BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein
[Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 155

 Score =  318 bits (815), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60
           MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF
Sbjct: 1   MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60

Query: 61  EAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA 120
           EAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA
Sbjct: 61  EAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA 120

Query: 121 SHTNIHPTQKIENFAKLEINAQKIRKELQNFLKTT 155
           SHTNIHPTQKIENFAKLEINAQKIRKELQNFLKTT
Sbjct: 121 SHTNIHPTQKIENFAKLEINAQKIRKELQNFLKTT 155


>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 383

 Score = 25.0 bits (53), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 42  PRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKK 76
           P     +L++P SR ++I++  P   S +A L+K+
Sbjct: 189 PSQWKKILLLPGSRAQEIYKILPFFESAVASLVKR 223


>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score = 23.5 bits (49), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 28  VYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFE 61
           VY  + L A+ D++ RNP HV II      DI+E
Sbjct: 180 VYSQNRLRALADVLVRNP-HVHIISD----DIYE 208


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 23.5 bits (49), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 77  IAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVI 112
           IA   K+       QI+ + G     T PHLH+ +I
Sbjct: 565 IAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600


>gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 122

 Score = 23.1 bits (48), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 16 IKIIRNETNACRVYEDDILLAIMDIMPRN 44
          IK++      C    D +++A+ +++PR+
Sbjct: 22 IKVLGGSKRKCASIGDTVVVAVKEVIPRS 50


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 21.6 bits (44), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 130 KIENFAKLEINAQKIRKELQNF 151
           K  ++ KL    +K+RKE Q+F
Sbjct: 120 KFHHYIKLSKATEKLRKEGQSF 141


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 21.6 bits (44), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 48  VLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87
           V +I + R R      P++L Q A  +   A+AC S  +A
Sbjct: 353 VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEA 392


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 21.2 bits (43), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 43  RNPGHVLIIPKSRIRDIFEAPPEILSQ 69
           R P   +IIP +RI ++ E    +LS+
Sbjct: 455 RKPIKTVIIPINRIDEVIERLKVVLSE 481


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,027
Number of Sequences: 1233
Number of extensions: 3765
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 155
length of database: 328,796
effective HSP length: 67
effective length of query: 88
effective length of database: 246,185
effective search space: 21664280
effective search space used: 21664280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)