HHsearch alignment for GI: 254780781 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.42 E-value=6.8e-13 Score=99.55 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=82.5
Q ss_pred CEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECCCEEEC--------CEEEC
Q ss_conf 1030235336772015661232204730686881232112100577656448725847821857846--------88845
Q gi|254780781|r 132 SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVE--------GCIIR 203 (285)
Q Consensus 132 ~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I~~--------Gv~Ig 203 (285)
T Consensus 8 A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~--------~~~IG~~v~I~~g~~i~g~~~p~~~~~v~Ie 79 (139)
T cd03350 8 AIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGS--------CAQIGKNVHLSAGAVIGGVLEPLQATPVIIE 79 (139)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC--------CCEECCCCEECCCCEECCCCCCCCCCCCEEC
T ss_conf 29889999999989988999843989898727866660268--------6699993289888678444257646886887
Q ss_pred CCCEEEEEEEECCCCEEEE---CCCCCEEEEECCCCCEE
Q ss_conf 8856630046527833687---15881464454998789
Q gi|254780781|r 204 EGSVLGMGVFIGKSTKIID---RNTGEITYGEVPSYSVV 239 (285)
Q Consensus 204 ~gavIgaG~vit~st~i~d---~~~~~~~~g~vP~~~vv 239 (285)
T Consensus 80 D~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~ 118 (139)
T cd03350 80 DDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRE 118 (139)
T ss_pred CCEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEE
T ss_conf 995993099894687999998999798891898846823