HHsearch alignment for GI: 254780781 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=100.00 E-value=1.4e-44 Score=293.48 Aligned_cols=138 Identities=62% Similarity=1.056 Sum_probs=135.5
Q ss_pred CCCCCCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECC
Q ss_conf 751025431035640066514620-1030235336772015661232204730686881232112100577656448725
Q gi|254780781|r 108 NFRIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIED 186 (285)
Q Consensus 108 g~rv~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD 186 (285)
T Consensus 1 g~rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i~g~~~p~~~~~v~IeD 80 (139)
T cd03350 1 GRRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIED 80 (139)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCCCEECC
T ss_conf 90749982988999999998998899984398989872786666026866999932898886784442576468868879
Q ss_pred CCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCCC
Q ss_conf 84782185784688845885663004652783368715881464454998789605644
Q gi|254780781|r 187 NCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSYP 245 (285)
Q Consensus 187 ~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~~~ 245 (285)
T Consensus 81 ~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~~g~~~~~~~p~~~~~~~~~~~ 139 (139)
T cd03350 81 DVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred CEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEECCCEEECCCCCCCEECCCCCC
T ss_conf 95993099894687999998999798891898846823780970116998787458889