RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein
[Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.
          Length = 119

 Score = 64.9 bits (158), Expect = 9e-12
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 12  QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
           + IF KIIR E  +  VY+D+++ A  DI P+ P H+LIIP   I  + +   E      
Sbjct: 4   ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAE---HEQ 60

Query: 72  FLIKKIAIACKSAFQA----DGIQILQFNGHAAGQTVPHLHFHVI 112
            L + I +A K A Q     DG +++       GQ V H+H H++
Sbjct: 61  ALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLL 105


>gnl|CDD|152404 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
           This family consists of several scavenger mRNA decapping
           enzymes (DcpS) and is the C-terminal region. DcpS is a
           scavenger pyrophosphatase that hydrolyses the residual
           cap structure following 3' to 5' decay of an mRNA. The
           association of DcpS with 3' to 5' exonuclease exosome
           components suggests that these two activities are linked
           and there is a coupled exonucleolytic decay-dependent
           decapping pathway. The C-terminal domain contains a
           histidine triad (HIT) sequence with three histidines
           separated by hydrophobic residues. The central histidine
           within the DcpS HIT motif is critical for decapping
           activity and defines the HIT motif as a new mRNA
           decapping domain, making DcpS the first member of the
           HIT family of proteins with a defined biological
           function.
          Length = 113

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 14  IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
           +F  II  E     VYEDD  +A  DI P+ P H+L+IPK  I+ + +   E L  +  +
Sbjct: 3   VFCIIINGEEPERIVYEDDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLGHM 62

Query: 74  IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVI 112
            +      K  +      +L+   H  G +V HLH HVI
Sbjct: 63  REVAKKIAKEKYNEGYRDVLRLGFH-YGPSVYHLHLHVI 100


>gnl|CDD|182570 PRK10586, PRK10586, putative oxidoreductase; Provisional.
          Length = 362

 Score = 30.8 bits (70), Expect = 0.14
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 54  SRIRDIFEAPPEILSQIAFLIKKIAIACK-----SAFQADGIQILQFNGHAAGQTVPHL 107
             + D F    E LS+  ++  + AIA        AF+  G + + F GH +   V  L
Sbjct: 23  DHLHDFF--TDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQL 79


>gnl|CDD|129313 TIGR00209, galT_1, galactose-1-phosphate uridylyltransferase,
           family 1.  This enzyme is involved in glucose and
           galactose interconversion. This model describes one of
           two extremely distantly related branches of the model
           pfam01087 from PFAM.
          Length = 347

 Score = 30.7 bits (69), Expect = 0.17
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 45  PGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQAD-----GIQILQFNGHA 99
           P   L++PK+ +  I +      S +A ++KK+     + F+       G     FNG  
Sbjct: 230 PFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEE 289

Query: 100 AGQTVPHLHFH 110
                 H HF+
Sbjct: 290 NQHWQLHAHFY 300


>gnl|CDD|131798 TIGR02751, PEPCase_arch, phosphoenolpyruvate carboxylase, archaeal
           type.  This family is the archaeal-type
           phosphoenolpyruvate carboxylase, although not every host
           species is archaeal. These sequences bear little
           resemblance to the bacterial/eukaryotic type. The
           members from Sulfolobus solfataricus and
           Methanothermobacter thermautotrophicus were verified
           experimentally, while the activity is known to be
           present in a number of other archaea.
          Length = 506

 Score = 29.7 bits (67), Expect = 0.36
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 33  ILLAIMDIMPRNPGHVLIIPKSRIRDIFEA-------PPEILSQIAFLIKKIAIACKSAF 85
           +LL  ++ +PRN          RI  IFE          EIL+ +    +K     +S  
Sbjct: 97  LLLETLESIPRNYDVAREFYDERIAPIFEVILPMTTSADEILN-VHQYYEKAVAGKQSIE 155

Query: 86  QADGIQILQFNG 97
             D + + ++ G
Sbjct: 156 LYDEVTVKEWLG 167


>gnl|CDD|178650 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate
           guanyltransferase; Provisional.
          Length = 403

 Score = 28.1 bits (63), Expect = 1.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 46  GHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQI-LQFNGHAAGQTV 104
           GHVL++P+     + +  P+ +   +FL+     A   A +A+     + +N   A  T+
Sbjct: 183 GHVLLVPR-----VLDCLPQRIDPDSFLL-----ALYMAAEANNPYFRVGYNSLGAFATI 232

Query: 105 PHLHFH 110
            HLHF 
Sbjct: 233 NHLHFQ 238


>gnl|CDD|165505 PHA03246, PHA03246, large tegument protein UL36; Provisional.
          Length = 3095

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 32   DILLAIMDIMPRNPGHVLIIPKSRIRD--------IFEAPPEILSQIAFL 73
            D+++ IM   P   GHVL   K  + +        ++    + +S +AF+
Sbjct: 2163 DVMVTIMACTP---GHVLTFSKLDLINQYDFMDKTLYNVLTDSISTVAFV 2209


>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
           Provisional.
          Length = 319

 Score = 27.0 bits (60), Expect = 2.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 13/44 (29%)

Query: 33  ILLAIMDIMPRNPGHVLIIP--KSRIRDIFEAPPEILSQIAFLI 74
           ++LAIM           IIP   + +RD+FE  P ++ + A+ I
Sbjct: 175 VILAIM-----------IIPYIAAVMRDVFEQTPVMMKESAYGI 207


>gnl|CDD|182329 PRK10245, adrA, diguanylate cyclase AdrA; Provisional.
          Length = 366

 Score = 26.3 bits (58), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 18  IIRNETNACRVYEDDILLAIMDI 40
           ++RNE + CR +  D  L I+DI
Sbjct: 222 LLRNEFDNCRRHHRDATLLIIDI 244


>gnl|CDD|163375 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein,
           AFUA_2G17970 family.  This family consists of fungal
           proteins of unknown function associated with secondary
           metabolite biosynthesis, such as of the ergot alkaloids
           such as ergovaline. Nomenclature differs because gene
           order differs - this is EasG in Neotyphodium lolii but
           is designated ergot alkaloid biosynthetic protein A in
           several other fungi.
          Length = 285

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 53  KSRIRDIFEAPPEILSQIAFLIKKIAIACKSA---FQADGIQILQFNGHAAGQTVPHLHF 109
           +  I  ++   P I      +IK I  A       F      I++  G A GQ   H H 
Sbjct: 65  EPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQV--HAHL 122

Query: 110 HVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKE 147
             +         +T + PT  +ENF   E + + IRKE
Sbjct: 123 DSL-----GGVEYTVLRPTWFMENF-SEEFHVEAIRKE 154


>gnl|CDD|148079 pfam06254, DUF1019, Protein of unknown function (DUF1019).
          Family of uncharacterized proteins found in
          Proteobacteria.
          Length = 88

 Score = 25.8 bits (57), Expect = 4.7
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
          Q IF + +  +T A R     ++ AI+  +P      L    S +  +  A  E+     
Sbjct: 11 QKIF-RWLDGDTKAAREKVQALIPAILAALPPELRARLTSGDSTMYLLALAEKELSEAKE 69

Query: 72 FLI 74
           ++
Sbjct: 70 AVL 72


>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein.  This model
           describes a protein family of unknown function, about
           690 residues in length, in which some members show
           C-terminal sequence similarity to Pfam model pfam05362,
           which is the Lon protease C-terminal proteolytic domain,
           from MEROPS family S16. However, the annotated catalytic
           sites of E. coli Lon protease are not conserved in
           members of this family. Members have a motif
           GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
           GxxGxGK[ST].
          Length = 675

 Score = 24.8 bits (54), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 50  IIPKSRIRDIFEAPPEILS--QIAFLIKKIAIACKS 83
           +IP S  RDI   P E+ S  QI+F    +    K+
Sbjct: 636 LIPMSSARDIPTVPAELFSKFQISFYSDPVDAVYKA 671


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,501,564
Number of extensions: 150782
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 19
Length of query: 155
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 70
Effective length of database: 4,157,793
Effective search space: 291045510
Effective search space used: 291045510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)