HHsearch alignment for GI: 254780781 and conserved domain: cd04649
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.46 E-value=4.6e-07 Score=63.87 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=64.4
Q ss_pred HHHCCCCCCCCCEECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECC--------EEEECCCCEEECCCEECCEEC
Q ss_conf 442475102543103564006651462010302353367720156612322--------047306868812321121005
Q gi|254780781|r 104 FEKHNFRIIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGS--------CAQIGKNVHISGGVGIGGVLE 175 (285)
Q Consensus 104 f~~~g~rv~P~a~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~--------~a~IG~~vhI~~g~~IGGvle 175 (285)
T Consensus 15 yl~~Gt~vM~egfVN~nAgt~g~~Mie-grissgv~VG~~~diggGasi~G~Ls~g~~~pi~Ig~ncliGAnsgiG---- 89 (147)
T cd04649 15 YLAEGTTVMHEGFVNFNAGTLGNCMVE-GRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGIG---- 89 (147)
T ss_pred EECCCCEECCCCEEEECCCCCCCCEEE-EEEEECEEECCCCCCCCCCEEEEECCCCCCCCEEECCCEEECCCCCCC----
T ss_conf 887995986256798766306661687-678515698998332786178787167882356988750761465458----
Q ss_pred CCCCCCEEECCCCEEECCCEEECCEEE
Q ss_conf 776564487258478218578468884
Q gi|254780781|r 176 PIQTGPTIIEDNCFIGARSEIVEGCII 202 (285)
Q Consensus 176 p~~a~pviIeD~v~IGa~s~I~~Gv~I 202 (285)
T Consensus 90 ------i~lGd~cvv~aGlyi~~gTki 110 (147)
T cd04649 90 ------ISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred ------EEECCCCEEECCEEECCCCEE
T ss_conf ------486898688244598399789