RPSBLAST alignment for GI: 254780781 and conserved domain: cd03359

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 161
 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 41/107 (38%)

Query: 115 TIVRHSAYIGPKAVLMPSF-----------VNMGAY--IGEGSMIDTWSTVGSCAQIGKN 161
           +I R+   +    V+ P F           +++G Y  IGE  ++       + AQIG  
Sbjct: 44  SIGRYC-ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV-------NAAQIGSY 95

Query: 162 VHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVL 208
           VHI                      NC IG R  I +   I +G+V+
Sbjct: 96  VHI--------------------GKNCVIGRRCIIKDCVKILDGTVV 122