PSIBLAST alignment of GI: 254780782 and protein with PDB id: 1vgy

>gi|39655033|pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393
>gi|39655034|pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393
 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 220/385 (57%), Gaps = 13/385 (3%)

Query: 6   LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
           LE   +LI  PSVTP D     +    L  +GF+ EE  F        KN++ R GT+AP
Sbjct: 9   LELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHF-----GNTKNIWLRRGTKAP 63

Query: 66  HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
            + FAGH DVVP G    W  PPF     +G++YGRG  D K SIACF+ A  RF+ K+ 
Sbjct: 64  VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERFVAKHP 123

Query: 126 -NFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
            + GSI+LLIT DEEG A++GT K++  ++ + E  D CIVGEPT    +GD IK GRRG
Sbjct: 124 NHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDXIKNGRRG 183

Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
           SLSG +T+ GKQGH+AYPHL  NP+    P L +LT   +D GN  F PT+ +I+ I+ G
Sbjct: 184 SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243

Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
             + NVIP ++ + FN RF+    E  LK+ + + L K       + + + +S    P F
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK-----HGVQYDLQWSCSGQP-F 297

Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCP-VIEFGLVGRTMHALNEN 363
           LT   KLT +   +I  T G    LST+GGTSD RFIK     +IE G    T+H +NEN
Sbjct: 298 LTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAXAQELIELGPSNATIHQINEN 357

Query: 364 ASLQDLEDLTCIYENFLQNWFITPS 388
             L D+  L+ +YE  L       +
Sbjct: 358 VRLNDIPKLSAVYEGILVRLLAGNA 382