HHsearch alignment for GI: 254780782 and conserved domain: TIGR01900
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase; InterPro: IPR010174 This entry represents a clade of succinyl-diaminopimelate desuccinylases from actinobacteria (high-GC Gram-positives) and is based on the characterisation of the enzyme from Corynebacterium glutamicum . This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases. They are classified as non-peptidases homologs belonging to MEROPS peptidase family M20A.
Probab=100.00 E-value=5.6e-45 Score=295.31 Aligned_cols=340 Identities=24% Similarity=0.294 Sum_probs=249.8
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCEEEEEEEEECCCCC-EEEEECCCCCCCCCCH--
Q ss_conf 99999649997899689999999999977---98489997058887624899999879998-8999733681578887--
Q gi|254780782|r 8 HLIQLIKCPSVTPQDGGAFFILVNTLKLL---GFSIEEKDFQTKNTSIVKNLYARFGTEAP-HLMFAGHIDVVPPGDF-- 81 (389)
Q Consensus 8 ~l~~lv~ips~s~~e~~~~~~l~~~l~~~---G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ill~~H~Dtvp~~~~-- 81 (389)
T Consensus 1 L~~~~~~~~S~S~~E~~~~DE~E~~L~nl~~~~~~V~R~--~-------~~V~A~T~~G~~SRV~LAGH~DTVP~~DNlP 71 (373)
T TIGR01900 1 LLTRLVDIFSVSDQEKQLADEVEDALRNLELEGLEVFRF--N-------DTVLARTDFGKASRVILAGHLDTVPVIDNLP 71 (373)
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE--C-------CEEEEEECCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 942100036888887630378999998517887179970--7-------8379750788842145524445204213778
Q ss_pred HHCCCCCCC--------EEEECCCCCCCCCCCCCCHHHHHHHHCCCCC---CCCCCCCCEEEEEEEECCC-EECCCCCCC
Q ss_conf 772566642--------2452133236544333201245441000000---0113578349997520220-110442111
Q gi|254780782|r 82 NHWTYPPFS--------ATIAEGKIYGRGIVDMKGSIACFIAAVARFI---PKYKNFGSISLLITGDEEG-PAINGTKKM 149 (389)
Q Consensus 82 ~~W~~~Pf~--------~~~~~g~l~GrG~~D~Kg~ia~~l~a~~~l~---~~~~~~~~i~~~~~~dEE~-~~~~G~~~l 149 (389)
T Consensus 72 PkWlePGdslireeiah~~~ED~~lyG~G~~DMK~~~AV~L~~~ATLdGr~~~T~~K~DLT~~~Y~~EEV~~~~NGL~~~ 151 (373)
T TIGR01900 72 PKWLEPGDSLIREEIAHARVEDRVLYGRGAVDMKASLAVYLYLAATLDGRATETELKVDLTLVAYDHEEVVDEKNGLRKV 151 (373)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHCCCCCHH
T ss_conf 43247650355654542465463574377521011468999998721677877754520245542113567542662005
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 1100013321203541456654343100123222357999999641231000000120134554432011223344566-
Q gi|254780782|r 150 LSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGN- 228 (389)
Q Consensus 150 ~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~rG~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~- 228 (389)
T Consensus 152 ~~~HP~-W~~~DlA~~GEPT~~~-----IE~GC~G~~R~~V~~HGV~AHSAR~WlG~NA~HK~~~I~~~~~AY~~A~VN~ 225 (373)
T TIGR01900 152 VDEHPD-WLAADLALLGEPTNSG-----IEAGCNGTLRIDVVAHGVAAHSARAWLGDNAIHKLADILSKLAAYKAAEVNV 225 (373)
T ss_pred HHCCCC-HHHHCEEEECCCCCCC-----CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 341765-0112411330676873-----3344455248999854621223443421125767888987765057653540
Q ss_pred -CCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH-----------HHCCCC-EEEE
Q ss_conf -442101466765542046665543211665134342067799999999998765324-----------203431-1232
Q gi|254780782|r 229 -TTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQ-----------NVPKLS-HTVH 295 (389)
Q Consensus 229 -~~~~~~~~~i~~i~~g~~~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~l~~~~~-----------~~~~~~-~~i~ 295 (389)
T Consensus 226 DGL~YREGLN~~l~~~-G~~~NVIPD~~~~~~NyRFAP~~~L~EAkalmmGa-daGaelGn~EHV~~~~~l~G~~Gie~~ 303 (373)
T TIGR01900 226 DGLDYREGLNIVLIES-GKATNVIPDLARVNLNYRFAPDKDLAEAKALMMGA-DAGAELGNIEHVVETLVLDGYDGIEIE 303 (373)
T ss_pred CCCCCCCCCEEEEECC-CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 5633323530788617-84244156512674212018872578898886302-234211572146740164177744799
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEEEECCCC-CCCCCCEEE
Q ss_conf 2266311257867899999999999982899579741454358898605989999004787-368784047
Q gi|254780782|r 296 FSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRT-MHALNENAS 365 (389)
Q Consensus 296 ~~~~~~p~~~~~~~~l~~~l~~a~~~~~g~~~~~~~~gg~~d~~~~~~~iP~v~fGp~~~~-~H~pdE~i~ 365 (389)
T Consensus 304 ~~D~~~~A~PGL~~~~~~~L~~~V~~~~~RdPlA-KlGWTDV~RFS~lGIPA~NlGAGDP~lAHK~DEQ~P 373 (373)
T TIGR01900 304 VKDEAGSALPGLNAQLASDLVDLVKRRKIRDPLA-KLGWTDVARFSALGIPALNLGAGDPLLAHKRDEQVP 373 (373)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH-HCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 8628888788776356789999863114666222-325303566653276602137787220023226799