HHsearch alignment for GI: 254780781 and conserved domain: COG1043
>COG1043 LpxA Acyl-[acyl carrier protein].
Probab=99.34 E-value=1e-11 Score=92.36 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=66.0
Q ss_pred CCCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEE-------C-------
Q ss_conf 025431035640066514620-1030235336772015661232204730686881232112100-------5-------
Q gi|254780781|r 111 IIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVL-------E------- 175 (285)
Q Consensus 111 v~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvl-------e------- 175 (285)
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG 85 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG 85 (260)
T ss_pred CCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 57621527878828998888337988971988995883437996770777898791110428987545027984279988
Q ss_pred ---------------CCCCCCEEECCCCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEE
Q ss_conf ---------------77656448725847821857846888458856630046527833687
Q gi|254780781|r 176 ---------------PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIID 222 (285)
Q Consensus 176 ---------------p~~a~pviIeD~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d 222 (285)
T Consensus 86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD 147 (260)
T COG1043 86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGD 147 (260)
T ss_pred CCCEEEEEEEEECCCCCCCEEEEECCCCEEEEEEEEECCCEECCCEEEECCCEEECEEEECC
T ss_conf 99758668898615447861599778878987310313444567179966866854078877