PSIBLAST alignment of GI: 254780782 and protein with PDB id: 1vgy
>gi|39655033|pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393
>gi|39655034|pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 164/385 (42%), Positives = 220/385 (57%), Gaps = 13/385 (3%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
LE +LI PSVTP D + L +GF+ EE F KN++ R GT+AP
Sbjct: 9 LELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHF-----GNTKNIWLRRGTKAP 63
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
+ FAGH DVVP G W PPF +G++YGRG D K SIACF+ A RF+ K+
Sbjct: 64 VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERFVAKHP 123
Query: 126 -NFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
+ GSI+LLIT DEEG A++GT K++ ++ + E D CIVGEPT +GD IK GRRG
Sbjct: 124 NHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDXIKNGRRG 183
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
SLSG +T+ GKQGH+AYPHL NP+ P L +LT +D GN F PT+ +I+ I+ G
Sbjct: 184 SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ NVIP ++ + FN RF+ E LK+ + + L K + + + +S P F
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK-----HGVQYDLQWSCSGQP-F 297
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCP-VIEFGLVGRTMHALNEN 363
LT KLT + +I T G LST+GGTSD RFIK +IE G T+H +NEN
Sbjct: 298 LTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAXAQELIELGPSNATIHQINEN 357
Query: 364 ASLQDLEDLTCIYENFLQNWFITPS 388
L D+ L+ +YE L +
Sbjct: 358 VRLNDIPKLSAVYEGILVRLLAGNA 382