RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>gnl|CDD|181810 PRK09377, tsf, elongation factor Ts; Provisional.
Length = 290
Score = 275 bits (705), Expect = 1e-74
Identities = 130/300 (43%), Positives = 171/300 (57%), Gaps = 25/300 (8%)
Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
M+ ++A VKELR +TGAG+MDCK AL EA GD E AI+ LR KG A+K+ GR +EG
Sbjct: 1 MAAITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEG 60
Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHS 119
L+ DG K +VEVN ETD +AKN DFQ+L + +A AL+ ++ +LA+ D
Sbjct: 61 LVAAKVDG-NKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLD-- 117
Query: 120 GITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAE 179
G TV + + IA GE I LRR A L GV+ SYLH G G IGVLVAL+ E
Sbjct: 118 GGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLH-----GGGRIGVLVALEGGDE 172
Query: 180 DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239
+ + IA+H+ +P +S + + +V +R +A + GK IVEKIV
Sbjct: 173 ------ELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKEEGKPEEIVEKIVE 226
Query: 240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295
G++ F KE VLL Q FV DP KTV LKE A +VVG F VG K+ +D
Sbjct: 227 GRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGIEKKEED 280
>gnl|CDD|129222 TIGR00116, tsf, translation elongation factor Ts. This protein is
found in Bacteria, mitochondria, and chloroplasts.
Length = 290
Score = 173 bits (439), Expect = 7e-44
Identities = 112/275 (40%), Positives = 147/275 (53%), Gaps = 14/275 (5%)
Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61
++A VKELR +TGAG+MDCK AL EA GD E AI LR G A+K+ R +EG+
Sbjct: 1 MAITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGV 60
Query: 62 IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHSG 120
I + DG KA IVEVN ETD +AKN F+ + + + +L+ + A +
Sbjct: 61 IVLKSDGN-KAVIVEVNSETDFVAKNAGFKEFANKLLDELKANKITTLEELQAQELE--N 117
Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180
+ + A GE I LRR A+L VI SYLHA IGVLVAL+ A D
Sbjct: 118 REKVEYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAG-----ARIGVLVALKGKA-D 171
Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240
+EL + IA+HV + P I + +V +R +A SGK I EK+V G
Sbjct: 172 EEL----AKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQAELSGKPKEIAEKMVEG 227
Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSI 275
+M+ F E LL Q FV+DPSKTV FLKE +
Sbjct: 228 RMKKFLAEISLLGQKFVMDPSKTVGQFLKEKNAKV 262
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed.
Length = 198
Score = 116 bits (293), Expect = 6e-27
Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63
++A VKELR KTGAG+MDCK AL EA GD E AI+ LR KG A+K+ GR +EGL+G
Sbjct: 3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVG 62
Query: 64 --IARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIA 98
I G + +VE+N ETD +A+ +F+ L +IA
Sbjct: 63 SYIHTGG-RIGVLVELNCETDFVARTEEFKELAKDIA 98
Score = 98.0 bits (245), Expect = 2e-21
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISV 205
+EG++ SY+H G IGVLV L + E + + IA+ + A+P +S
Sbjct: 57 AEGLVGSYIHTG-----GRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSR 111
Query: 206 QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVS 265
+ + ++ ++ Y +AL+ GK NIVEKIV G+++ F KE LL Q F+ DPSKTV
Sbjct: 112 EDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVE 171
Query: 266 DFLKESEKSIGASIEVVGVSHFVVG 290
D +KE+ IG +I V + F +G
Sbjct: 172 DLIKEAIAKIGENIVVRRFARFELG 196
>gnl|CDD|177566 PHA03242, PHA03242, envelope glycoprotein M; Provisional.
Length = 428
Score = 31.0 bits (70), Expect = 0.39
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 144 ALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED--KELLSAI-----GEKIAVHVM 196
LL V EGV+S Y+ P LG++ + +A + G + V V
Sbjct: 269 LLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGYYVAETQWPGAQTGVRVA 328
Query: 197 LASPSVISVQML 208
LA ++ ++ M
Sbjct: 329 LALVALFALAMA 340
>gnl|CDD|173469 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
Length = 506
Score = 29.5 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 204 SVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241
SVQM I +K A + D G GNI +I+N K
Sbjct: 392 SVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSK 429
>gnl|CDD|149043 pfam07759, DUF1615, Protein of unknown function (DUF1615). This is
a family of proteins of unknown function expressed by
various bacterial species. Some members of this family
are thought to be lipoproteins. Another member of this
family is thought to be involved in photosynthesis.
Length = 318
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 86 KNTDFQSLVSNIAGIALSTDGSL 108
+N FQS +S + G L+ DG L
Sbjct: 195 RNAAFQSALSRLTGKKLALDGDL 217
>gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate
synthase family protein. This model represents
uncharacterized proteins related to 2-isopropylmalate
synthases and homocitrate synthases but phylogenetically
distint. Each species represented in the seed alignment
also has a member of a known family of 2-isopropylmalate
synthases.
Length = 526
Score = 29.5 bits (66), Expect = 1.2
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 185 SAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQS 244
SA K VHV + + + + P +V N+R ++E +G S N++ K
Sbjct: 292 SAFAHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSEL--AGLS-NVLSKA------- 341
Query: 245 FCKECVLLHQGFVVDPS----KTVSDFLKESEK 273
KE G +D +T+ +KE E+
Sbjct: 342 --KE-----FGIEIDRQSPACRTILAKIKELEQ 367
>gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 28.3 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 32 GDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEV 77
GD+ +AID+LR G + A + RKV+E + A + + + EV
Sbjct: 246 GDARVAIDLLRRAG-LIAEREGSRKVTEEDVRKAYEKSEIVHLSEV 290
>gnl|CDD|185565 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase;
Provisional.
Length = 482
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 83 SLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFD 117
+LAK ++ +V GI S+DN+LA D
Sbjct: 236 ALAKCSELMDIVRK--GIKYVQVISIDNILAKVLD 268
>gnl|CDD|148500 pfam06915, DUF1278, Protein of unknown function (DUF1278). This
family consists of several hypothetical plant specific
proteins of around 150 residues in length. Members of
this family contain several conserved cysteine
residues. The function of the family is unknown.
Length = 138
Score = 27.5 bits (61), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 13 RGKTGAGIMDCKNALLEAK 31
R + G G+M+C NAL+E K
Sbjct: 47 RLEGGGGLMECWNALMELK 65
>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other.
Length = 365
Score = 27.2 bits (61), Expect = 5.0
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 31 KGDSELAIDILRTKGAMAASKREGR-KVSEGLIGIARDGYKKASIVEV 77
GD+ AID+LR G +A +REG +V+E + A++ +K ++E+
Sbjct: 237 HGDARKAIDLLRVAGEIA--EREGAERVTEDHVEKAQEKIEKDRLLEL 282
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 26.9 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 75 VEVNVETDSLAKNTDFQSLVSNIA---GIALSTDGSLDNVL----AMPFDH 118
+E+ + + A T V N A GI + T+G DNVL + F
Sbjct: 944 IELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSR 994
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 26.7 bits (59), Expect = 7.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 17 GAG--IMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSE 59
G G MD A L G ++ + RTK M AS+ E + E
Sbjct: 673 GGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 26.7 bits (59), Expect = 8.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 243 QSFCKECVLLHQGFVVDPSKTVSDF 267
QSFC+ ++ +G +V+
Sbjct: 215 QSFCQRVAVMDKGQIVEECDVAQLL 239
>gnl|CDD|183741 PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed.
Length = 251
Score = 26.2 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 151 GVISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVI 203
G+++SY P EG G LV +L+ + E + + +ASP +I
Sbjct: 149 GLVASYDRIPPGEGFGGQTALV---------QLVDQLSEAFTLALRIASPFII 192
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.313 0.131 0.351
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,492,810
Number of extensions: 280413
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 20
Length of query: 296
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 203
Effective length of database: 3,984,929
Effective search space: 808940587
Effective search space used: 808940587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)