RPSBLAST alignment for GI: 254780782 and conserved domain: TIGR01246
>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason. Length = 370
Score = 431 bits (1109), Expect = e-121
Identities = 175/379 (46%), Positives = 229/379 (60%), Gaps = 13/379 (3%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
E +LI PSVTP D G I+ L+ LGF IE F KNL+A GT P
Sbjct: 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGD-----TKNLWATRGTGEP 56
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
L FAGH DVVP G W+ PPF +GK+YGRG DMKGS+A FI A RF+ K
Sbjct: 57 VLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNP 116
Query: 126 NF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
+ GSISLLIT DEEG AI+GTKK++ + + E D CIVGEP+ +GD IK GRRG
Sbjct: 117 DHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRG 176
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
S++G +TI G QGHVAYPHL NPI P L +LT I +D GN F PT+++IT I G
Sbjct: 177 SITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ NVIP ++ + FN+RF+ +++ LK+ + + I + L + + +S P F
Sbjct: 237 TGANNVIPGELYVQFNLRFSTEVSDEILKQRVEA-----ILDQHGLDYDLEWSLSGEP-F 290
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALNEN 363
LT+D KL ++I T G P LST GGTSD RFI V+EFG V T+H +NE
Sbjct: 291 LTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNATIHKVNEC 350
Query: 364 ASLQDLEDLTCIYENFLQN 382
S++DLE L+ +Y++ L+N
Sbjct: 351 VSIEDLEKLSDVYQDLLEN 369