RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein
[Candidatus Liberibacter asiaticus str. psy62]
(155 letters)
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 95.0 bits (235), Expect = 2e-21
Identities = 45/135 (33%), Positives = 66/135 (48%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
IF KII + + +VYED+ +LA +DI GH L+IPK+ I +++E E+ Q
Sbjct: 4 IFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHA 63
Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIEN 133
+ KIA A + F+ G+ L NG AGQ+V H H H+IP +
Sbjct: 64 VPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYK 123
Query: 134 FAKLEINAQKIRKEL 148
L+ + I K L
Sbjct: 124 PEDLQNISSSIAKRL 138
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 95.2 bits (236), Expect = 2e-21
Identities = 36/101 (35%), Positives = 49/101 (48%)
Query: 13 NIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAF 72
IF KIIR E A ++EDD LA DI P+ P H L+IPK I I A + S +
Sbjct: 2 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGH 61
Query: 73 LIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
L+ G +++ G GQ+V H+H HV+
Sbjct: 62 LMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 102
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 84.9 bits (209), Expect = 3e-18
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
+F KII+ E + YED+ ++AI DI P P HVLIIPK I ++ E + +
Sbjct: 5 VFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDI 64
Query: 74 IKKIA-IACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
K +A G +++ G AAGQTV HLH+H++
Sbjct: 65 HKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLG 105
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 83.0 bits (204), Expect = 1e-17
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 11 NQNIFIKIIRNETNACRV-YEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQ 69
++ +K R A + Y +++ P GHVL+ PK + + + +
Sbjct: 14 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETAD 73
Query: 70 IAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA--------S 121
+ + KK+ + I +G AGQTVPH+H H++P + GD +
Sbjct: 74 LFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLA 133
Query: 122 HTNIHPTQKIENFAKLEINAQKIRKEL 148
+ P +K + ++ A R +
Sbjct: 134 SHDKEPERKPRSNEQMAEEAVVYRNLM 160
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 81.8 bits (201), Expect = 2e-17
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 28 VYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87
+ ++ A+++ P PGHVL+ P + + P+ ++ + +++ + F
Sbjct: 15 FLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHG 74
Query: 88 DGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPT----------QKIENFAKL 137
+ +G AGQTV H+H HV+P K GD + +I+ + ++
Sbjct: 75 TSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEM 134
Query: 138 EINAQKIRKELQ 149
A +R Q
Sbjct: 135 AAEAAALRVYFQ 146
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 72.2 bits (176), Expect = 2e-14
Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 11/142 (7%)
Query: 9 YDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILS 68
+ E +++D + + PG +I ++++ + P
Sbjct: 2 FHKNCELCTTAGGEI----LWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERD 57
Query: 69 QIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNI--H 126
+ ++ + A + + ++ + N + G PH+H+HVIP D ++
Sbjct: 58 HLMLVVFAVEEAVR-----EVMRPDKINLASLGNMTPHVHWHVIPRFKRDRHFPNSVWGE 112
Query: 127 PTQKIENFAKLEINAQKIRKEL 148
++ A + + ++K +
Sbjct: 113 TKRESLPQALDQGSTTALKKAI 134
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 65.5 bits (159), Expect = 2e-12
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 11 NQNIFIKIIRNE--TNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILS 68
+ + ++ E + V E + LA++ P L++PK+ + I + S
Sbjct: 17 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRS 76
Query: 69 QIAFLIKKIAIACKSAFQADGIQILQFNGHAAG---QTVPHLHFHVIP 113
+A +KK+ + FQ + ++G LH H P
Sbjct: 77 DLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 124
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 62.1 bits (150), Expect = 2e-11
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 9/117 (7%)
Query: 3 EKSSTHYDNQN--IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60
+ + +++ + + E +++ P + IIPK
Sbjct: 9 DGTKDYFEETGKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFH 65
Query: 61 EAPPEILSQIAFLIKKIAIACKSAFQADG----IQILQFNGHAAGQTVPHLHFHVIP 113
+ L+K + I + H ++P
Sbjct: 66 HLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP 122
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 41.3 bits (97), Expect = 4e-05
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 28 VYEDD------ILLAIM--DIMPRNPGHVLIIPKSR----IRDIFEAPPEILSQIAFLIK 75
V+E+ +L+ + + + +++ I R +RD+ +L I +
Sbjct: 44 VFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQ 103
Query: 76 KIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKN 116
+ I + D +++ + HLH H
Sbjct: 104 EA-ILKRYQVTGDRLRV----YLHYLPSYYHLHVHFTALGF 139
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 25.6 bits (56), Expect = 1.8
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 18 IIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
+ E ++ + + +L ++ +P G LI R IFE P + ++
Sbjct: 177 VCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHLQERVD 230
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 24.6 bits (53), Expect = 4.0
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 91 QILQFNGHAAGQTVPHLHFHVIPCKNGDN 119
+ ++G T PH+HF + G
Sbjct: 232 DQIAYSGSTGNSTAPHVHFQRM--SGGIG 258
>d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus
[TaxId: 1280]}
Length = 299
Score = 24.5 bits (53), Expect = 4.0
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 75 KKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHV-IPCKNGDNASHTNIHPTQKIEN 133
K + + G N + + ++V I ++ D+ + + P + E
Sbjct: 48 KDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEE 107
Query: 134 F 134
F
Sbjct: 108 F 108
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 173
Score = 24.7 bits (53), Expect = 4.2
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 41 MPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAA 100
P + + I I DI A +I + + +I IQ+ + G +A
Sbjct: 108 SPVHSIQLSDIDPVGIGDILIA---YKKRINQIAQHDSINY--------IQVFKNQGASA 156
Query: 101 GQTVPHLHFHVI 112
G ++ H H ++
Sbjct: 157 GASMSHSHSQMM 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,585
Number of extensions: 27326
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 22
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)