RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265) Length = 265 Score = 207 bits (529), Expect = 9e-55 Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 28/289 (9%) Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61 ++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G+ Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGV 60 Query: 62 IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGI 121 I DG I+EVN +TD +AK+ FQ+ + A++ + Sbjct: 61 IKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGK-------ITDVEVLKA 112 Query: 122 TVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDK 181 + +A GE I +RR A + V+ SY H IGVLVA K Sbjct: 113 QFEEERVALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAA------K 158 Query: 182 ELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 + + IA+HV + P I + + +V + + A+ SGK I EK+V G+ Sbjct: 159 GADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218 Query: 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290 M+ F E L Q FV++PSKTV LKE + EV G F VG Sbjct: 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVG 261 >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196) Length = 137 Score = 123 bits (310), Expect = 3e-29 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 13/140 (9%) Query: 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63 +K+LR TGAG+MD K AL +A D E A+ +LR +GAM A+K+ R+ EG+IG Sbjct: 2 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIG 61 Query: 64 IA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGIT 122 + +VE+N ETD +A+N FQ+L ++A + + Sbjct: 62 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------NDDKVK 109 Query: 123 VGDGIKQQIAITGECIKLRR 142 V + I+Q IA GE I +RR Sbjct: 110 VKELIQQAIAKIGENIVVRR 129 Score = 26.7 bits (59), Expect = 3.7 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290 D V + ++++ IG +I V F +G Sbjct: 105 DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 136 >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:46-291) Length = 246 Score = 100 bits (251), Expect = 2e-22 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 67/278 (24%) Query: 44 KGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS 103 +G A++ GRK EGLIG+ ++G +VEVN ETD +++N FQ LV +A L Sbjct: 2 EGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLL 60 Query: 104 TDGSLDNVLAMPF---------------DHSGITVGDGIKQQIAITGECIKLRRSALLCV 148 +L + L+ ++ D + I GE + L+R+A + V Sbjct: 61 HCQNLKDQLSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKV 120 Query: 149 -SEGVISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPS 201 + + SY+H + LG G LV ++E K L+ +G ++ HV Sbjct: 121 PAGFYVGSYVHGAMHSPSLHNLVLGKYGALVIC-ETSELKANLADLGRRLGQHV------ 173 Query: 202 VISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPS 261 + S ++ E +L Q +++DPS Sbjct: 174 ----------------------VGMAPLSVGSLDDEPG-----GEAETKMLSQPYLLDPS 206 Query: 262 KTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295 T+ +++ + VV F G + + Sbjct: 207 ITLGQYVQP------HGVSVVDFVRFECGEGEDAADAE 238 >2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} (A:) Length = 64 Score = 82.8 bits (205), Expect = 5e-17 Identities = 17/60 (28%), Positives = 24/60 (40%) Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 S S + +LR KTG ++CK AL GD + A L + + S G Sbjct: 5 SSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:1-50,A:110-145) Length = 86 Score = 70.1 bits (172), Expect = 3e-13 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%) Query: 58 SEGLIGIA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPF 116 EG+IG + +VE+N ETD +A+N FQ+L ++A Sbjct: 2 REGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------ 49 Query: 117 DHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGV 152 + + V + I+Q IA GE I +RR + + Sbjct: 50 NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMM 85 Score = 26.6 bits (59), Expect = 4.1 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290 D V + ++++ IG +I V F +G Sbjct: 51 DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 82 >1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:1-45) Length = 45 Score = 67.7 bits (166), Expect = 2e-12 Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 S S + +LR KTG ++CK AL GD + A L + Sbjct: 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQA 44 >1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} (A:51-109) Length = 59 Score = 59.6 bits (145), Expect = 4e-10 Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257 P +S + + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV Sbjct: 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58 >1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:105-163) Length = 59 Score = 59.6 bits (145), Expect = 4e-10 Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257 P +S + + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV Sbjct: 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58 >1pmh_X Cscbm27-1, beta-1,4-mannanase; jellyroll beta-sandwich, hydrolase; HET: MAN BMA; 1.06A {Caldicellulosiruptor saccharolyticus} (X:) Length = 185 Score = 29.1 bits (65), Expect = 0.79 Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 5/47 (10%) Query: 67 DGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGS--LDNV 111 Y + + LV AG + G LDNV Sbjct: 135 KDYTV---IHKAFAIPEDFRTKKRAQLVFQFAGQNSNYKGPIYLDNV 178 >2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein folding, virulence, bacterial; 2.20A {Salmonella typhimurium} (C:) Length = 240 Score = 28.4 bits (63), Expect = 1.1 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%) Query: 171 LVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALD---- 226 L A S E K LL +G + ++ S P + K+A E L+ Sbjct: 81 LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSA--FGPWLPETKKAEAKLENLEKQLL 138 Query: 227 -------SGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDP 260 G+ + +V ++ + C+ + G +DP Sbjct: 139 DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDP 179 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:1-82,C:185-330) Length = 228 Score = 26.8 bits (59), Expect = 3.3 Identities = 6/20 (30%), Positives = 13/20 (65%) Query: 182 ELLSAIGEKIAVHVMLASPS 201 + L A+G+ I +H++ +P Sbjct: 123 QALQALGKHIEIHLLFTNPC 142 >2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP} (A:1-113,A:232-292) Length = 174 Score = 26.3 bits (58), Expect = 4.7 Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 78 NVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAIT 134 N +TD A + L S I +A T + +L F+ +G + I ++ Sbjct: 50 NTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVS 106 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:550-614) Length = 65 Score = 25.9 bits (56), Expect = 6.1 Identities = 4/6 (66%), Positives = 5/6 (83%) Query: 75 VEVNVE 80 VEV +E Sbjct: 2 VEVKIE 7 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:550-611) Length = 62 Score = 25.9 bits (56), Expect = 7.6 Identities = 4/6 (66%), Positives = 5/6 (83%) Query: 75 VEVNVE 80 VEV +E Sbjct: 2 VEVKIE 7 >1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} (A:) Length = 104 Score = 25.6 bits (56), Expect = 8.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 VK+L TG +C AL + GD AI++L Sbjct: 43 VKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.131 0.351 Gapped Lambda K H 0.267 0.0705 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,966,176 Number of extensions: 80121 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 25 Length of query: 296 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 208 Effective length of database: 1,981,209 Effective search space: 412091472 Effective search space used: 412091472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 54 (24.6 bits)