Query gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 113 out of 2377
Neff 7.8
Searched_HMMs 33803
Date Wed Jun 1 13:43:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780780.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2eo4_A 150AA long hypothetica 100.0 8.9E-35 2.6E-39 237.7 16.8 142 13-154 1-142 (149)
2 >3lb5_A HIT-like protein invol 100.0 1.8E-34 5.4E-39 235.8 14.7 144 1-148 18-161 (161)
3 >1ems_A Nitfhit, NIT-fragIle h 100.0 6.6E-34 1.9E-38 232.3 12.2 146 3-148 1-155 (155)
4 >3i4s_A Histidine triad protei 100.0 1.6E-33 4.8E-38 229.9 10.4 141 9-154 2-144 (149)
5 >2oik_A Histidine triad (HIT) 100.0 1.2E-32 3.7E-37 224.3 12.7 142 4-154 3-146 (154)
6 >3ksv_A Uncharacterized protei 100.0 9.6E-32 2.8E-36 218.8 12.9 122 1-122 1-122 (123)
7 >1fit_A FragIle histidine prot 100.0 1.2E-31 3.5E-36 218.3 11.8 136 12-149 2-147 (147)
8 >3imi_A HIT family protein; st 100.0 9E-31 2.7E-35 212.7 11.6 120 4-123 2-121 (122)
9 >1xqu_A HIT family hydrolase; 100.0 2.7E-30 7.8E-35 209.8 11.5 121 1-121 25-146 (147)
10 >1y23_A HIT, histidine triad p 100.0 1.8E-30 5.2E-35 210.9 10.1 116 8-123 2-117 (118)
11 >3i24_A HIT family hydrolase; 100.0 6.6E-30 1.9E-34 207.4 10.4 135 14-153 2-138 (149)
12 >1kpf_A Protein kinase C inter 100.0 1.1E-29 3.2E-34 206.0 11.1 120 2-121 6-125 (126)
13 >1gup_A Galactose-1-phosphate 99.9 2E-28 6E-33 198.1 5.8 147 8-154 191-345 (348)
14 >1z84_A Galactose-1-phosphate 99.9 3.5E-26 1E-30 184.1 6.0 140 6-148 206-349 (351)
15 >1vlr_A MRNA decapping enzyme; 99.9 4.1E-24 1.2E-28 171.2 7.5 104 17-122 7-120 (140)
16 >3bl9_A Scavenger mRNA-decappi 99.9 4.5E-24 1.3E-28 171.0 7.4 109 12-122 7-120 (140)
17 >1z84_A Galactose-1-phosphate 98.2 2.1E-05 6.3E-10 54.5 10.5 108 7-114 57-192 (351)
18 >1gup_A Galactose-1-phosphate 97.9 0.00017 5.1E-09 48.8 10.2 107 4-113 43-171 (348)
19 >2pof_A CDP-diacylglycerol pyr 96.9 0.0021 6.2E-08 42.0 5.7 99 10-112 15-120 (227)
20 >1mg4_A Doublecortin, doubleco 60.5 11 0.00033 18.8 3.7 57 31-91 15-74 (113)
21 >1uf0_A Serine/threonine-prote 56.2 14 0.00043 18.1 3.7 58 33-94 12-72 (116)
22 >2dnf_A Doublecortin domain-co 50.1 7.8 0.00023 19.7 1.5 60 30-93 13-72 (108)
23 >1omh_A TRWC protein; protein- 32.8 37 0.0011 15.5 6.5 100 11-113 51-166 (223)
24 >3gs3_A Symplekin, LD45768P; h 24.0 53 0.0016 14.6 5.3 42 113-154 28-69 (103)
25 >2ef0_A Ornithine carbamoyltra 21.3 60 0.0018 14.2 3.5 40 52-91 8-47 (182)
No 1
>>2eo4_A 150AA long hypothetical histidine triad nucleotide-binding protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} (A:)
Probab=100.00 E-value=8.9e-35 Score=237.73 Aligned_cols=142 Identities=32% Similarity=0.527 Sum_probs=137.0
Q ss_pred CHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 65454446888731787789099994178889822999941554213440278889899999973044553135266699
Q gi|254780780|r 13 NIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQI 92 (155)
Q Consensus 13 CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni 92 (155)
|+||+|++++.|+++||||+.++||+|++|..|||+||+||+|++++.||+++++.+++.+++++++++++.++++++|+
T Consensus 1 C~fC~i~~~~~~~~~v~e~~~~~~~~~~~p~~~gh~lvipk~H~~~~~~L~~~e~~~l~~~~~~~~~~l~~~~~~~~~~~ 80 (149)
T 2eo4_A 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL 80 (149)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 97782627988768898799499998368999857999971132317766566999999999999887664157516889
Q ss_pred EEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98257566863101069999523799765345577666889899999999999999998840
Q gi|254780780|r 93 LQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKELQNFLKT 154 (155)
Q Consensus 93 ~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~~l~~~l~~ 154 (155)
++|.|+.+||+|+|+|+|||||+++|.....+.+......+.+.+++++++||++|+.+..+
T Consensus 81 ~~~~~~~~g~~v~HlH~HiiPr~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 142 (149)
T 2eo4_A 81 LTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFKPRKEQEKEYYELLQKIIRESIENLKRK 142 (149)
T ss_dssp ECCCSGGGTCCSCSCCEEEEEECSSCCCTTSCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98425555866777899995465798875112356567781999999999999999999998
No 2
>>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae} (A:)
Probab=100.00 E-value=1.8e-34 Score=235.80 Aligned_cols=144 Identities=49% Similarity=0.714 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98766566589765454446888731787789099994178889822999941554213440278889899999973044
Q gi|254780780|r 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIA 80 (155)
Q Consensus 1 ~~~~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~a 80 (155)
++..+...++++|+||+|++++.++.+||||+.++||+|++|.++||+||+||+|++++.||+++++.+++.+++++.++
T Consensus 18 ~~~~~~~~~~~~C~fC~~~~~e~~~~iv~e~~~~~~~~~~~p~~~gh~lVipk~H~~~l~~l~~~e~~~l~~~~~~~~~~ 97 (161)
T 3lb5_A 18 GPGSMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKA 97 (161)
T ss_dssp -------CCCTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98743324699892564154788877799789899998888899745999953166856652478889999999999876
Q ss_pred HHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55313526669998257566863101069999523799765345577666889899999999999999
Q gi|254780780|r 81 CKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKEL 148 (155)
Q Consensus 81 l~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~~l 148 (155)
+++.++++++|+++|+|+.+||+|+|+|+|||||+++|+..+.. ....+..+.++++++||++|
T Consensus 98 l~~~~~~~~~~~~~~~g~~~g~~v~HlH~HiiPr~~~d~~~~~~----~~~~~~~~~e~~a~~lr~~l 161 (161)
T 3lb5_A 98 VKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPHN----NIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp HHHHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECTTCCC----------CCCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHC
T ss_conf 42032578988985576777730436699988986899888777----75589999999999999609
No 3
>>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} (A:286-440)
Probab=100.00 E-value=6.6e-34 Score=232.33 Aligned_cols=146 Identities=21% Similarity=0.307 Sum_probs=131.2
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCC-CEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76656658976545444688873-17877890999941788898229999415542134402788898999999730445
Q gi|254780780|r 3 EKSSTHYDNQNIFIKIIRNETNA-CRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIAC 81 (155)
Q Consensus 3 ~~s~~~~dd~CiFC~Ii~ge~p~-~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al 81 (155)
+.++..++++|+||+|++++.|. ++||||+.++||+|.+|..+||+||+||+|+.++.||+++++.+++.+++++++++
T Consensus 1 ~~~~~~~~~~C~fC~i~~~~~~~~~ii~e~~~~~~~~~~~p~~~gh~liipk~h~~~l~~l~~~~~~~l~~~~~~~~~~l 80 (155)
T 1ems_A 1 TLHINEKSSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAML 80 (155)
T ss_dssp CCCCCCCCCCSSCCEETTEECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCEECCCCEEEEECCCEEEEECCCCCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88888877875644456345056439997896699857888887518999621229925699999999999999999999
Q ss_pred HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5313526669998257566863101069999523799765345577--------666889899999999999999
Q gi|254780780|r 82 KSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHP--------TQKIENFAKLEINAQKIRKEL 148 (155)
Q Consensus 82 ~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~--------~~~~~~~~~l~~~a~~lr~~l 148 (155)
+++++++++|+++++|..+||+|+|+|+|||||+++|......+|. ..+..+.++++++++|||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~g~~v~HlH~HviPR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~klr~~l 155 (155)
T 1ems_A 81 EKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 155 (155)
T ss_dssp HHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSCC-------------------CCCHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 984299846999817823387667799999467789777422777642113320037888999999999999519
No 4
>>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} (A:)
Probab=100.00 E-value=1.6e-33 Score=229.87 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=129.2
Q ss_pred CCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 58976545444688873178778909999417888982299994155421344027888989999997304455313526
Q gi|254780780|r 9 YDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQAD 88 (155)
Q Consensus 9 ~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~ 88 (155)
.+++|+||+|++|+.|+.+||||+.++||+|++|.+|||+||+||+|++++.||+++++..++.+++++++++++.++++
T Consensus 2 ~~~~C~fC~i~~~~~~~~~i~e~e~~~~~~~~~p~~~gh~lv~pk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~ 81 (149)
T 3i4s_A 2 SLSEPAWSLHSRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCD 81 (149)
T ss_dssp -----CCCCCHHHHHHEEEEEECSSEEEEEESCTTSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCEEECCCHHHCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98786400161042082899605783899973898998999838279798054999999999999999999999971972
Q ss_pred CEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 669998257566863101069999523799765345--577666889899999999999999998840
Q gi|254780780|r 89 GIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTN--IHPTQKIENFAKLEINAQKIRKELQNFLKT 154 (155)
Q Consensus 89 ~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~--~~~~~~~~~~~~l~~~a~~lr~~l~~~l~~ 154 (155)
++|+.. .||+|+|+|+|||||+.++...... .++..+..+.+++++.+++||++|+..+..
T Consensus 82 ~~~~~~-----~g~~v~HlH~HiiPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 144 (149)
T 3i4s_A 82 KLNIAA-----LGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIWLGEGH 144 (149)
T ss_dssp EEEEEE-----CCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHH-----HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 411998-----779736346888513369988886602678887799999999999999987788885
No 5
>>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} (A:)
Probab=100.00 E-value=1.2e-32 Score=224.35 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=128.9
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66566589765454446888731787789099994178889822999941554213440278889899999973044553
Q gi|254780780|r 4 KSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKS 83 (155)
Q Consensus 4 ~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~ 83 (155)
.|++.++++|+||+|++|++ ||||+.++||+|++|.+|||+||+||+|+.++.||+++++..++.+++++++++++
T Consensus 3 ~~~~~~~~~C~fC~i~~~~i----i~e~~~~~a~~~~~p~~~gh~lvipkrHv~~~~dL~~~e~~~l~~~~~~v~~~l~~ 78 (154)
T 2oik_A 3 TRTXSFHKNCELCTTAGGEI----LWQDALCRVVHVENQDYPGFCRVILNRHVKEXSDLRPAERDHLXLVVFAVEEAVRE 78 (154)
T ss_dssp ----CCCTTCHHHHSCCSEE----EEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEE----EEECCCEEEEECCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77489995291757789808----99789599998279999867997351112303222488999989999999899987
Q ss_pred HCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13526669998257566863101069999523799765345--577666889899999999999999998840
Q gi|254780780|r 84 AFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTN--IHPTQKIENFAKLEINAQKIRKELQNFLKT 154 (155)
Q Consensus 84 ~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~--~~~~~~~~~~~~l~~~a~~lr~~l~~~l~~ 154 (155)
+++++++|+.++ ||.++|+|+|||||+.+|...... .+......+..++++.+++||++|+..+++
T Consensus 79 ~~~~~~~~~~~~-----g~~~~HlH~HiiPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 146 (154)
T 2oik_A 79 VXRPDKINLASL-----GNXTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVRLDQ 146 (154)
T ss_dssp HHCCSEEEEEEC-----CSSSCSCEEEEEEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHHHC-
T ss_pred HCCCCCHHHHHH-----CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 604421299986-----79888779999615678877885500678776685677499999999999988666
No 6
>>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 1.90A {Leishmania major} (A:1-123)
Probab=99.98 E-value=9.6e-32 Score=218.83 Aligned_cols=122 Identities=33% Similarity=0.475 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98766566589765454446888731787789099994178889822999941554213440278889899999973044
Q gi|254780780|r 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIA 80 (155)
Q Consensus 1 ~~~~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~a 80 (155)
|...+.-+++++|+||+|++++.++++||||+.++||+|.+|..|||+||+||+|+.++.||++++..+++.++++++++
T Consensus 1 m~~~~~~~~~~~C~fC~i~~~e~~~~~v~e~~~~~~~~~~~p~~~g~~lI~pk~H~~~l~dl~~~e~~~l~~~~~~~~~~ 80 (123)
T 3ksv_A 1 MAHHHHHHMAANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRA 80 (123)
T ss_dssp --------CCTTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98543265457980134425898767799799899997678899954997188776426677788999999999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 553135266699982575668631010699995237997653
Q gi|254780780|r 81 CKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASH 122 (155)
Q Consensus 81 l~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~ 122 (155)
+++.++++++|+.+|+|+.+||+|+|+|+|||||+++|+.+.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~g~~v~HlH~HiiPr~~~~~~~~ 122 (123)
T 3ksv_A 81 VAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLK 122 (123)
T ss_dssp HHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCC
T ss_pred HHHHCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC
T ss_conf 985038852899984245377775677999990136999862
No 7
>>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} (A:)
Probab=99.97 E-value=1.2e-31 Score=218.27 Aligned_cols=136 Identities=21% Similarity=0.368 Sum_probs=121.7
Q ss_pred CCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 76545444688873178778909999417888982299994155421344027888989999997304455313526669
Q gi|254780780|r 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQ 91 (155)
Q Consensus 12 ~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~n 91 (155)
+|+||+|+++. +.+||||+.++||+|++|.+|||+||+||+|+.++.||+++++..++.+++++.+++++.++++++|
T Consensus 2 ~C~fC~~~~~~--~~~i~e~~~~~v~~~~~p~~~gh~li~pk~Hv~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (147)
T 1fit_A 2 SFRFGQHLIKP--SVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLT 79 (147)
T ss_dssp CEEETTEEECG--GGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CEECCCCCCCC--CEEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52156733587--7699978999999777779984399980513498233999999999999999999999843987448
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC----------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9982575668631010699995237997653455776----------668898999999999999999
Q gi|254780780|r 92 ILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPT----------QKIENFAKLEINAQKIRKELQ 149 (155)
Q Consensus 92 i~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~----------~~~~~~~~l~~~a~~lr~~l~ 149 (155)
+++|+|+.+||+|+|+|+|||||+++|.....+.+.. ....+..+.++.+++||++|+
T Consensus 80 ~~~~~~~~~g~~v~HlH~HviPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlr~~l~ 147 (147)
T 1fit_A 80 FSXQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEXAAEAAALRVYFQ 147 (147)
T ss_dssp EEECCSGGGTCCSSSCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 98706755578866899999668778764564023566442533422026889999999999998539
No 8
>>3imi_A HIT family protein; structural genomics, infectious diseases, center for structural genomics of infectious diseases, unknown function; 2.01A {Bacillus anthracis str} (A:1-122)
Probab=99.97 E-value=9e-31 Score=212.75 Aligned_cols=120 Identities=40% Similarity=0.617 Sum_probs=115.2
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66566589765454446888731787789099994178889822999941554213440278889899999973044553
Q gi|254780780|r 4 KSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKS 83 (155)
Q Consensus 4 ~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~ 83 (155)
++-.++.++|+||+|++++.|+.+||||+.++||++.+|.+|||+||+||+|++++.||++++..+++.+++.+.+++++
T Consensus 2 ~~~~~~~~~C~fC~~~~~~~~~~iv~e~~~~~~~~~~~p~~~g~~lv~pk~h~~~l~~l~~~e~~~l~~~~~~~~~~l~~ 81 (122)
T 3imi_A 2 NAXNHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKA 81 (122)
T ss_dssp ---CCCGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 75668999893773307888755687789799998678899865999984032653338999999888899999889985
Q ss_pred HCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 1352666999825756686310106999952379976534
Q gi|254780780|r 84 AFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHT 123 (155)
Q Consensus 84 ~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~ 123 (155)
.++++++|+++|.|+.+||+++|+|+|||||+++|+.+.+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~v~HlH~HiiPr~~~d~~f~~ 121 (122)
T 3imi_A 82 EFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGA 121 (122)
T ss_dssp HHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf 1499858988606764007888989999812328888530
No 9
>>1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast collaboratory for structural genomics, secsg; 2.30A {Clostridium thermocellum} (A:)
Probab=99.97 E-value=2.7e-30 Score=209.82 Aligned_cols=121 Identities=31% Similarity=0.393 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98766566589765454446888731787789099994178889822999941554213440278889899999973044
Q gi|254780780|r 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIA 80 (155)
Q Consensus 1 ~~~~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~a 80 (155)
|+.++...++++|+||+|++++.++.+|||++.++||+|++|.+|||+||+||+|++++.||++++..+++.++++++++
T Consensus 25 ~~~~~~~~~~~~C~fC~i~~~~~~~~iv~e~~~~~a~~~~~p~~~gh~liipkrH~~~l~dL~~~e~~~l~~~~~~~~~~ 104 (147)
T 1xqu_A 25 YKKAGLXYTLENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKV 104 (147)
T ss_dssp ---------CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 33322604578892773417887756798689789998079999844998730133234220024699999999999999
Q ss_pred HHHHCCC-CCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 5531352-6669998257566863101069999523799765
Q gi|254780780|r 81 CKSAFQA-DGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNAS 121 (155)
Q Consensus 81 l~~~~~~-~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~ 121 (155)
+++.+.. +++++++|+|+.+||+|+|+|+|||||+.+|+..
T Consensus 105 l~~~~~~~~~~~~~~~~g~~~g~~v~HlH~HiiPr~~~d~~f 146 (147)
T 1xqu_A 105 AEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDXGPKI 146 (147)
T ss_dssp HHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSCCCSCC
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 998299998888987474157664475089961784467765
No 10
>>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} (A:1-118)
Probab=99.97 E-value=1.8e-30 Score=210.94 Aligned_cols=116 Identities=36% Similarity=0.594 Sum_probs=112.4
Q ss_pred CCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 65897654544468887317877890999941788898229999415542134402788898999999730445531352
Q gi|254780780|r 8 HYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87 (155)
Q Consensus 8 ~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~ 87 (155)
+++++|+||+|+++|.++.+|||++.++||++.+|.+|||+||+||+|+.++.||+++++.+++.+++.+++++++.+++
T Consensus 2 ~~~~~C~fC~~~~~e~~~~iv~e~~~~~~~~~~~p~~pg~~liipk~h~~~l~dl~~~e~~~l~~~~~~~~~~l~~~~~~ 81 (118)
T 1y23_A 2 HCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEP 81 (118)
T ss_dssp ---CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98899845745158987577987898999974688998479997344446521110578899999999999987740055
Q ss_pred CCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 666999825756686310106999952379976534
Q gi|254780780|r 88 DGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHT 123 (155)
Q Consensus 88 ~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~ 123 (155)
+++|++++.|+.+||+|+|+|+|||||+++|..+.+
T Consensus 82 ~~~~~~~~~~~~~g~~v~HlH~HiiPr~~~d~~~~~ 117 (118)
T 1y23_A 82 IGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA 117 (118)
T ss_dssp SEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE
T ss_pred CCCEEEECCCCCCCEEECEEEEEEECCCCCCCCCCC
T ss_conf 771888667742078707899999724328987553
No 11
>>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} (A:)
Probab=99.96 E-value=6.6e-30 Score=207.37 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=124.3
Q ss_pred HHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 54544468887317877890999941788898229999415542134402788898999999730445531352666999
Q gi|254780780|r 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQIL 93 (155)
Q Consensus 14 iFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~ 93 (155)
.||+|++++.|+++||||+.++||+|++|.++||+||+||+|+.++.||+++++..++.+++++++++++.++++++|+.
T Consensus 2 ~fC~i~~~~~~~~~v~e~e~~~v~~~~~p~~~gh~liipk~H~~~l~~L~~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~ 81 (149)
T 3i24_A 2 AFQLHPRLQQDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG 81 (149)
T ss_dssp CCCCCHHHHHHEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCHHHHCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 85447435027289997488299984189899899985766879805499999999999999999999988481050599
Q ss_pred EECCCCCCCEEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8257566863101069999523799765345--57766688989999999999999999884
Q gi|254780780|r 94 QFNGHAAGQTVPHLHFHVIPCKNGDNASHTN--IHPTQKIENFAKLEINAQKIRKELQNFLK 153 (155)
Q Consensus 94 ~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~--~~~~~~~~~~~~l~~~a~~lr~~l~~~l~ 153 (155)
++ ||+|+|+|+|||||+.+|..+... .++..+..+.+++++++++||++|++..+
T Consensus 82 ~~-----g~~v~HlH~HiiPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 138 (149)
T 3i24_A 82 AL-----GNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNISG 138 (149)
T ss_dssp EC-----CSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHHTTSTT
T ss_pred HH-----CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 86-----9981158999964647998888762378888659999999999999999971626
No 12
>>1kpf_A Protein kinase C interacting protein; protein kinase inhibitor, PKCI-1, HIT protein family, histidine triad protein family, nucleotidyl hydrolase; HET: AMP; 1.50A {Homo sapiens} (A:)
Probab=99.96 E-value=1.1e-29 Score=205.99 Aligned_cols=120 Identities=30% Similarity=0.386 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87665665897654544468887317877890999941788898229999415542134402788898999999730445
Q gi|254780780|r 2 KEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIAC 81 (155)
Q Consensus 2 ~~~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al 81 (155)
++.+..+.+++|+||+|++++.++.+||||+.++||++..|.+|||+||+||+|+.++.||+++++.+++.+++.+.+++
T Consensus 6 ~~~~~~~~~~~C~fC~i~~~e~~~~iv~e~~~~~~~~~~~~~~~g~~lI~pk~H~~~~~~l~~~e~~~l~~~~~~~~~~l 85 (126)
T 1kpf_A 6 AKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCA 85 (126)
T ss_dssp ----------CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEECCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 35530589999880302058877688997996999976899999019999866324564457478999999999999999
Q ss_pred HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 5313526669998257566863101069999523799765
Q gi|254780780|r 82 KSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNAS 121 (155)
Q Consensus 82 ~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~ 121 (155)
++.++++++|+.+|.|+.+||+++|+|+|||||+++|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~HlHihiiPr~~~d~~a 125 (126)
T 1kpf_A 86 ADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPP 125 (126)
T ss_dssp HHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCCSSC
T ss_pred HHHCCCCCEEEEEECCCCCCEEECEEEEEEECCCCCCCCC
T ss_conf 9848898769998678768888542089996898689996
No 13
>>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} (A:)
Probab=99.95 E-value=2e-28 Score=198.09 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCCCCCHHHHHHCCCCC--CCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65897654544468887--3178778909999417888982299994155421344027888989999997304455313
Q gi|254780780|r 8 HYDNQNIFIKIIRNETN--ACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAF 85 (155)
Q Consensus 8 ~~dd~CiFC~Ii~ge~p--~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~ 85 (155)
..+++|+||+|++++.+ ..+||||+.++||++..|..|||+||+||+|+.++.+|+++++.+|+.+++++.+++++.+
T Consensus 191 ~~~~~c~fc~i~~~~~~~~~~iv~e~~~~~a~~~~~p~~~g~~lviPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~ 270 (348)
T 1gup_A 191 AEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLF 270 (348)
T ss_dssp HHHSSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 51265127778876504554368637968999504778875589835877799077999999999999999999998625
Q ss_pred CC-CCEEEEEECCCCCCCEEEEEEEEE--EECCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52-666999825756686310106999--9523799765345577---666889899999999999999998840
Q gi|254780780|r 86 QA-DGIQILQFNGHAAGQTVPHLHFHV--IPCKNGDNASHTNIHP---TQKIENFAKLEINAQKIRKELQNFLKT 154 (155)
Q Consensus 86 ~~-~~~ni~~~~g~~~gq~V~HlH~Hi--iPR~~~d~~~~~~~~~---~~~~~~~~~l~~~a~~lr~~l~~~l~~ 154 (155)
+. +++|+++|+|+.+||+++|+|+|| +||...++........ .....+..++++.|++||++|+.++++
T Consensus 271 ~~~~~yn~~~~~~p~~g~~~~h~H~Hi~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~pe~~A~~LR~~l~~~~~~ 345 (348)
T 1gup_A 271 QCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRE 345 (348)
T ss_dssp TSCCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHHTCCEESSCHHHHHHHHHTSCSSCHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHH
T ss_conf 799986999753887788784379999984876567986424577523153026887999999998015776864
No 14
>>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} (A:)
Probab=99.92 E-value=3.5e-26 Score=184.11 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=121.2
Q ss_pred CCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56658976545444688873178778909999417888982299994155421344027888989999997304455313
Q gi|254780780|r 6 STHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAF 85 (155)
Q Consensus 6 ~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~ 85 (155)
+..|.+.|.||.+.+.+.+.++|+|++.++||++..|..|||++|+||+|+.++.+|+++++.+|..+++++.+++++.+
T Consensus 206 ~~~~~~~~~~c~~~~~~~~~riV~e~~~~~a~~~~~p~~p~~~~I~pkrh~~~~~~l~~~e~~~La~~l~~v~~~l~~~~ 285 (351)
T 1z84_A 206 TKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQL 285 (351)
T ss_dssp HHHHHHHHSSCTTTTHHHHSEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12246543632343331132147525868998546774100130356511466210999999999999999999999854
Q ss_pred CCCCEEEEEE----CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5266699982----57566863101069999523799765345577666889899999999999999
Q gi|254780780|r 86 QADGIQILQF----NGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKEL 148 (155)
Q Consensus 86 ~~~~~ni~~~----~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~~l 148 (155)
+++++|+++| +|..+||+++|+|+|||||+.++..+..+........ .+++.|++||+++
T Consensus 286 ~~~~~n~~~~~~~~~~~~~~~~~~H~HihiiPR~~~~~gfe~g~~~~~~~~---~pE~~A~~LRe~~ 349 (351)
T 1z84_A 286 NDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPV---FPEDVAKVMREVS 349 (351)
T ss_dssp TSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCCCCCHHHHHHSCCEESS---CHHHHHHHHHHCC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCEECCC---CHHHHHHHHHHHH
T ss_conf 999836899835778755688446899996378877240240147443589---9999999997213
No 15
>>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} (A:183-322)
Probab=99.90 E-value=4.1e-24 Score=171.22 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=91.7
Q ss_pred HHHCCCCCCC-EEEECC----EEEEEECCCC----CCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4446888731-787789----0999941788----8982299994155-4213440278889899999973044553135
Q gi|254780780|r 17 KIIRNETNAC-RVYEDD----ILLAIMDIMP----RNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIAIACKSAFQ 86 (155)
Q Consensus 17 ~Ii~ge~p~~-~v~E~d----~~~afld~~P----~~~GH~lViPk~H-~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~ 86 (155)
+|++|++|+. ++|||+ .++||+|++| ..|||+|||||+| ++++.||+++++..++.+++++++++++.++
T Consensus 7 kii~~~~~~~~ii~ed~~~~~~~v~f~D~~p~~~p~~~gH~LViPk~h~v~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~ 86 (140)
T 1vlr_A 7 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ 86 (140)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88617766541798579987887992455668875211589999866888872668686899999999999999999839
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 266699982575668631010699995237997653
Q gi|254780780|r 87 ADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASH 122 (155)
Q Consensus 87 ~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~ 122 (155)
++++++ ++|..+||+|+|+|+|||||+..++...
T Consensus 87 ~~~~~~--~~g~~agq~v~HlHiHiipr~~~~~~~~ 120 (140)
T 1vlr_A 87 VTGDRL--RVYLHYLPSYYHLHVHFTALGFEAPGSG 120 (140)
T ss_dssp CCGGGE--EEEEESSCSSSSCEEEEEETTSCCTTCB
T ss_pred CCHHHE--EEEEECCCCCCCEEEEEEECCCCCCCCC
T ss_conf 986787--9998069974546999973357787642
No 16
>>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} (A:136-275)
Probab=99.90 E-value=4.5e-24 Score=170.97 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=90.9
Q ss_pred CCHHHHHHCCCCCCCEEEECCEEEEEECCCC----CCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7654544468887317877890999941788----8982299994155-4213440278889899999973044553135
Q gi|254780780|r 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMP----RNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIAIACKSAFQ 86 (155)
Q Consensus 12 ~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P----~~~GH~lViPk~H-~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~ 86 (155)
+|++|++.........+||||.++||+|++| .+|||+|||||+| ++++.||+++++..++.+++.+++++++.++
T Consensus 7 kii~~~~~~~~v~~~~~~e~e~~~af~D~~P~~~~~~~gH~LViPk~h~i~~l~dl~~~~~~~l~~~~~~~~~~l~~~~~ 86 (140)
T 3bl9_A 7 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYR 86 (140)
T ss_dssp HHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98637776542798569988887994346778873025699999776898982778898999999999999999999609
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 266699982575668631010699995237997653
Q gi|254780780|r 87 ADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASH 122 (155)
Q Consensus 87 ~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~ 122 (155)
++++++. +|..+||+|+|+|+|||||+..+....
T Consensus 87 ~~~~~~~--~g~~~g~~v~HlH~Hvipr~~~~~~~~ 120 (140)
T 3bl9_A 87 MKGDHLR--VYLHYLPSYYHLHVHFTALGFEAPGSG 120 (140)
T ss_dssp CCGGGEE--EEEESSCSSSSCEEEEEETTSCCTTCB
T ss_pred CCHHHEE--EEEECCCCCCEEEEEEEECCCCCCCCC
T ss_conf 9801179--999289983117999984467888640
No 17
>>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} (A:)
Probab=98.21 E-value=2.1e-05 Score=54.48 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=84.0
Q ss_pred CCCCCCCHHHHHHCCCCCCC-EEE----ECCEEEEEECCCCCCC----------------------CEEEEE-ECCCCCH
Q ss_conf 66589765454446888731-787----7890999941788898----------------------229999-4155421
Q gi|254780780|r 7 THYDNQNIFIKIIRNETNAC-RVY----EDDILLAIMDIMPRNP----------------------GHVLII-PKSRIRD 58 (155)
Q Consensus 7 ~~~dd~CiFC~Ii~ge~p~~-~v~----E~d~~~afld~~P~~~----------------------GH~lVi-Pk~H~~~ 58 (155)
..+++.|.||.=...+.|.. ..+ ++-.+.+|-+.+|... .|.+|| -..|...
T Consensus 57 ~~~~~~CPFC~g~e~~~~~~~~~~~~~~~~~~~~v~~N~fPal~~~~~~~~~~~~~~~~~~~~~~g~~~VIv~s~~h~~~ 136 (351)
T 1z84_A 57 NPKPSSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQ 136 (351)
T ss_dssp ----CCCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCC
T ss_conf 89977798998963458975433445689825998078875456665665567777740013216774038977644666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf 34402788898999999730445531352666999825756686310106999952
Q gi|254780780|r 59 IFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPC 114 (155)
Q Consensus 59 l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR 114 (155)
+.+++.+....++...+...+.+.+--+..-+.+..|.|+.+|.+.+|.|..++.-
T Consensus 137 ~~~~~~~~~~~vl~~~~~r~~~l~~~~~~~yv~~fkN~g~~aG~Sl~HpH~Qi~~~ 192 (351)
T 1z84_A 137 LSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMAL 192 (351)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCCCCCCCCHHEECC
T ss_conf 11299999999999999999998628885189864103132386767762211037
No 18
>>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} (A:)
Probab=97.91 E-value=0.00017 Score=48.80 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCC---------------------CCEEEEE-ECCCCCHHHH
Q ss_conf 66566589765454446888731787789099994178889---------------------8229999-4155421344
Q gi|254780780|r 4 KSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRN---------------------PGHVLII-PKSRIRDIFE 61 (155)
Q Consensus 4 ~s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~---------------------~GH~lVi-Pk~H~~~l~d 61 (155)
+....++..|.||.-.... +..+..+.-.+.+|-+.+|.. -.|.+|| ...|..++.+
T Consensus 43 ~~~~~~~~~cpfc~g~e~~-~~~~~~~~~~~~v~~n~~p~l~~~~~~~~~~~~~~~~~~~~~g~~~Vii~~~~h~~~~~~ 121 (348)
T 1gup_A 43 QVLPAHDPDCFLCAGNVRV-TGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPE 121 (348)
T ss_dssp SCCCSCCTTCTTSTTCBCT-TSCBCCCCSSCEEEECTTCSCCTTCCCCCCCCCSSSCEEECCEEEEEEESCSCTTCCGGG
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCC
T ss_conf 6676778999999997455-898688877258981788543567766654455434403557268876306652224100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf 0278889899999973044553135266699982575668631010699995
Q gi|254780780|r 62 APPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113 (155)
Q Consensus 62 L~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiP 113 (155)
++.+.+..++.........+.+.+. -+.+..|.|+.+|-++.|.|..++-
T Consensus 122 ~~~~~~~~~~~~~~~r~~~l~~~~~--yv~~f~N~g~~aG~Sl~HpH~Qi~~ 171 (348)
T 1gup_A 122 LSVAALTEIVKTWQEQTAELGKTYP--WVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCS--EEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 7699999999999999997435765--7899864370137566667411531
No 19
>>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis, structural genomics; 1.40A {Escherichia coli O157} (A:)
Probab=96.91 E-value=0.0021 Score=42.01 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCCHHHHHHCCC-CCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHH--H----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976545444688-873178778909999417888982299994155421344--0----27888989999997304455
Q gi|254780780|r 10 DNQNIFIKIIRNE-TNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFE--A----PPEILSQIAFLIKKIAIACK 82 (155)
Q Consensus 10 dd~CiFC~Ii~ge-~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~d--L----~~~~~~~l~~~~~~v~~al~ 82 (155)
++.|+.-.-.+|. .|+..|-.+..+++|.|+ .-|-|.|++|-..++.+++ | ++..+..-+..-..++..+.
T Consensus 15 ~~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qyLLiPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g 92 (227)
T 2pof_A 15 LEECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQYLLXPTYRINGTESPLLTDPSTPNFFWLAWQARDFXSKKYG 92 (227)
T ss_dssp HHTHHHHHHHHSCCTTSSEEETTTTEEEEECS--SSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHT
T ss_pred HHHCCCHHHCCCCCCCCEEEECCCCEEEECCC--CCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 54217704323899998067068996998379--9883278840555467538413278985089999987278889748
Q ss_pred HHCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 313526669998257566863101069999
Q gi|254780780|r 83 SAFQADGIQILQFNGHAAGQTVPHLHFHVI 112 (155)
Q Consensus 83 ~~~~~~~~ni~~~~g~~~gq~V~HlH~Hii 112 (155)
+.+..+.+.+.+|. ..|-+-.|||+||=
T Consensus 93 ~~ipd~~isLaINS--~~gRSQnQLHIHIs 120 (227)
T 2pof_A 93 QPVPDRAVSLAINS--RTGRTQNHFHIHIS 120 (227)
T ss_dssp SCCCGGGEEEEEBC--GGGCSCCSCCEEEE
T ss_pred CCCCHHHEEEEECC--CCCCCCCCEEEEHH
T ss_conf 98985572577437--66766241577632
No 20
>>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} (A:)
Probab=60.52 E-value=11 Score=18.79 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCEE
Q ss_conf 890999941788898229999415542134402788898999999---7304455313526669
Q gi|254780780|r 31 DDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIK---KIAIACKSAFQADGIQ 91 (155)
Q Consensus 31 ~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~---~v~~al~~~~~~~~~n 91 (155)
--.+.+|.+-+|..+|+.+++.++.+.++..| +.++...++ -+..++++.|.++|..
T Consensus 15 ~k~I~v~rNGD~~~~g~~i~i~~~~~~s~~~l----L~~lt~~l~~~~~l~~~VR~lyt~~G~~ 74 (113)
T 1mg4_A 15 AKKVRFYRNGDRYFKGIVYAISPDRFRSFEAL----LADLTRTLSDNVNLPQGVRTIYTIDGLK 74 (113)
T ss_dssp SEEEEEEETTCSSCCCEEEEECTTTCSSHHHH----HHHHHHHHCCSSSSTTCCCEEEETTSSC
T ss_pred CEEEEEEECCCCCCCCEEEEECCCCCCCHHHH----HHHHHHHHCCCCCCCCCCEEEECCCCCE
T ss_conf 50899996999899989999897545899999----9999998610469986515998489983
No 21
>>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} (A:)
Probab=56.20 E-value=14 Score=18.08 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=39.5
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCEEEEE
Q ss_conf 0999941788898229999415542134402788898999999---7304455313526669998
Q gi|254780780|r 33 ILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIK---KIAIACKSAFQADGIQILQ 94 (155)
Q Consensus 33 ~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~---~v~~al~~~~~~~~~ni~~ 94 (155)
.+.+|.+-.|..+|..+++.++.+.++..| +.++...++ -+..++++.+.++|...+.
T Consensus 12 ~I~v~rNGD~~~~g~~~~i~~~~~~t~d~l----L~~lt~~l~~~~~l~~~Vr~lyT~~G~~~V~ 72 (116)
T 1uf0_A 12 KVRFYRNGDRYFKGIVYAISPDRFRSFEAL----LADLTRTLSDNVNLPQGVRTIYTIDGLKKIS 72 (116)
T ss_dssp EEEEEETTCSSCCCEEEEECTTTCCSHHHH----HHHHHHHSCCSSSCSSCCCEEEESSSSCEEC
T ss_pred EEEEEECCCCCCCCEEEEECCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
T ss_conf 899985999899989999896424899999----9999998711478987724998699980858
No 22
>>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} (A:)
Probab=50.07 E-value=7.8 Score=19.74 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=38.4
Q ss_pred ECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7890999941788898229999415542134402788898999999730445531352666999
Q gi|254780780|r 30 EDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQIL 93 (155)
Q Consensus 30 E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~ 93 (155)
.--.+.+|.+-.|..+|..++++++.+.++..| +.++...+.--.-++++.|..+|--|.
T Consensus 13 ~~k~i~v~rNGd~~~~~~~v~i~~~~~~s~~~l----L~~~t~~l~l~~gaVr~lyt~~G~~v~ 72 (108)
T 2dnf_A 13 EPCTIFLIANGDLINPASRLLIPRKTLNQWDHV----LQMVTEKITLRSGAVHRLYTLEGKLVE 72 (108)
T ss_dssp CCEEEEECBTTCSSSCCEEEEECHHHHTCHHHH----HHHHHHHCCCTTSSCCEEEETTCCEES
T ss_pred CCEEEEEEECCCCCCCCEEEEECCCCCCCHHHH----HHHHHHHCCCCCCCEEEEECCCCCEEC
T ss_conf 972999996999899988999896534799999----999986418998857899868998907
No 23
>>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} (A:1-223)
Probab=32.83 E-value=37 Score=15.54 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=43.6
Q ss_pred CCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEE-EECCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9765454446888731787789099994178889822999-941554213440--2788898999999730445531352
Q gi|254780780|r 11 NQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLI-IPKSRIRDIFEA--PPEILSQIAFLIKKIAIACKSAFQA 87 (155)
Q Consensus 11 d~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lV-iPk~H~~~l~dL--~~~~~~~l~~~~~~v~~al~~~~~~ 87 (155)
+.-.|..+.+|..|..--..... -....+..+|.=|+ -|=+-+.-+..+ +......+..++..+...+.+-...
T Consensus 51 ~~~~f~~l~~g~~p~~g~~~~~~---~~~~~~~~~g~DlTFs~PKsvSil~~~~~d~~i~~a~~~Av~~~l~~le~~~~~ 127 (223)
T 1omh_A 51 DSKRFRELLAGNIGEGHRIXRSA---TRQDSKERIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEARAQA 127 (223)
T ss_dssp CHHHHHHHHHTCCCSSCCCSCTT---SCTTSCCEEEEEEEEECCHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHCCCCCCCHHHHHCC---CCCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 79999999669899942332113---567888520677787589459999884797999999999999999999876457
Q ss_pred ----CCEE---------EEEECCCCCCCEEEEEEEEEEE
Q ss_conf ----6669---------9982575668631010699995
Q gi|254780780|r 88 ----DGIQ---------ILQFNGHAAGQTVPHLHFHVIP 113 (155)
Q Consensus 88 ----~~~n---------i~~~~g~~~gq~V~HlH~HiiP 113 (155)
+|-+ +....-...-.--||+|.|++=
T Consensus 128 ~~~~~g~~~~~~~~~l~~a~~~H~~sR~~DP~lH~H~vv 166 (223)
T 1omh_A 128 RQKIQGKTRIETTGNLVIGKFRHETSRERDPQLHTHAVI 166 (223)
T ss_dssp EEEETTEEEEEECCCCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred EECCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 975699068752687799998768777789861356888
No 24
>>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} (A:155-257)
Probab=24.04 E-value=53 Score=14.57 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=34.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 523799765345577666889899999999999999998840
Q gi|254780780|r 113 PCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKELQNFLKT 154 (155)
Q Consensus 113 PR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~~l~~~l~~ 154 (155)
||......+..+..+..+.-+...|++.|.++-..|-++|..
T Consensus 28 ~~~~~~d~SLs~Vp~~Hp~l~~~~Le~Ea~~ll~~LL~~l~~ 69 (103)
T 3gs3_A 28 SLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGT 69 (103)
T ss_dssp SCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 777877761875799998378999999999999999974157
No 25
>>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} (A:1-151,A:271-301)
Probab=21.34 E-value=60 Score=14.24 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=30.1
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 4155421344027888989999997304455313526669
Q gi|254780780|r 52 PKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQ 91 (155)
Q Consensus 52 Pk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~n 91 (155)
+.+|.-++.|++.+++..++..+..+.+.-+..-.-.|-+
T Consensus 8 ~~kh~l~~~dls~~ei~~ll~~A~~lk~~~~~~~~L~gk~ 47 (182)
T 2ef0_A 8 LPKDLLDFSGYGPKELQALLDLAEQLKRERYRGEDLKGKV 47 (182)
T ss_dssp CCSCBSSSTTCCHHHHHHHHHHHHHHHHHTCCCCTTTTCE
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 7747486232999999999999999874633576578988
Done!