HHsearch alignment for GI: 254780781 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=95.82 E-value=0.015 Score=36.16 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHHHHCCC
Q ss_conf 997505316824417--89999999999730793
Q gi|254780781|r 14 SFFEESNSKNESIPQ--DVKDAVQSTLDLLDRGI 45 (285)
Q Consensus 14 ~awe~r~~l~~~~~~--~~~~aI~~~I~~LD~G~ 45 (285)
T Consensus 181 ~if~~~~~~kPSwRGElEITD~IQ~l---Ie~Gy 211 (361)
T TIGR01208 181 LIFEAIKNIKPSWRGELEITDAIQYL---IEKGY 211 (361)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHH---HHCCC
T ss_conf 98889852888776621577577565---31583