RPSBLAST alignment for GI: 254780781 and conserved domain: TIGR01853
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324
Score = 47.3 bits (113), Expect = 5e-06
Identities = 42/145 (28%), Positives = 54/145 (37%), Gaps = 35/145 (24%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFV-NMGAYIGEGSMIDTWSTVGS-------C------- 155
I P +V SA IG + P+ V G IGE +I +G
Sbjct: 94 IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVV 153
Query: 156 ----AQIGKNVHISGGVGIGG-----VLEPI-------QTGPTIIEDNCFIGARSEIVEG 199
Q+GKNV I G IG Q G IIED+ IGA + I G
Sbjct: 154 IYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRG 213
Query: 200 C----IIREGSVLGMGVFIGKSTKI 220
II EG+ + V I + +I
Sbjct: 214 AFDDTIIGEGTKIDNLVQIAHNCRI 238