BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (285 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 579 bits (1492), Expect = e-167, Method: Compositional matrix adjust. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 1 MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH 60 MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH Sbjct: 1 MITIVSTLEEIIDSFFEESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTH 60 Query: 61 QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS 120 QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS Sbjct: 61 QWIKKAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHS 120 Query: 121 AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG 180 AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG Sbjct: 121 AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTG 180 Query: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV Sbjct: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240 Query: 241 PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS 285 PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS Sbjct: 241 PGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLRDYS 285 >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197 A I EGS I+ S VG +GKNV+I G I + T I +N FIG+ S ++ Sbjct: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGT-ITCNYDGTHKYKTHINENAFIGSNSSLI 395 Query: 198 EGCIIREGSVLGMGVFIGKST 218 I +G+ + G I + T Sbjct: 396 APITIGQGTYVASGSIITQDT 416 >gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%) Query: 123 IGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVH------ISGGVGIGGVLE 175 +G ++ P + V GA IG S+I + VGS +IG V ++G IG + Sbjct: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 Query: 176 ----PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG-VFIGKSTKIIDRN 224 + G T + + F+G + + C+IREG + G V G T + D N Sbjct: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNN 117 >gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 30.0 bits (66), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 17/102 (16%) Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170 + PG + Y+GP +V + G IG I S++ S + IG +V + GV I Sbjct: 143 VYPGVEIGRKTYVGPGSV-----IGAGVRIGRNCSIGAGSSIYS-SLIGNSVILHSGVRI 196 Query: 171 GG-----------VLEPIQTGPTIIEDNCFIGARSEIVEGCI 201 G + + + G II+D IGA S I G I Sbjct: 197 GNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTI 238 Score = 26.2 bits (56), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEI 196 IGE + ID QIG NVHI G I V + G T I DN IG + I Sbjct: 243 IGENTKIDNQ------VQIGHNVHIGCGCII--VSQVGIAGSTYIGDNVLIGGQCGI 291 Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 139 YIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVE 198 +IG G +I + + IG NV I G GI G L+ I DN I ++S +++ Sbjct: 260 HIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLK--------IGDNVQIASKSGVLK 311 >gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] Length = 350 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Query: 113 PGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVG 153 P TIV+ + I P++VL P F G I + +D S +G Sbjct: 210 PQTIVQEGSIIDPESVLNPQF---GKPIRVAAGMDIRSVLG 247 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Query: 51 RDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGYSTWWD 90 R ++G + H+ AI + NP II G YS WD Sbjct: 154 RKEDGLLDMHEIESLAI----EYNPKLIIVGGTAYSRVWD 189 >gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 42 DRGIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGY 85 D I ++ H+ + QW + +L+SF P + G+ Y Sbjct: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPY 226 >gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 228 Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 184 IEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS 243 IE + F GAR ++E + S+ I S II G Y P VP Sbjct: 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE----VPAR 174 Query: 244 YPSINLK 250 + N+K Sbjct: 175 FRENNIK 181 >gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 23.1 bits (48), Expect = 5.5, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 253 IAGPHLYCAVIIKKVDEKTR 272 I GPH A ++ KVDE+ R Sbjct: 79 IIGPHKDDAAMMGKVDEQAR 98 >gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 199 GCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVP 234 G +E + M F+G S I D +TY ++P Sbjct: 235 GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLP 270 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.137 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 197,415 Number of Sequences: 1233 Number of extensions: 8834 Number of successful extensions: 41 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 15 length of query: 285 length of database: 328,796 effective HSP length: 73 effective length of query: 212 effective length of database: 238,787 effective search space: 50622844 effective search space used: 50622844 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)