HHsearch alignment for GI: 254780781 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.20 E-value=1.2e-10 Score=85.89 Aligned_cols=140 Identities=21% Similarity=0.332 Sum_probs=94.1
Q ss_pred EECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEC---CEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEEC
Q ss_conf 10356400665146201030235336772015661232---204730686881232112100577656448725847821
Q gi|254780781|r 116 IVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVG---SCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGA 192 (285)
Q Consensus 116 ~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG---~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa 192 (285)
T Consensus 12 ~i~~~afIap~A~viGd-----V~ig~~~sIw~~aVlRGD~~~I~IG~~tNIQD~~viH~~----~~~~~~IG~~vtIGH 82 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGD-----VIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGY----CDTDTIVGENGHIGH 82 (196)
T ss_pred CCCCCEEECCCCEEEEE-----EEECCCCEECCCEEEECCCCCEEECCCCEECCCCEEECC----CCCCCEECCCEEECC
T ss_conf 22998388999989984-----999999889777089568871798998676798378148----999858889805878
Q ss_pred CCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 85784688845885663004652783368715881464454998789605644556776657764467279896120246
Q gi|254780781|r 193 RSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSYPSINLKGDIAGPHLYCAVIIKKVDEKTR 272 (285)
Q Consensus 193 ~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~~~~~~~~~~~~~~~~~cavi~~~~d~~t~ 272 (285)
T Consensus 83 ~ailh-gc~Igd~~lIGmgavVldga~Ig~~~-------iI~AgslV~~g~~---ip~~~L~~G--~PAk~vR~lt~~ei 149 (196)
T PRK13627 83 GAILH-GCVIGRDALVGMNSVIMDGAVIGEES-------IVAAMSFVKAGFQ---GEKRQLLMG--TPARAVRSVSDQEL 149 (196)
T ss_pred CEEEE-EEEEECCCEECCCCEEECCCEECCCC-------EECCCCEECCCCC---CCCCCEEEE--CCEEEEECCCHHHH
T ss_conf 72996-34994897884697992888999998-------9976864579949---389819987--78168114999999
Q ss_pred HHHHH
Q ss_conf 68889
Q gi|254780781|r 273 SKTSI 277 (285)
Q Consensus 273 ~k~~l 277 (285)
T Consensus 150 ~~~~~ 154 (196)
T PRK13627 150 HWKRL 154 (196)
T ss_pred HHHHH
T ss_conf 99887