HHSEARCH alignment of GI: 254780780 and SCOP domain: d1vlra1

Alignment
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.17  E-value=1.6e-10  Score=83.98  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             CCHHHHHHCCCCCCCEEEECCE----EEEEECCC----CCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7654544468887317877890----99994178----88982299994155-421344027888989999997304455
Q gi|254780780|r   12 QNIFIKIIRNETNACRVYEDDI----LLAIMDIM----PRNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIAIACK   82 (155)
Q Consensus        12 ~CiFC~Ii~ge~p~~~v~E~d~----~~afld~~----P~~~GH~lViPk~H-~~~l~dL~~~~~~~l~~~~~~v~~al~   82 (155)
                      +=+++-|-.+.++.++||||+.    |+.+.|.+    |...-|+|+|||+| +.++.||.++...-|..+.....+++.
T Consensus        28 ~Wv~nIL~~~~E~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~  107 (192)
T d1vlra1          28 QWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAIL  107 (192)
T ss_dssp             HHHHHHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             78999872777654169847998877799356666888555769999976689898487888699999999999999999


Q ss_pred             HH--CCCCCEEEEEECCCCCCCEEEEEEEEEEECCCC
Q ss_conf             31--352666999825756686310106999952379
Q gi|254780780|r   83 SA--FQADGIQILQFNGHAAGQTVPHLHFHVIPCKNG  117 (155)
Q Consensus        83 ~~--~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~  117 (155)
                      +.  ..++++.++++.+    ++++|||+||+.....
T Consensus       108 ~~~gi~~~~~Rig~H~~----PSv~HLHlHvi~~~~~  140 (192)
T d1vlra1         108 KRYQVTGDRLRVYLHYL----PSYYHLHVHFTALGFE  140 (192)
T ss_dssp             HHHCCCGGGEEEEEESS----CSSSSCEEEEEETTSC
T ss_pred             HHHCCCHHHEEEEEECC----CCEEEEEEEEEECCCC
T ss_conf             97099735459999799----9880037899851678


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]