HHsearch alignment for GI: 254780781 and conserved domain: TIGR02092
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832 This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=96.57 E-value=0.012 Score=36.80 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=89.3
Q ss_pred HHHHHHHH-HHHHCCCEEEEEECCCCCEEEEHHHHHHHHHEEECCCCEEEECCCCCCCHHHCCC-CCCCCCCHHHHHHCC
Q ss_conf 99999999-9730793799887599968860788623222064267447624776420110177-532365202344247
Q gi|254780781|r 31 KDAVQSTL-DLLDRGIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGYSTWWDKIP-AKFDDWKTKDFEKHN 108 (285)
Q Consensus 31 ~~aI~~~I-~~LD~G~iRVAEk~~nG~W~VNeWvKKAILL~Fri~~~~~i~~g~~~~~~~DKvp-~Kf~~~~~~~f~~~g 108 (285)
T Consensus 224 ~~~l~~~~~~~l~~~~~~aYEY~GY-l~~I~s-----~~sYY~-aNM~lL~~-----~~f~~LF~~~~~---rpI--YTK 286 (383)
T TIGR02092 224 KTSLEELIRENLKELNINAYEYKGY-LANINS-----VKSYYK-ANMDLLEP-----KIFQSLFYISQS---RPI--YTK 286 (383)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEE-EEEECC-----HHHHHH-HHHHHHHH-----HHHHHHHCCCCC---CEE--EEE
T ss_conf 6799999999998647543303422-111101-----678988-72886316-----876887077888---714--787
Q ss_pred CCCCCCCEECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCC
Q ss_conf 51025431035640066514620103023533677201566123220473068688123211210057765644872584
Q gi|254780781|r 109 FRIIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNC 188 (285)
Q Consensus 109 ~rv~P~a~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v 188 (285)
T Consensus 287 vKdE~PT~y~~~S~V~------------nSl~anGc~IEG--~V~N-Sil~R~V~v~kd~~~---------kn~iimq~~ 342 (383)
T TIGR02092 287 VKDEPPTYYAETSKVE------------NSLVANGCIIEG--KVEN-SILSRGVYVGKDALI---------KNSIIMQRT 342 (383)
T ss_pred ECCCCCCCCCCCCEEE------------EEEEECCCEECC--EEEE-EEEECCEEECCCCEE---------EEEEECCCC
T ss_conf 3588887446787676------------666762635614--8855-798554187278678---------754775887
Q ss_pred EEECCCEEECCEEECCCCEEEEEEEECC
Q ss_conf 7821857846888458856630046527
Q gi|254780781|r 189 FIGARSEIVEGCIIREGSVLGMGVFIGK 216 (285)
Q Consensus 189 ~IGa~s~I~~Gv~Ig~gavIgaG~vit~ 216 (285)
T Consensus 343 ~Ig~ga~L~-~vI~DK~~~I~~n~~~~G 369 (383)
T TIGR02092 343 VIGEGAHLE-NVIIDKDVVIEPNEKIAG 369 (383)
T ss_pred EECCCCEEE-EEEECCCCEECCCEEEEE
T ss_conf 778786561-588657628788706852