RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts
[Candidatus Liberibacter asiaticus str. psy62]
         (296 letters)



>1efu_B Elongation factor TS; complex (TWO elongation factors);
           2.50A {Escherichia coli} (B:1-265)
          Length = 265

 Score =  207 bits (529), Expect = 9e-55
 Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 28/289 (9%)

Query: 2   SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61
           ++++A  VKELR +TGAG+MDCK AL EA GD ELAI+ +R  GA+ A+K+ G   ++G+
Sbjct: 1   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGV 60

Query: 62  IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGI 121
           I    DG     I+EVN +TD +AK+  FQ+    +   A++             +    
Sbjct: 61  IKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGK-------ITDVEVLKA 112

Query: 122 TVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDK 181
              +     +A  GE I +RR A   +   V+ SY H         IGVLVA       K
Sbjct: 113 QFEEERVALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAA------K 158

Query: 182 ELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241
                + + IA+HV  + P  I  + +   +V  +    +  A+ SGK   I EK+V G+
Sbjct: 159 GADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218

Query: 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
           M+ F  E  L  Q FV++PSKTV   LKE       + EV G   F VG
Sbjct: 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVG 261


>1aip_C EF-TS, elongation factor TS; nucleotide exchange,
           GTP-binding, complex of two elongation factors; 3.00A
           {Thermus thermophilus} (C:1-104,C:164-196)
          Length = 137

 Score =  123 bits (310), Expect = 3e-29
 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 13/140 (9%)

Query: 4   VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63
                +K+LR  TGAG+MD K AL +A  D E A+ +LR +GAM A+K+  R+  EG+IG
Sbjct: 2   SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIG 61

Query: 64  IA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGIT 122
                  +   +VE+N ETD +A+N  FQ+L  ++A                  +   + 
Sbjct: 62  HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------NDDKVK 109

Query: 123 VGDGIKQQIAITGECIKLRR 142
           V + I+Q IA  GE I +RR
Sbjct: 110 VKELIQQAIAKIGENIVVRR 129



 Score = 26.7 bits (59), Expect = 3.7
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
           D    V + ++++   IG +I V     F +G
Sbjct: 105 DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 136


>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
           protein-protein complex, translation; HET: MSE; 2.20A
           {Bos taurus} (B:46-291)
          Length = 246

 Score =  100 bits (251), Expect = 2e-22
 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 67/278 (24%)

Query: 44  KGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS 103
           +G   A++  GRK  EGLIG+ ++G     +VEVN ETD +++N  FQ LV  +A   L 
Sbjct: 2   EGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLL 60

Query: 104 TDGSLDNVLAMPF---------------DHSGITVGDGIKQQIAITGECIKLRRSALLCV 148
              +L + L+                       ++ D +   I   GE + L+R+A + V
Sbjct: 61  HCQNLKDQLSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKV 120

Query: 149 -SEGVISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPS 201
            +   + SY+H +          LG  G LV    ++E K  L+ +G ++  HV      
Sbjct: 121 PAGFYVGSYVHGAMHSPSLHNLVLGKYGALVIC-ETSELKANLADLGRRLGQHV------ 173

Query: 202 VISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPS 261
                                    +  S   ++            E  +L Q +++DPS
Sbjct: 174 ----------------------VGMAPLSVGSLDDEPG-----GEAETKMLSQPYLLDPS 206

Query: 262 KTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295
            T+  +++         + VV    F  G      + +
Sbjct: 207 ITLGQYVQP------HGVSVVDFVRFECGEGEDAADAE 238


>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA,
          structural genomics, human, NPPSFA; NMR {Homo sapiens}
          (A:)
          Length = 64

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 1  MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
           S  S   + +LR KTG   ++CK AL    GD + A   L  +       +     S G
Sbjct: 5  SSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64


>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus}
           (A:1-50,A:110-145)
          Length = 86

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 58  SEGLIGIA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPF 116
            EG+IG       +   +VE+N ETD +A+N  FQ+L  ++A                  
Sbjct: 2   REGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------ 49

Query: 117 DHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGV 152
           +   + V + I+Q IA  GE I +RR     +   +
Sbjct: 50  NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMM 85



 Score = 26.6 bits (59), Expect = 4.1
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
           D    V + ++++   IG +I V     F +G
Sbjct: 51  DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 82


>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
          protein-protein complex, translation; HET: MSE; 2.20A
          {Bos taurus} (B:1-45)
          Length = 45

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 2  SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45
          S  S   + +LR KTG   ++CK AL    GD + A   L  + 
Sbjct: 1  SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQA 44


>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus}
           (A:51-109)
          Length = 59

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257
           P  +S + +    +  +R  Y+  AL+ GK   I EKI  G+++ + +E VLL Q FV
Sbjct: 1   PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58


>1aip_C EF-TS, elongation factor TS; nucleotide exchange,
           GTP-binding, complex of two elongation factors; 3.00A
           {Thermus thermophilus} (C:105-163)
          Length = 59

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257
           P  +S + +    +  +R  Y+  AL+ GK   I EKI  G+++ + +E VLL Q FV
Sbjct: 1   PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58


>1pmh_X Cscbm27-1, beta-1,4-mannanase; jellyroll beta-sandwich,
           hydrolase; HET: MAN BMA; 1.06A {Caldicellulosiruptor
           saccharolyticus} (X:)
          Length = 185

 Score = 29.1 bits (65), Expect = 0.79
 Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 5/47 (10%)

Query: 67  DGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGS--LDNV 111
             Y     +          +      LV   AG   +  G   LDNV
Sbjct: 135 KDYTV---IHKAFAIPEDFRTKKRAQLVFQFAGQNSNYKGPIYLDNV 178


>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone,
           translocation, protein folding, virulence, bacterial;
           2.20A {Salmonella typhimurium} (C:)
          Length = 240

 Score = 28.4 bits (63), Expect = 1.1
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 171 LVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALD---- 226
           L A   S E K LL  +G +    ++       S     P +   K+A    E L+    
Sbjct: 81  LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSA--FGPWLPETKKAEAKLENLEKQLL 138

Query: 227 -------SGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDP 260
                   G+   +   +V  ++  +   C+  + G  +DP
Sbjct: 139 DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDP 179


>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
           helicase, hydrolase, DNA repair; HET: DNA; 3.1A
           {Escherichia coli} (C:1-82,C:185-330)
          Length = 228

 Score = 26.8 bits (59), Expect = 3.3
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 182 ELLSAIGEKIAVHVMLASPS 201
           + L A+G+ I +H++  +P 
Sbjct: 123 QALQALGKHIEIHLLFTNPC 142


>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A
           {Sphingomonas SP} (A:1-113,A:232-292)
          Length = 174

 Score = 26.3 bits (58), Expect = 4.7
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 78  NVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAIT 134
           N +TD  A   +   L S I  +A  T  +   +L   F+     +G    + I ++
Sbjct: 50  NTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVS 106


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (A:550-614)
          Length = 65

 Score = 25.9 bits (56), Expect = 6.1
 Identities = 4/6 (66%), Positives = 5/6 (83%)

Query: 75 VEVNVE 80
          VEV +E
Sbjct: 2  VEVKIE 7


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (B:550-611)
          Length = 62

 Score = 25.9 bits (56), Expect = 7.6
 Identities = 4/6 (66%), Positives = 5/6 (83%)

Query: 75 VEVNVE 80
          VEV +E
Sbjct: 2  VEVKIE 7


>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin
          associated domain, structural genomics, riken
          structural genomics/proteomics initiative; NMR {Mus
          musculus} (A:)
          Length = 104

 Score = 25.6 bits (56), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 9  VKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41
          VK+L   TG    +C  AL +  GD   AI++L
Sbjct: 43 VKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,966,176
Number of extensions: 80121
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 25
Length of query: 296
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 208
Effective length of database: 1,981,209
Effective search space: 412091472
Effective search space used: 412091472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)