HHsearch results for GI: 254780780 and protein with PDBid: 1vlr_A
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.17 E-value=2e-05 Score=53.71 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred HHHCCC-CCCCEEEEC----CEEEEEECCC----CCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 444688-873178778----9099994178----88982299994155-4213440278889899999973044553135
Q gi|254780780|r 17 KIIRNE-TNACRVYED----DILLAIMDIM----PRNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIAIACKSAFQ 86 (155)
Q Consensus 17 ~Ii~ge-~p~~~v~E~----d~~~afld~~----P~~~GH~lViPk~H-~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~ 86 (155)
.|+.+. +.-++|||| +.|+.+.|.+ +...-|+|+|++++ +.++.||..+...-|-.+..+..+++.+.++
T Consensus 189 NIL~~~~E~erviy~d~d~~~GFvllpD~KWD~~~~~~LylLaIv~r~dI~SLRDL~~~HlplL~~m~~~~~~~i~~kY~ 268 (350)
T 1vlr_A 189 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ 268 (350)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98607765542698469988887990456658877546689999845888884767786899999999999999999859
Q ss_pred --CCCEEEEEECCCCCCCEEEEEEEEEEECCCCCC
Q ss_conf --266699982575668631010699995237997
Q gi|254780780|r 87 --ADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDN 119 (155)
Q Consensus 87 --~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~ 119 (155)
.+.+.+..+-.| +..|||+|++......+
T Consensus 269 i~~d~lRly~HYqP----SyYHlHvHiv~v~~~~~ 299 (350)
T 1vlr_A 269 VTGDRLRVYLHYLP----SYYHLHVHFTALGFEAP 299 (350)
T ss_dssp CCGGGEEEEEESSC----SSSSCEEEEEETTSCCT
T ss_pred CCHHHEEEEEECCC----CCCCEEEEEEECCCCCC
T ss_conf 98678899981599----74316999984356787