HHSEARCH alignment of GI: 254780778 and SCOP domain: d1oqya1

Alignment
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.83  E-value=0.029  Score=32.77  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999998719998999999996299989999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      +.|.+|-+ -|-+--.|++||..++||+|.|++||
T Consensus         6 ~~i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           6 TMLTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999998-59989999999998589999999987


SCOP domain information

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]