HHsearch alignment for GI: 254780781 and conserved domain: TIGR02092
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832 This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=95.00 E-value=0.038 Score=33.75 Aligned_cols=144 Identities=20% Similarity=0.353 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHC------CCEEEEEECCCCCEEEEHHHHHHHHHEEECCCCEE-EECC-CCCCCHHHCCCCCCCCCC
Q ss_conf 899999999997307------93799887599968860788623222064267447-6247-764201101775323652
Q gi|254780781|r 29 DVKDAVQSTLDLLDR------GIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKI-ISDG-NGYSTWWDKIPAKFDDWK 100 (285)
Q Consensus 29 ~~~~aI~~~I~~LD~------G~iRVAEk~~nG~W~VNeWvKKAILL~Fri~~~~~-i~~g-~~~~~~~DKvp~Kf~~~~ 100 (285)
T Consensus 226 ~l~~~~~~~l~~~~~~aYEY~GYl~~I~s~~-sYY~aNM-----~lL~~~~f~~LF~~~~~rpIYTKvKdE~PT~y~~-- 297 (383)
T TIGR02092 226 SLEELIRENLKELNINAYEYKGYLANINSVK-SYYKANM-----DLLEPKIFQSLFYISQSRPIYTKVKDEPPTYYAE-- 297 (383)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEECCHH-HHHHHHH-----HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC--
T ss_conf 9999999999864754330342211110167-8988728-----8631687688707788871478735888874467--
Q ss_pred HHHHHHCCCCCCCCCEECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCC
Q ss_conf 02344247510254310356400665146201030235336772015661232204730686881232112100577656
Q gi|254780781|r 101 TKDFEKHNFRIIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG 180 (285)
Q Consensus 101 ~~~f~~~g~rv~P~a~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~ 180 (285)
T Consensus 298 -----~S~---V~nSl~anGc~IEG-~V~-NSil~R~V~v~kd~~~kn-~iimq~~~Ig~ga~L~--------------- 351 (383)
T TIGR02092 298 -----TSK---VENSLVANGCIIEG-KVE-NSILSRGVYVGKDALIKN-SIIMQRTVIGEGAHLE--------------- 351 (383)
T ss_pred -----CCE---EEEEEEECCCEECC-EEE-EEEEECCEEECCCCEEEE-EEECCCCEECCCCEEE---------------
T ss_conf -----876---76666762635614-885-579855418727867875-4775887778786561---------------
Q ss_pred CEEECCCCEEECCCEEEC----CEEECCCC
Q ss_conf 448725847821857846----88845885
Q gi|254780781|r 181 PTIIEDNCFIGARSEIVE----GCIIREGS 206 (285)
Q Consensus 181 pviIeD~v~IGa~s~I~~----Gv~Ig~ga 206 (285)
T Consensus 352 ~vI~DK~~~I~~n~~~~G~~e~PlVi~Kg~ 381 (383)
T TIGR02092 352 NVIIDKDVVIEPNEKIAGTSEQPLVISKGK 381 (383)
T ss_pred EEEECCCCEECCCEEEEECCCCCEEECCCC
T ss_conf 588657628788706852478862644876