HHSEARCH alignment of GI: 254780780 and SCOP domain: d1emsa1

Alignment
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=100.00  E-value=1.7e-36  Score=246.05  Aligned_cols=138  Identities=22%  Similarity=0.351  Sum_probs=122.5

Q ss_pred             CCCHHHHHHCCCCCCC-EEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9765454446888731-787789099994178889822999941554213440278889899999973044553135266
Q gi|254780780|r   11 NQNIFIKIIRNETNAC-RVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADG   89 (155)
Q Consensus        11 d~CiFC~Ii~ge~p~~-~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~   89 (155)
                      -+|.||+|.++|+|+. +||||+.++||+|++|.+|||+|||||+|+.++.||+++++.+++.+++++++++++.++++|
T Consensus        14 ~~~~~~~~~~~eiP~~~ii~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g   93 (160)
T d1emsa1          14 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTS   93 (160)
T ss_dssp             CCSSCCEETTEECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             CCCCCCEECCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             65677658087577465899679799998789999974899986032224554467899999887776556554036634


Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6999825756686310106999952379976534557--------7666889899999999999999
Q gi|254780780|r   90 IQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIH--------PTQKIENFAKLEINAQKIRKEL  148 (155)
Q Consensus        90 ~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~--------~~~~~~~~~~l~~~a~~lr~~l  148 (155)
                      +|+++|+|+.+||+|+|+|+|||||+++|......++        +.....+.++|++.|.+||+.|
T Consensus        94 ~ni~~n~G~~aGq~V~HlHiHIIPR~~~D~~~~~~~~~~~~~~~~~~~~~~s~eel~~eA~~lR~~l  160 (160)
T d1emsa1          94 TTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM  160 (160)
T ss_dssp             EEEECCCSGGGTCCSSSCCEEEEEECSSCC-------------------CCCHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             7872156788880773789999777578765321444330034220027661999999999999529


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]