RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation
domain {Thermus thermophilus [TaxId: 274]}
Length = 142
Score = 100 bits (249), Expect = 2e-22
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISV 205
EG+I Y+H + +GVLV L + EL + + +A+H+ + +P +S
Sbjct: 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSA 56
Query: 206 QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVS 265
+ + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV D V
Sbjct: 57 EEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVK 116
Query: 266 DFLKESEKSIGASIEVVGVSHFVVG 290
+ ++++ IG +I V F +G
Sbjct: 117 ELIQQAIAKIGENIVVRRFCRFELG 141
Score = 26.6 bits (58), Expect = 3.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 58 SEGLIGI-ARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIA 98
EG+IG + +VE+N ETD +A+N FQ+L ++A
Sbjct: 2 REGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLA 43
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 143
Score = 78.5 bits (193), Expect = 7e-16
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 152 VISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPS 211
V+ SY H IGVLVA + + E+ + + IA+HV + P I + +
Sbjct: 2 VLGSYQHG------ARIGVLVAAKGADEE------LVKHIAMHVAASKPEFIKPEDVSAE 49
Query: 212 IVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKES 271
+V + + A+ SGK I EK+V G+M+ F E L Q FV++PSKTV LKE
Sbjct: 50 VVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKE- 108
Query: 272 EKSIGASIEVVGVSHFVVG----KENDD 295
+ EV G F VG K D
Sbjct: 109 -----HNAEVTGFIRFEVGEGIEKVETD 131
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 75.8 bits (187), Expect = 4e-15
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREG 54
++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G
Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAG 53
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 111
Score = 74.7 bits (183), Expect = 9e-15
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 54 GRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLA 113
GRK EGLIG+ ++G +VEVN ETD +++N FQ LV +A L +L + L+
Sbjct: 1 GRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLS 59
Query: 114 MP---------------FDHSGITVGDGIKQQIAITGECIKLRRSALLCVS 149
++ D + I GE + L+R+A + V
Sbjct: 60 TYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP 110
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 73.9 bits (182), Expect = 2e-14
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR 55
+K+LR TGAG+MD K AL +A D E A+ +LR +GAM A+K+ R
Sbjct: 6 IKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts),
N-terminal domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 56
Score = 72.7 bits (179), Expect = 3e-14
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR 55
S S + +LR KTG ++CK AL GD + A L + + R
Sbjct: 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAAR 54
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 85
Score = 67.2 bits (164), Expect = 2e-12
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 58 SEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFD 117
++G+I DG I+EVN +TD +AK+ FQ+ + A++ + VL F+
Sbjct: 3 ADGVIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFE 61
Query: 118 HSGITVGDGIKQQIAITGECIKLRRSALL 146
+ +A GE I +RR A L
Sbjct: 62 -------EERVALVAKIGENINIRRVAAL 83
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 52.2 bits (125), Expect = 5e-08
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 46/146 (31%)
Query: 151 GVISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVIS 204
+ SY+H + LG G LV ++S K L+ +G ++ HV+ +P +
Sbjct: 2 FYVGSYVHGAMHSPSLHNLVLGKYGALVICETSE-LKANLADLGRRLGQHVVGMAPLSVG 60
Query: 205 VQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTV 264
+P E +L Q +++DPS T+
Sbjct: 61 SLDDEPGGE---------------------------------AETKMLSQPYLLDPSITL 87
Query: 265 SDFLKESEKSIGASIEVVGVSHFVVG 290
+++ + VV F G
Sbjct: 88 GQYVQP------HGVSVVDFVRFECG 107
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 27.3 bits (60), Expect = 1.8
Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 188 GEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKI 237
G + L SP + + ++ + +++ S + +
Sbjct: 69 GVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNL--SDREIRRKLRA 116
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 347
Score = 26.9 bits (59), Expect = 2.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 182 ELLSAIGEKIAVHVMLASPS 201
+ L A+G+ I +H++ +P
Sbjct: 225 QALQALGKHIEIHLLFTNPC 244
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS
coronavirus [TaxId: 227859]}
Length = 123
Score = 26.0 bits (57), Expect = 4.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 250 VLLHQGFVVDPSKTVSDFLKESEKSIGASIEVV 282
VL F VDP+K D+L + I ++++
Sbjct: 8 VLSFCAFAVDPAKAYKDYLASGGQPITNCVKML 40
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12,
DNA-binding domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 58
Score = 25.1 bits (55), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 236 KIVNGKMQSFCKECVLLH 253
+V G MQ FC++C H
Sbjct: 35 ALVGGIMQRFCQQCSRFH 52
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish
akaei (Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 25.0 bits (54), Expect = 7.3
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 177 SAEDKELLSAIGEKIAVHV 195
S+++K+ + +G I +
Sbjct: 3 SSQNKKAIEELGNLIKANA 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.351
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 974,751
Number of extensions: 41782
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 18
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)