HHsearch alignment for GI: 254780780 and conserved domain: cd01278
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.95 E-value=2.3e-27 Score=191.93 Aligned_cols=100 Identities=25% Similarity=0.285 Sum_probs=83.6
Q ss_pred CHHHHHHCCCCCCC--EEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 65454446888731--7877890999941788898229999415542134402788898999999730445531352666
Q gi|254780780|r 13 NIFIKIIRNETNAC--RVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGI 90 (155)
Q Consensus 13 CiFC~Ii~ge~p~~--~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ 90 (155)
T Consensus 2 CiFC~Ii~g~~p~~~~ivyEdd~~~af~Di~P~a~~H~LVIPK~Hi~~~~~l~~e~~~ll~~m~~~~~~~~~~~~~~~~~ 81 (104)
T cd01278 2 CHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPS 81 (104)
T ss_pred CCCCEEECCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64877336888986567975797999967998998449997156542387799989999999999999999983799877
Q ss_pred EEEEECCCCCCCEEEEEEEEEE
Q ss_conf 9998257566863101069999
Q gi|254780780|r 91 QILQFNGHAAGQTVPHLHFHVI 112 (155)
Q Consensus 91 ni~~~~g~~~gq~V~HlH~Hii 112 (155)
T Consensus 82 ~~~~~~~~~~gqsV~HlH~HvI 103 (104)
T cd01278 82 EFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred CEEEECCCCCCEEEEEEEEEEE
T ss_conf 7899688789873647499986