BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780781|ref|YP_003065194.1|
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(285 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 579 bits (1492), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH 60
MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH
Sbjct: 1 MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH 60
Query: 61 QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS 120
QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS
Sbjct: 61 QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS 120
Query: 121 AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG 180
AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG
Sbjct: 121 AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG 180
Query: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240
PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV
Sbjct: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240
Query: 241 PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS 285
PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS
Sbjct: 241 PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS 285
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197
A I EGS I+ S VG +GKNV+I G I + T I +N FIG+ S ++
Sbjct: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGT-ITCNYDGTHKYKTHINENAFIGSNSSLI 395
Query: 198 EGCIIREGSVLGMGVFIGKST 218
I +G+ + G I + T
Sbjct: 396 APITIGQGTYVASGSIITQDT 416
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 123 IGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVH------ISGGVGIGGVLE 175
+G ++ P + V GA IG S+I + VGS +IG V ++G IG +
Sbjct: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
Query: 176 ----PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG-VFIGKSTKIIDRN 224
+ G T + + F+G + + C+IREG + G V G T + D N
Sbjct: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNN 117
>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 347
Score = 30.0 bits (66), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170
+ PG + Y+GP +V + G IG I S++ S + IG +V + GV I
Sbjct: 143 VYPGVEIGRKTYVGPGSV-----IGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196
Query: 171 GG-----------VLEPIQTGPTIIEDNCFIGARSEIVEGCI 201
G + + + G II+D IGA S I G I
Sbjct: 197 GNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238
Score = 26.2 bits (56), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEI 196
IGE + ID QIG NVHI G I V + G T I DN IG + I
Sbjct: 243 IGENTKIDNQ------VQIGHNVHIGCGCII--VSQVGIAGSTYIGDNVLIGGQCGI 291
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 139 YIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVE 198
+IG G +I + + IG NV I G GI G L+ I DN I ++S +++
Sbjct: 260 HIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGVLK 311
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 113 PGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVG 153
P TIV+ + I P++VL P F G I + +D S +G
Sbjct: 210 PQTIVQEGSIIDPESVLNPQF---GKPIRVAAGMDIRSVLG 247
>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 433
Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 51 RDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGYSTWWD 90
R ++G + H+ AI + NP II G YS WD
Sbjct: 154 RKEDGLLDMHEIESLAI----EYNPKLIIVGGTAYSRVWD 189
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 42 DRGIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGY 85
D I ++ H+ + QW + +L+SF P + G+ Y
Sbjct: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPY 226
>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 184 IEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS 243
IE + F GAR ++E + S+ I S II G Y P VP
Sbjct: 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE----VPAR 174
Query: 244 YPSINLK 250
+ N+K
Sbjct: 175 FRENNIK 181
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 23.1 bits (48), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 253 IAGPHLYCAVIIKKVDEKTR 272
I GPH A ++ KVDE+ R
Sbjct: 79 IIGPHKDDAAMMGKVDEQAR 98
>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
biogenesis [Candidatus Liberibacter asiaticus str.
psy62]
Length = 406
Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 199 GCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVP 234
G +E + M F+G S I D +TY ++P
Sbjct: 235 GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLP 270
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,415
Number of Sequences: 1233
Number of extensions: 8834
Number of successful extensions: 41
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 15
length of query: 285
length of database: 328,796
effective HSP length: 73
effective length of query: 212
effective length of database: 238,787
effective search space: 50622844
effective search space used: 50622844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)