HHsearch alignment for GI: 254780781 and conserved domain: TIGR03536
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.80 E-value=1.1e-19 Score=141.19 Aligned_cols=177 Identities=22% Similarity=0.333 Sum_probs=136.7
Q ss_pred CHHHCCCCCCCCCCHHHH-HHCCCCCCCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECCEEEECCCCEE
Q ss_conf 011017753236520234-424751025431035640066514620-103023533677201566123220473068688
Q gi|254780781|r 87 TWWDKIPAKFDDWKTKDF-EKHNFRIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHI 164 (285)
Q Consensus 87 ~~~DKvp~Kf~~~~~~~f-~~~g~rv~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI 164 (285)
T Consensus 162 ~~vDkfPrm------~dyvvP~gvRIad~~rVRLGA~L~~GTtvmhegfvnfNAGTlG~~mvEG--RiS~GVvVg~gsDi 233 (341)
T TIGR03536 162 DCVDKFPKM------TDYVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEG--RISAGVMVGKGSDL 233 (341)
T ss_pred EEECCCCCH------HHEECCCCCEECCCCCEEEEEEECCCEEEECCCEEECCCCCCCCCEEEE--EEECCEEECCCCCC
T ss_conf 982457414------3145678837615663443007758817702214750477766424530--44034696678766
Q ss_pred ECCCEECCEECCCCCCCEEECCCCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCC-CEEEEECCCCCEEECCC
Q ss_conf 12321121005776564487258478218578468884588566300465278336871588-14644549987896056
Q gi|254780781|r 165 SGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTG-EITYGEVPSYSVVVPGS 243 (285)
Q Consensus 165 ~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~-~~~~g~vP~~~vvvpg~ 243 (285)
T Consensus 234 GGgaSimGtLSGGg~~~isiG~~cLlGANsg~--GI~LGD~C~veaGlyvtagtkv~~~d~~~~~~~-~vka~--eLsg~ 308 (341)
T TIGR03536 234 GGGCSTMGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAVLDDKGELVE-TVKAR--DLAGQ 308 (341)
T ss_pred CCCEEEEEEECCCCCEEEEECCCCCCCCCCCC--CCCCCCCCEEECCEEEECCCEEEEECCCCCCCE-EEEHH--HHCCC
T ss_conf 77502477635898236888732201444555--742489847812449927967988677888120-78879--85799
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 445567766577644672798961202466888998751159
Q gi|254780781|r 244 YPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS 285 (285)
Q Consensus 244 ~~~~~~~~~~~~~~~~cavi~~~~d~~t~~k~~ln~~lR~~~ 285 (285)
T Consensus 309 ~~llFrrn-----S~tG~ve~~~~~----~~i~LN~~LH~nn 341 (341)
T TIGR03536 309 SDLLFRRN-----SINGAIECLTNK----SAIALNEELHANN 341 (341)
T ss_pred CCCEEEEC-----CCCCCEEEEECC----CEEECHHHHHCCC
T ss_conf 88079971-----887428999789----8061206662489