GSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSG  228 (296)
Q Consensus       166 GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~g  228 (296)
                      .||.+|-.+..-. + =.+.+ +|++-    = .|..| .+.|+.+--    +-++.++.+.|
T Consensus        67 ~Ki~vIK~vR~it-~-LgLkE-AK~lV----E-~p~~i-ke~vsKeeA----E~ikkkLe~aG  116 (122)
T 2zjq_5           67 SKINVIKEIRGIT-G-LGLKE-AKDMS----E-KGGVL-KEGVAKDEA----EKMKAQLEAAG  116 (122)
T ss_pred             CCCEEEEHHHHCC-C-CCHHH-HHHHH----H-CCHHH-HCCCCHHHH----HHHHHHHHHCC
T ss_conf             7653663025216-9-98899-99886----0-77166-418999999----99999999859


No 53 
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.26  E-value=23  Score=15.10  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             19998999999996299989999999
Q gi|254780778|r   16 TGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus        16 Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      -|-.-.+.-+||..+|||++-|--+|
T Consensus        14 mgfdpleaaqaldaangdldvaasfl   39 (40)
T 1z96_A           14 MGFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             17887899988754047578889862


No 54 
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.04  E-value=23  Score=15.07  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999987199989999999962999899999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      +.|-.|-+.++.-+.++-+||-.++||++++--+|+
T Consensus        15 ~~i~~~MeEF~ldL~tVTqAlLKnSGel~at~~fL~   50 (111)
T 3k6g_A           15 KIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLA   50 (111)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999999999775099999999972535899999998


No 55 
>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=32.49  E-value=24  Score=15.02  Aligned_cols=15  Identities=7%  Similarity=0.173  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999985434310244
Q gi|254780778|r  128 KQQIAITGECIKLRR  142 (296)
Q Consensus       128 ~~~ia~iGEnI~l~R  142 (296)
                      .+++..+.|...+..
T Consensus        19 ~eL~~~le~k~gv~~   33 (137)
T 2ftc_E           19 SDLNELLKKTLKIQD   33 (137)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999969984


No 56 
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.14  E-value=27  Score=14.65  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             89999999871-999899999999629998999999998
Q gi|254780778|r    6 AVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         6 ~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      .+.++.|+++= +------+--|.+++|++|.|++-|-.
T Consensus        19 ~~a~~~Lk~mFP~~D~~vI~~VL~a~~g~vd~aidaLL~   57 (67)
T 2dhy_A           19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ   57 (67)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999999877668999999999919977999999985


No 57 
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} SCOP: d.58.18.13
Probab=22.58  E-value=25  Score=14.82  Aligned_cols=15  Identities=7%  Similarity=-0.261  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             146778999985434
Q gi|254780778|r  122 TVGDGIKQQIAITGE  136 (296)
Q Consensus       122 tv~d~i~~~ia~iGE  136 (296)
                      +-+-.+.+++...|-
T Consensus        35 a~~pvis~l~~~~~v   49 (100)
T 2qsw_A           35 AKLPIISHIVQEYQV   49 (100)
T ss_dssp             CSSCHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHCC
T ss_conf             686599999998598


No 58 
>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1
Probab=21.00  E-value=31  Score=14.25  Aligned_cols=15  Identities=27%  Similarity=0.547  Sum_probs=9.7

Q ss_pred             CCHHHHHHHHHHH-HH
Q ss_conf             9989999999982-38
Q gi|254780778|r   32 GDSELAIDILRTK-GA   46 (296)
Q Consensus        32 gD~e~Ai~~LRkk-G~   46 (296)
                      .|++++++|-++- |.
T Consensus        17 ~Dle~s~~FY~~vLG~   32 (144)
T 2c21_A           17 GDLDRSIKFYTERLGM   32 (144)
T ss_dssp             SCHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             9999999999997497


No 59 
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=20.21  E-value=20  Score=15.44  Aligned_cols=21  Identities=10%  Similarity=0.041  Sum_probs=8.1

Q ss_pred             HHHCCCCCHHHHHHHHHHHHH
Q ss_conf             430354321578999885655
Q gi|254780778|r  172 VALQSSAEDKELLSAIGEKIA  192 (296)
Q Consensus       172 V~l~~~~~~~~~~~~~ak~iA  192 (296)
                      +.+.-+..+.+...+.++.+|
T Consensus        44 iel~i~~~~~e~a~~~~~~~~   64 (84)
T 2dgb_A           44 LEIVFPAENLLEAEEKAKAMG   64 (84)
T ss_dssp             EEEEEECSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHH
T ss_conf             999985899899999999998


Done!