RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus str. psy62] (155 letters) >d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139 Score = 95.0 bits (235), Expect = 2e-21 Identities = 45/135 (33%), Positives = 66/135 (48%) Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73 IF KII + + +VYED+ +LA +DI GH L+IPK+ I +++E E+ Q Sbjct: 4 IFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHA 63 Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIEN 133 + KIA A + F+ G+ L NG AGQ+V H H H+IP + Sbjct: 64 VPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYK 123 Query: 134 FAKLEINAQKIRKEL 148 L+ + I K L Sbjct: 124 PEDLQNISSSIAKRL 138 >d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Score = 95.2 bits (236), Expect = 2e-21 Identities = 36/101 (35%), Positives = 49/101 (48%) Query: 13 NIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAF 72 IF KIIR E A ++EDD LA DI P+ P H L+IPK I I A + S + Sbjct: 2 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGH 61 Query: 73 LIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113 L+ G +++ G GQ+V H+H HV+ Sbjct: 62 LMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 102 >d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113 Score = 84.9 bits (209), Expect = 3e-18 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73 +F KII+ E + YED+ ++AI DI P P HVLIIPK I ++ E + + Sbjct: 5 VFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDI 64 Query: 74 IKKIA-IACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113 K +A G +++ G AAGQTV HLH+H++ Sbjct: 65 HKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLG 105 >d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160 Score = 83.0 bits (204), Expect = 1e-17 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 9/147 (6%) Query: 11 NQNIFIKIIRNETNACRV-YEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQ 69 ++ +K R A + Y +++ P GHVL+ PK + + + + Sbjct: 14 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETAD 73 Query: 70 IAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA--------S 121 + + KK+ + I +G AGQTVPH+H H++P + GD + Sbjct: 74 LFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLA 133 Query: 122 HTNIHPTQKIENFAKLEINAQKIRKEL 148 + P +K + ++ A R + Sbjct: 134 SHDKEPERKPRSNEQMAEEAVVYRNLM 160 >d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Score = 81.8 bits (201), Expect = 2e-17 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Query: 28 VYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87 + ++ A+++ P PGHVL+ P + + P+ ++ + +++ + F Sbjct: 15 FLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHG 74 Query: 88 DGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPT----------QKIENFAKL 137 + +G AGQTV H+H HV+P K GD + +I+ + ++ Sbjct: 75 TSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEM 134 Query: 138 EINAQKIRKELQ 149 A +R Q Sbjct: 135 AAEAAALRVYFQ 146 >d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139 Score = 72.2 bits (176), Expect = 2e-14 Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 11/142 (7%) Query: 9 YDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILS 68 + E +++D + + PG +I ++++ + P Sbjct: 2 FHKNCELCTTAGGEI----LWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERD 57 Query: 69 QIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNI--H 126 + ++ + A + + ++ + N + G PH+H+HVIP D ++ Sbjct: 58 HLMLVVFAVEEAVR-----EVMRPDKINLASLGNMTPHVHWHVIPRFKRDRHFPNSVWGE 112 Query: 127 PTQKIENFAKLEINAQKIRKEL 148 ++ A + + ++K + Sbjct: 113 TKRESLPQALDQGSTTALKKAI 134 >d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Score = 65.5 bits (159), Expect = 2e-12 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 11 NQNIFIKIIRNE--TNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILS 68 + + ++ E + V E + LA++ P L++PK+ + I + S Sbjct: 17 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRS 76 Query: 69 QIAFLIKKIAIACKSAFQADGIQILQFNGHAAG---QTVPHLHFHVIP 113 +A +KK+ + FQ + ++G LH H P Sbjct: 77 DLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 124 >d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156 Score = 62.1 bits (150), Expect = 2e-11 Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 9/117 (7%) Query: 3 EKSSTHYDNQN--IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60 + + +++ + + E +++ P + IIPK Sbjct: 9 DGTKDYFEETGKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFH 65 Query: 61 EAPPEILSQIAFLIKKIAIACKSAFQADG----IQILQFNGHAAGQTVPHLHFHVIP 113 + L+K + I + H ++P Sbjct: 66 HLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP 122 >d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192 Score = 41.3 bits (97), Expect = 4e-05 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 17/101 (16%) Query: 28 VYEDD------ILLAIM--DIMPRNPGHVLIIPKSR----IRDIFEAPPEILSQIAFLIK 75 V+E+ +L+ + + + +++ I R +RD+ +L I + Sbjct: 44 VFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQ 103 Query: 76 KIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKN 116 + I + D +++ + HLH H Sbjct: 104 EA-ILKRYQVTGDRLRV----YLHYLPSYYHLHVHFTALGF 139 >d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Score = 25.6 bits (56), Expect = 1.8 Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 18 IIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71 + E ++ + + +L ++ +P G LI R IFE P + ++ Sbjct: 177 VCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHLQERVD 230 >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Length = 270 Score = 24.6 bits (53), Expect = 4.0 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%) Query: 91 QILQFNGHAAGQTVPHLHFHVIPCKNGDN 119 + ++G T PH+HF + G Sbjct: 232 DQIAYSGSTGNSTAPHVHFQRM--SGGIG 258 >d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus [TaxId: 1280]} Length = 299 Score = 24.5 bits (53), Expect = 4.0 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%) Query: 75 KKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHV-IPCKNGDNASHTNIHPTQKIEN 133 K + + G N + + ++V I ++ D+ + + P + E Sbjct: 48 KDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEE 107 Query: 134 F 134 F Sbjct: 108 F 108 >d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 173 Score = 24.7 bits (53), Expect = 4.2 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 11/72 (15%) Query: 41 MPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAA 100 P + + I I DI A +I + + +I IQ+ + G +A Sbjct: 108 SPVHSIQLSDIDPVGIGDILIA---YKKRINQIAQHDSINY--------IQVFKNQGASA 156 Query: 101 GQTVPHLHFHVI 112 G ++ H H ++ Sbjct: 157 GASMSHSHSQMM 168 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0608 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 598,585 Number of extensions: 27326 Number of successful extensions: 106 Number of sequences better than 10.0: 1 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 22 Length of query: 155 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,336,656 Effective search space: 102922512 Effective search space used: 102922512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (22.9 bits)