HHsearch alignment for GI: 254780781 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.23 E-value=5.9e-11 Score=87.66 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=80.6
Q ss_pred EECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEC----CEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEE
Q ss_conf 10356400665146201030235336772015661232----20473068688123211210057765644872584782
Q gi|254780781|r 116 IVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVG----SCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIG 191 (285)
Q Consensus 116 ~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG----~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IG 191 (285)
T Consensus 4 ~i~~~afIap~A~viGd-----V~ig~~~sIw~~aviRgD~~~~I~IG~~~nIqD~~viH~----~~~~~~~IG~~vtIg 74 (167)
T cd00710 4 VIDPSAYVHPTAVVIGD-----VIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA----LEGYSVWIGKNVSIA 74 (167)
T ss_pred CCCCCEEECCCCEEEEE-----EEECCCCEECCCCEEECCCCCCEEECCCCCCCCCEEEEC----CCCCCEEECCCCEEC
T ss_conf 06999398999989970-----899999999888789478888769888743477707822----576674977982898
Q ss_pred CCCEEECCEEECCCCEEEEEEEECCCCEEEE---CCCCCEEEE-ECCCCCEEECCCC
Q ss_conf 1857846888458856630046527833687---158814644-5499878960564
Q gi|254780781|r 192 ARSEIVEGCIIREGSVLGMGVFIGKSTKIID---RNTGEITYG-EVPSYSVVVPGSY 244 (285)
Q Consensus 192 a~s~I~~Gv~Ig~gavIgaG~vit~st~i~d---~~~~~~~~g-~vP~~~vvvpg~~ 244 (285)
T Consensus 75 h~a~ihG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g~~i~~g~~v~~G~~ 130 (167)
T cd00710 75 HGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred CCCEECCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEEECCCCCCCCEECCCCE
T ss_conf 9848812049839988988989982-5976998998898884778399989558828