HHsearch alignment for GI: 254780781 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.56 E-value=1.7e-14 Score=109.41 Aligned_cols=100 Identities=29% Similarity=0.478 Sum_probs=73.5
Q ss_pred CCCCCCCCEECCCCCCCCCCEEEC-CEEEC----CCCCCCCCCCCCCCEE----CCEEEECCCCEEECCCEECCEECCCC
Q ss_conf 751025431035640066514620-10302----3533677201566123----22047306868812321121005776
Q gi|254780781|r 108 NFRIIPGTIVRHSAYIGPKAVLMP-SFVNM----GAYIGEGSMIDTWSTV----GSCAQIGKNVHISGGVGIGGVLEPIQ 178 (285)
Q Consensus 108 g~rv~P~a~vr~ga~Ig~g~vimp-~~Vni----GA~Ig~gt~I~~~a~I----G~~a~IG~~vhI~~g~~IGGvlep~~ 178 (285)
T Consensus 8 ~afIap~A~viGdV~ig~~~sIw~~aviRgD~~~~I~IG~~~nIqD~~viH~~~~~~~~IG~~vtIgh~a~ihG------ 81 (167)
T cd00710 8 SAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG------ 81 (167)
T ss_pred CEEECCCCEEEEEEEECCCCEECCCCEEECCCCCCEEECCCCCCCCCEEEECCCCCCEEECCCCEECCCCEECC------
T ss_conf 93989999899708999999998887894788887698887434777078225766749779828989848812------
Q ss_pred CCCEEECCCCEEECCCEEECCEEECCCCEEEEEEEECC
Q ss_conf 56448725847821857846888458856630046527
Q gi|254780781|r 179 TGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGK 216 (285)
Q Consensus 179 a~pviIeD~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~ 216 (285)
T Consensus 82 --~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g 116 (167)
T cd00710 82 --PAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDG 116 (167)
T ss_pred --EEEECCCCEECCCCEEEC-CEECCCCEECCCCEEEC
T ss_conf --049839988988989982-59769989988988847