RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate
desuccinylase [Candidatus Liberibacter asiaticus str. psy62]
(389 letters)
>gnl|CDD|183838 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 375
Score = 602 bits (1555), Expect = e-173
Identities = 191/385 (49%), Positives = 239/385 (62%), Gaps = 13/385 (3%)
Query: 2 TPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFG 61
D LE LI+ PSVTP D G +L L+ LGF+ E DF VKNL+AR G
Sbjct: 1 MSDVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDF-----GDVKNLWARRG 55
Query: 62 TEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI 121
TE PHL FAGH DVVPPGD WT PPF TI +G +YGRG DMKGS+A F+ A RF+
Sbjct: 56 TEGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFV 115
Query: 122 PKYKNF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
+ + GSI+ LIT DEEGPAINGT K+L W++ +GEK D CIVGEPT +GD IK
Sbjct: 116 AAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKN 175
Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
GRRGSL+G++T+ G QGHVAYPHL +NPI P L +L +D GN F PT+++IT
Sbjct: 176 GRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITN 235
Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
ID G + NVIP +++ FN RF+ ++LK + + L K L +T+ ++
Sbjct: 236 IDAGTGATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK-----HGLDYTLEWTLS- 289
Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYC-PVIEFGLVGRTMHA 359
FLT KL + +I TG P LSTSGGTSDARFI DY V+EFG V T+H
Sbjct: 290 GEPFLTPPGKLVDAVVAAIEAVTGITPELSTSGGTSDARFIADYGAQVVEFGPVNATIHK 349
Query: 360 LNENASLQDLEDLTCIYENFLQNWF 384
+NE S+ DLE LT IYE L+
Sbjct: 350 VNECVSVADLEKLTRIYERILERLL 374
>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase,
proteobacterial clade. This model describes a
proteobacterial subset of succinyl-diaminopimelate
desuccinylases. An experimentally confirmed
Gram-positive lineage succinyl-diaminopimelate
desuccinylase has been described for Corynebacterium
glutamicum, and a neighbor-joining tree shows the seed
members, SP:Q59284, and putative archaeal members such
as TrEMBL:O58003 in a single clade. However, the
archaeal members differ substantially, share a number of
motifs with acetylornithine deacetylases rather than
succinyl-diaminopimelate desuccinylases, and are not
taken as trusted examples of succinyl-diaminopimelate
desuccinylases. This model is limited to proteobacterial
members for this reason.
Length = 370
Score = 431 bits (1109), Expect = e-121
Identities = 175/379 (46%), Positives = 229/379 (60%), Gaps = 13/379 (3%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
E +LI PSVTP D G I+ L+ LGF IE F KNL+A GT P
Sbjct: 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGD-----TKNLWATRGTGEP 56
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
L FAGH DVVP G W+ PPF +GK+YGRG DMKGS+A FI A RF+ K
Sbjct: 57 VLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNP 116
Query: 126 NF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
+ GSISLLIT DEEG AI+GTKK++ + + E D CIVGEP+ +GD IK GRRG
Sbjct: 117 DHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRG 176
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
S++G +TI G QGHVAYPHL NPI P L +LT I +D GN F PT+++IT I G
Sbjct: 177 SITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ NVIP ++ + FN+RF+ +++ LK+ + + I + L + + +S P F
Sbjct: 237 TGANNVIPGELYVQFNLRFSTEVSDEILKQRVEA-----ILDQHGLDYDLEWSLSGEP-F 290
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALNEN 363
LT+D KL ++I T G P LST GGTSD RFI V+EFG V T+H +NE
Sbjct: 291 LTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNATIHKVNEC 350
Query: 364 ASLQDLEDLTCIYENFLQN 382
S++DLE L+ +Y++ L+N
Sbjct: 351 VSIEDLEKLSDVYQDLLEN 369
>gnl|CDD|181522 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 394
Score = 207 bits (528), Expect = 6e-54
Identities = 131/404 (32%), Positives = 184/404 (45%), Gaps = 42/404 (10%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQD---GGAFFILVNTLKLLGFSIE----EKDFQTKNTSIV 53
M D +E L LIK P+V P L +TL+ LGFS E ++ K+
Sbjct: 4 MMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPR 63
Query: 54 KNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYP-PFSATIAEGKIYGRGIVDMKGSIAC 112
NL AR G+ PHL F GH DVVPPG+ W+ PF + +GK+YGRG DMKG IA
Sbjct: 64 PNLIARRGSGNPHLHFNGHYDVVPPGE--GWSVNVPFEPKVKDGKVYGRGASDMKGGIAA 121
Query: 113 FIAAVARFIPKYKNFGSISLLITGDEE--GPAINGTKKMLSWIEKKGEKWDACIVGEPTC 170
+AA R P G+I L I DEE G GT ++ E+ D IVGEP+
Sbjct: 122 LLAAFERLDPAGD--GNIELAIVPDEETGG---TGTGYLV---EEGKVTPDYVIVGEPS- 172
Query: 171 NHIIG-DTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFD-TGN 228
G D I IG RG + G + ++GKQ H + P L N + +L +
Sbjct: 173 ----GLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSK 228
Query: 229 TTFSPTNMEITTIDVGNP------SKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIK 282
+ T+ +G P N++P S + R + E EE+R L
Sbjct: 229 YEYDDERGAKPTVTLGGPTVEGGTKTNIVPGYCAFSIDRRL--IPEETA--EEVRDELEA 284
Query: 283 GIQNV-PKLSHTVHFS-SPVSPVFLT-HDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDAR 339
+ V P+L V F +P S F+T D +L L ++I G P + S G +DAR
Sbjct: 285 LLDEVAPELGIEVEFEITPFSEAFVTDPDSELVKALREAIREVLGVEPKKTISLGGTDAR 344
Query: 340 FIKDYC-PVIEFGLVGRTM-HALNENASLQDLEDLTCIYENFLQ 381
F P + +G + HA +E ++D+E +YE L+
Sbjct: 345 FFGAKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEVLK 388
>gnl|CDD|162596 TIGR01910, DapE-ArgE, acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase. This group of
sequences contains annotations for both acetylornithine
deacetylase and succinyl-diaminopimelate desuccinylase,
but does not contain any members with experimental
characterization. Bacillus, Staphylococcus and
Sulfolobus species contain multiple hits to this
subfamily and each may have a separate activity.
Determining which is which must await further laboratory
research.
Length = 375
Score = 180 bits (458), Expect = 6e-46
Identities = 109/391 (27%), Positives = 166/391 (42%), Gaps = 37/391 (9%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFI---LVNTLKLLGFSIEEKDFQTKNTSIV-KNLYARFG 61
+E L LI PSV P G I + + L+ GFS + + ++ K + G
Sbjct: 1 VELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPG 60
Query: 62 T-EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
L+F GH DVVP GD W PF +GK+YGRG DMKG + + A+
Sbjct: 61 NGNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAI 120
Query: 121 I-PKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKW-DACIVGEPTCNHIIGDTI 178
K G+I L DEE +G L +++ K D ++ EP+ GD I
Sbjct: 121 REAGIKPNGNIILQSVVDEE----SGEAGTLYLLQRGYFKDADGVLIPEPSG----GDNI 172
Query: 179 KIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTN----------IGFDTGN 228
IG +GS+ ++ + GKQ H ++P N I L L+ +L GF G
Sbjct: 173 VIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGP 232
Query: 229 TTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGI--QN 286
TF+P I G+ N +P + S ++R N +K+ I ++K + +
Sbjct: 233 ITFNP-----GVIKGGD-WVNSVPDYCEFSIDVRIIPEENLDEVKQIIED-VVKALSKSD 285
Query: 287 VPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKD-YC 345
+ P D +L L I G P + S G +DARF++
Sbjct: 286 GWLYENEPVVKWS-GPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTDARFLRKAGI 344
Query: 346 PVIEFGL-VGRTMHALNENASLQDLEDLTCI 375
P I +G T H +NE S+++L + T +
Sbjct: 345 PSIVYGPGDLETAHQVNEYISIKNLVESTKV 375
>gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 377
Score = 139 bits (352), Expect = 2e-33
Identities = 105/355 (29%), Positives = 159/355 (44%), Gaps = 53/355 (14%)
Query: 55 NLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFI 114
NL A G+ +P L +GH+DVV GD + WTY PF T +GK+YGRG DMK +A +
Sbjct: 50 NLVAEIGSGSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALV 109
Query: 115 AAVARF----IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKG--EKWDACIVGEP 168
A+ G+I LL T EE + G K++ +KG + DA I+GEP
Sbjct: 110 IAMIELKEQGQLLN---GTIRLLATAGEEVGEL-GAKQL----TEKGYADDLDALIIGEP 161
Query: 169 TCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDT-- 226
+ G I +GS+ ++T GK H + P L N I L+ ++ FD+
Sbjct: 162 S-----GHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQ-KEYFDSIK 215
Query: 227 -GNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIR----FNDLWNEKTLKEEIRSRLI 281
N +T I+ G N +P + ++ FNIR ++ N++ + S L
Sbjct: 216 KHNPYLGGLTHVVTIINGGE-QVNSVPDEAELEFNIRTIPEYD---NDQ-----VISLLQ 266
Query: 282 KGIQNV-----PKLSHTVHFSSPVSPVFLTHDRKLTSL---LSKSIYNTTGNIPLLSTSG 333
+ I V +LS ++ + PV D KL L ++KS IPL + G
Sbjct: 267 EIINEVNQNGAAQLSLDIYSNHR--PVASDKDSKLVQLAKDVAKSYVGQD--IPLSAIPG 322
Query: 334 GTSDARFIK---DYCPVIEFGL-VGRTMHALNENASLQDLEDLTCIYENFLQNWF 384
T + F+K D+ PVI FG T H ++E IY+ + +
Sbjct: 323 ATDASSFLKKKPDF-PVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKEIIIQYL 376
>gnl|CDD|181015 PRK07522, PRK07522, acetylornithine deacetylase; Provisional.
Length = 385
Score = 118 bits (298), Expect = 2e-27
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 55 NLYARFG-TEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACF 113
NL+A G + ++ +GH DVVP D WT PF T +G++YGRG DMKG IA
Sbjct: 54 NLFATIGPADRGGIVLSGHTDVVPV-DGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAA 112
Query: 114 IAAVARFI------PKYKNFGSISLLITGDEE-GPAINGTKKMLSWIEKKGEKWDACIVG 166
+AAV P + L + DEE G G M++ + ++G K CIVG
Sbjct: 113 LAAVPELAAAPLRRP-------LHLAFSYDEEVGCL--GVPSMIARLPERGVKPAGCIVG 163
Query: 167 EPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIG--- 223
EPT + +G +G + T+ G+ H + N I L+ L ++
Sbjct: 164 EPTSMRPV-----VGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRL 218
Query: 224 -----FDTGNTTFSP--TNMEITTIDVGNPSKNVIPAQVKMSFNIR 262
FD F P + ++ TI G + N++PA+ + F R
Sbjct: 219 AAPGPFDAL---FDPPYSTLQTGTIQGGT-ALNIVPAECEFDFEFR 260
>gnl|CDD|183836 PRK13004, PRK13004, peptidase; Reviewed.
Length = 399
Score = 116 bits (292), Expect = 1e-26
Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 44/308 (14%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT 62
D L LI+ PS + + + ++ +GF E D N+ G
Sbjct: 15 ADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPM-------GNVLGYIGH 67
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIP 122
+ F HID V GD +W + PF +G+IYGRG D KG +A + A I
Sbjct: 68 GKKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAK-IIK 126
Query: 123 KYKNFGSISLLITG-----DEEGPAINGTKKMLSW---IEKKGEKWDACIVGEPT-CNHI 173
+L +TG D +G L W IE+ K D ++ EPT N
Sbjct: 127 DLGLDDEYTLYVTGTVQEEDCDG---------LCWRYIIEEDKIKPDFVVITEPTDLN-- 175
Query: 174 IGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFS- 232
I G+RG + + G H + P +N I + P+L++L + + F
Sbjct: 176 ----IYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFLG 231
Query: 233 PTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLK---EEIRSRLIKGIQNVPK 289
+ ++ I +PS+ +P +S + R L +T + EIR+ + V K
Sbjct: 232 KGTLTVSDIFSTSPSRCAVPDSCAISIDRR---LTVGETWESVLAEIRA-----LPAVKK 283
Query: 290 LSHTVHFS 297
+ V
Sbjct: 284 ANAKVSMY 291
>gnl|CDD|183841 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 427
Score = 109 bits (274), Expect = 1e-24
Identities = 79/313 (25%), Positives = 131/313 (41%), Gaps = 36/313 (11%)
Query: 55 NLYARF--GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIAC 112
NL AR + + F H DVV G + WT PF + +G+IYGRG DMKG +A
Sbjct: 73 NLVARRQGARDGDCVHFNSHHDVVEVG--HGWTRDPFGGEVKDGRIYGRGACDMKGGLAA 130
Query: 113 FIAAVARFIPKYKNF-GSISLLITGDEEGPAINGTKKMLSWIEKKG----EKWDACIVGE 167
I A F+ Y +F GSI + T DEE G ++++ ++G ++ I+ E
Sbjct: 131 SIIAAEAFLAVYPDFAGSIEISGTADEESGGFGG----VAYLAEQGRFSPDRVQHVIIPE 186
Query: 168 PTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFD-- 225
P D I +G RG E+ G+ H + P L ++ IR + +L ++ F
Sbjct: 187 PLNK----DRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFPLL 242
Query: 226 TGNTTFSP--------TNMEITTIDVGNPSKNV---------IPAQVKMSFNIRFNDLWN 268
T P + + I +I G P ++ + + ++ + RF +
Sbjct: 243 ATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEED 302
Query: 269 EKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPL 328
+K EI + L + + P ++ + V P D + ++ +I G
Sbjct: 303 LDEVKAEITALLERLKRARPGFAYEIRDLFEVLPTMTDRDAPVVRSVAAAIERVLGRQAD 362
Query: 329 LSTSGGTSDARFI 341
S GT D + I
Sbjct: 363 YVVSPGTYDQKHI 375
>gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE).
This model represents a clade of acetylornithine
deacetylases from proteobacteria. This enzyme is the
final step of the "acetylated" ornithine biosynthesis
pathway. The enzyme is closely related to dapE,
succinyl-diaminopimelate desuccinylase, and outside of
this clade annotation is very inaccurate as to which
function should be ascribed to genes.
Length = 364
Score = 106 bits (266), Expect = 1e-23
Identities = 80/239 (33%), Positives = 111/239 (46%), Gaps = 25/239 (10%)
Query: 33 LKLLGFSIEEKDF-QTKNTSIVKNLYARFG-TEAPHLMFAGHIDVVPPGDFNHWTYPPFS 90
L+ LGFS+E + F S NL A G + A L +GH DVVP D WT PF
Sbjct: 28 LEALGFSVEVQPFPDGAEKS---NLVAVIGPSGAGGLALSGHTDVVP-YDDAAWTRDPFR 83
Query: 91 ATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGTKKML 150
T +G++YGRG DMKG +AC +AA A + + + L +T DEE G KM
Sbjct: 84 LTEKDGRLYGRGTCDMKGFLACALAA-APDLAAEQLKKPLHLALTADEE-VGCTGAPKM- 140
Query: 151 SWIEKKGEKWDACIVGEPTCNHIIGDTIKI-GRRGSLSGEITIHGKQGHVAYPHLTENPI 209
IE + I+GEPT I + +G S E+T+ G+ GH +YP N I
Sbjct: 141 --IEAGAGRPRHAIIGEPT------RLIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAI 192
Query: 210 RGLIPLLHQLT----NIGFDTGNTTFSP--TNMEITTIDVGNPSKNVIPAQVKMSFNIR 262
L +L + + + F+P T + I I G + N+IP + F R
Sbjct: 193 FRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWR 250
>gnl|CDD|184437 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional.
Length = 400
Score = 103 bits (259), Expect = 9e-23
Identities = 87/290 (30%), Positives = 121/290 (41%), Gaps = 52/290 (17%)
Query: 6 LEHLIQLIKCPSVTPQDGG------AFFILVNTLKLLGF-SIEEKDFQTKNTSIVK--NL 56
+E L +LI P+V P GG A ++ + LK GF +E D N+
Sbjct: 8 IELLSELIAIPAVNPDFGGEGEKEKAEYLE-SLLKEYGFDEVERYDAPDPRVIEGVRPNI 66
Query: 57 YAR--FGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVD-MKGSIACF 113
A+ G L H+DVVPPGD + W PF + +GKIYGRG D +G ++
Sbjct: 67 VAKIPGGDGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSL 126
Query: 114 IAAVARF----IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGE----KWDACIV 165
+A A PKY ++ L DEE G+K + ++ KK K D +V
Sbjct: 127 LALKALMDLGIRPKY----NLGLAFVSDEE----TGSKYGIQYLLKKHPELFKKDDLILV 178
Query: 166 ---GEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIR-------GLIPL 215
G P G I+I + L + T+ GKQ H + P N R L
Sbjct: 179 PDAGNPD-----GSFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEA 233
Query: 216 LHQ---LTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIR 262
LH+ + FD +TF PT E V N N IP + F+ R
Sbjct: 234 LHEKFNAKDPLFDPPYSTFEPTKKEAN---VDNI--NTIPGRDVFYFDCR 278
>gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional.
Length = 427
Score = 98.2 bits (245), Expect = 3e-21
Identities = 83/343 (24%), Positives = 132/343 (38%), Gaps = 47/343 (13%)
Query: 67 LMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMK-GSIACFIA----AVARFI 121
L+ GHIDVVP G + W+ PPF I +G +YGRG DMK G A A A
Sbjct: 100 LILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLA 159
Query: 122 PKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIG 181
P + +EE NG LS ++ +G + DAC++ EPT G+ +
Sbjct: 160 PA----ARVHFQSVIEEESTG-NGA---LSTLQ-RGYRADACLIPEPT-----GEKLVRA 205
Query: 182 RRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNI-----GFDTGNTTFS---- 232
+ G + + + G HV N I L+ L + + F
Sbjct: 206 QVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLIQALRELEAEWNARKASDPHFEDVPH 265
Query: 233 PTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSH 292
P N + I G+ + +V PA + I + EI + L ++ LS+
Sbjct: 266 PINFNVGIIKGGDWASSV-PAWCDLDCRIAIYPGVTAADAQAEIEACLAAAARDDRFLSN 324
Query: 293 TVHFSSPVSPVF---------LTHDRKLTSLLSKSIYNTTGNIPLLS-TSGGTSDARFIK 342
P V+ L + + L+++ + PL S + +D RF
Sbjct: 325 N-----PPEVVWSGFLAEGYVLEPGSEAEAALARA-HAAVFGGPLRSFVTTAYTDTRFYG 378
Query: 343 DY--CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNW 383
Y P + +G G +H +E L+ + +T F+ W
Sbjct: 379 LYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFVAEW 421
>gnl|CDD|116301 pfam07687, M20_dimer, Peptidase dimerization domain. This domain
consists of 4 beta strands and two alpha helices which
make up the dimerization surface of members of the M20
family of peptidases. This family includes a range of
zinc metallopeptidases belonging to several families in
the peptidase classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 107
Score = 97.4 bits (243), Expect = 6e-21
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
IG +G G +T+ GK GH P L N I+ L LL +L D G F T + IT
Sbjct: 1 IGHKGLAGGHLTVKGKAGHSGAPGLGVNAIKLLARLLAELPAEYGDIGF-DFPRTTLNIT 59
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRL 280
I+ G + NVIPA+ + F+IR + + L +EI + L
Sbjct: 60 GIEGGT-ATNVIPAEAEAKFDIRLLPGEDLEELLKEIEAIL 99
>gnl|CDD|132565 TIGR03526, selenium_YgeY, putative selenium metabolism hydrolase.
SelD, selenophosphate synthase, is the selenium donor
protein for both selenocysteine and selenouridine
biosynthesis systems, but it occurs also in a few
prokaryotes that have neither of those pathways. The
method of partial phylogenetic profiling, starting from
such orphan-selD genomes, identifies this protein as one
of those most strongly correlated to SelD occurrence.
Its distribution is also well correlated with that of
family TIGR03309, a putative accessory protein of labile
selenium (non-selenocysteine) enzyme maturation. This
family includes the uncharacterized YgeY of Escherichia
coli, and belongs to a larger family of metalloenzymes
in which some are known peptidases, others enzymes of
different types.
Length = 395
Score = 90.6 bits (225), Expect = 6e-19
Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 29/283 (10%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT 62
D + L L+ PS + +G + ++ LGF E D N+ G
Sbjct: 13 GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPM-------GNVLGYIGH 65
Query: 63 EAPHLM-FAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI 121
P L+ HID V GD + W + P+ E IYGRG D +G IA + A + I
Sbjct: 66 -GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYA-GKII 123
Query: 122 PKYKNFG---SISLLITGDEEGPAINGTKKMLSW---IEKKGEKWDACIVGEPTCNHIIG 175
K+ G +LL+TG + +G L W IE+ K + ++ EPT
Sbjct: 124 ---KDLGLLDDYTLLVTGTVQEEDCDG----LCWQYIIEEDKIKPEFVVITEPT-----D 171
Query: 176 DTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTF-SPT 234
I G+RG + ++T+ G H + P +N I + P+L +L+ + + F
Sbjct: 172 MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKG 231
Query: 235 NMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIR 277
+ ++ I +PS+ + +S + R + E+IR
Sbjct: 232 TLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIR 274
>gnl|CDD|181333 PRK08262, PRK08262, hypothetical protein; Provisional.
Length = 486
Score = 87.3 bits (217), Expect = 6e-18
Identities = 87/401 (21%), Positives = 141/401 (35%), Gaps = 109/401 (27%)
Query: 63 EAPHLMFAGHIDVVP--PGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR- 119
++ H DVVP PG WT+PPFS IA+G ++GRG +D KGS+ + A
Sbjct: 110 SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEAL 169
Query: 120 ----FIPKYKNFGSISLLITGDEE--GPAINGTKKMLSWIEKKGEKWDACI--------- 164
F P+ +I L DEE G G + + ++++G + +
Sbjct: 170 LAQGFQPR----RTIYLAFGHDEEVGGL---GARAIAELLKERGVRLAFVLDEGGAITEG 222
Query: 165 ----VGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYP--------------HLTE 206
V +P +IG + +G + E+T GH + P L +
Sbjct: 223 VLPGVKKPVA--LIG----VAEKGYATLELTARATGGHSSMPPRQTAIGRLARALTRLED 276
Query: 207 NP----IRGLI--------------------------PLLHQLTNIGFDTG---NTTFSP 233
NP +RG + PLL ++ +T TT +P
Sbjct: 277 NPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAP 336
Query: 234 TNMEITTIDVGNPSKNVIPAQVKMSFNIRF--NDLWNEKTLKEEIRSRLIKGIQNVPKLS 291
T ++ G+P NV+P + + N R D +R R + + ++
Sbjct: 337 TMLK------GSPKDNVLPQRATATVNFRILPGDSVESVL--AHVR-RAVADDRVEIEVL 387
Query: 292 HTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGN---IPLLSTSGGTSDARFIKDYCP-V 347
SPVS D LL+ +I + P L +D+R V
Sbjct: 388 GGNSEPSPVSST----DSAAYKLLAATIREVFPDVVVAPYLVVGA--TDSRHYSGISDNV 441
Query: 348 IEF------GLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
F H NE S+ + + Y ++N
Sbjct: 442 YRFSPLRLSPEDLARFHGTNERISVANYARMIRFYYRLIEN 482
>gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated.
Length = 422
Score = 87.1 bits (216), Expect = 8e-18
Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 9 LIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIE--EKD---------FQTKNTSIVK--N 55
L +LI+ SV+ + GA I++ L+ LG ++ E F + TS N
Sbjct: 23 LKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPN 82
Query: 56 LYARF-GT-EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMK-GSIAC 112
+ A G+ ++ GHIDVVP GD N W + P+S + G+IYGRG DMK G++A
Sbjct: 83 IVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVAL 142
Query: 113 FIAAVARFIPKYKNFGSISLLITGDEE-GPAINGTKKMLSWIEKKGEKWDACIVGEPTCN 171
+A A + G + +EE G A GT L+ I +G K D I+ EPT
Sbjct: 143 LLAMEALIESGIELKGDVIFQSVIEEESGGA--GT---LAAIL-RGYKADGAIIPEPTNM 196
Query: 172 HIIGDTIKIGRRGSLSGEITIHGKQGH 198
++GS+ + + GK H
Sbjct: 197 KFF-----PKQQGSMWFRLHVKGKAAH 218
>gnl|CDD|180418 PRK06133, PRK06133, glutamate carboxypeptidase; Reviewed.
Length = 410
Score = 86.6 bits (215), Expect = 1e-17
Identities = 92/360 (25%), Positives = 149/360 (41%), Gaps = 56/360 (15%)
Query: 28 ILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF-GTEAPHLMFAGHIDVV-PPGDFNHWT 85
+L LK LG +E S + A F GT +M H+D V PG
Sbjct: 65 LLAERLKALGAKVERAP---TPPSAGDMVVATFKGTGKRRIMLIAHMDTVYLPGMLAK-- 119
Query: 86 YPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPK---YKNFGSISLLITGDEEGPA 142
PF I + YG GI D KG +A + A+ I + +K++G++++L DEE +
Sbjct: 120 -QPFR--IDGDRAYGPGIADDKGGVAVILHALK--ILQQLGFKDYGTLTVLFNPDEETGS 174
Query: 143 INGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHV-AY 201
G++++ I + + D EP D + + G + + + GK H A
Sbjct: 175 P-GSREL---IAELAAQHDVVFSCEPG---RAKDALTLATSGIATALLEVKGKASHAGAA 227
Query: 202 PHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNI 261
P L N L L HQL + D G+ T + T G +NVIPA ++
Sbjct: 228 PELGRN---ALYELAHQLLQLR-DLGDPA-KGTTLNWTVAKAGTN-RNVIPASASAQADV 281
Query: 262 RFNDLWN----EKTLKEEIRSRLIKGIQNVPKLSHTVHF--------SSPVSPVFLTHDR 309
R+ D E L+E+++++L+ + T+ F ++ S H +
Sbjct: 282 RYLDPAEFDRLEADLQEKVKNKLVPDTEV------TLRFERGRPPLEANAASRALAEHAQ 335
Query: 310 KLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI--KDYCPVIE-FGLVGRTMHALNENASL 366
+ L + + P+ +GG +DA F V+E FGLVG H+ +E L
Sbjct: 336 GIYGELGRRL------EPIDMGTGGGTDAAFAAGSGKAAVLEGFGLVGFGAHSNDEYIEL 389
>gnl|CDD|183837 PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase;
Reviewed.
Length = 352
Score = 86.1 bits (214), Expect = 1e-17
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 68 MFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI-PKYKN 126
+ AGH+D VP D P ++YG G DMK +A + A P +
Sbjct: 65 VLAGHLDTVPVAD----NLPS---RREGDRLYGCGASDMKSGLAVMLHLAATLAEPAH-- 115
Query: 127 FGSISLLITGDEEGPAI-NGTKKMLSWIEKKGEKW---DACIVGEPTCNHIIGDTIKIGR 182
++L+ EE A NG L + ++ +W D I+ EPT I+ G
Sbjct: 116 --DLTLVFYDCEEVEAEANG----LGRLAREHPEWLAGDFAILLEPT-----DGVIEAGC 164
Query: 183 RGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEI---- 238
+G+L +T HG++ H A L EN I P+L +L + P + +
Sbjct: 165 QGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAA---------YEPREVVVDGLT 215
Query: 239 -------TTIDVGNPSKNVIPAQVKMSFNIRF 263
I G + NVIP + ++ N RF
Sbjct: 216 YREGLNAVRIS-GGVAGNVIPDECVVNVNYRF 246
>gnl|CDD|132363 TIGR03320, ygeY, M20/DapE family protein YgeY. Members of this
protein family, including the YgeY protein of
Escherichia coli, typically are found in extended
genomic regions associated with purine catabolism.
Homologs include peptidases and deacylases of the
M20/M25 /M40 and DapE/ArgE families. The function is
unknown.
Length = 395
Score = 86.0 bits (213), Expect = 1e-17
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 29/283 (10%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT 62
D + L L+ PS + + + ++ LGF E D N+ G
Sbjct: 13 GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPM-------GNVLGYIGH 65
Query: 63 EAPHLM-FAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI 121
P L+ HID V GD W + P+ E IYGRG D +G IA + A + I
Sbjct: 66 -GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYA-GKII 123
Query: 122 PKYKNFG---SISLLITGDEEGPAINGTKKMLSW---IEKKGEKWDACIVGEPTCNHIIG 175
K+ G +LL+TG + +G L W IE+ G K + ++ EPT
Sbjct: 124 ---KDLGLLDDYTLLVTGTVQEEDCDG----LCWQYIIEEDGIKPEFVVITEPT-----D 171
Query: 176 DTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTF-SPT 234
I G+RG + ++T+ G H + P +N I + P+L +L+ + + F
Sbjct: 172 MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGKG 231
Query: 235 NMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIR 277
+ ++ I +PS+ + +S + R + E+IR
Sbjct: 232 TLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIR 274
>gnl|CDD|179850 PRK04443, PRK04443, acetyl-lysine deacetylase; Provisional.
Length = 348
Score = 85.0 bits (211), Expect = 3e-17
Identities = 79/350 (22%), Positives = 123/350 (35%), Gaps = 67/350 (19%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFS--IEEKDFQTKNTSIVKNLYA 58
+ E L L++ PS + ++ A LV ++ G ++E N
Sbjct: 4 SALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE----------AGNARG 53
Query: 59 RFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVA 118
G P ++ GHID VP GD P + +G ++GRG VD KG +A F AA A
Sbjct: 54 PAGDGPPLVLLLGHIDTVP-GDI-----PVR---VEDGVLWGRGSVDAKGPLAAFAAAAA 104
Query: 119 RFIPKYKNFGSISLLITG--DEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIG- 175
R + G +EE P + + + E+ DA I+GEP+ G
Sbjct: 105 RLEAL----VRARVSFVGAVEEEAP----SSGGARLVADR-ERPDAVIIGEPS-----GW 150
Query: 176 DTIKIGRRGSLSGEITIHGKQGHVAYP------HLTE--NPIRGLIPLLHQLTNIGFDTG 227
D I +G +G L + H A P E + FD
Sbjct: 151 DGITLGYKGRLLVTYVATSESFHSAGPEPNAAEDAIEWWLAVEAWFEANDGRER-VFDQV 209
Query: 228 NTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNV 287
+ D + V + +M+ +R + + +E + + L G
Sbjct: 210 TPK-------LVDFDSSSDGLTV---EAEMTVGLRLPPGLSPEEAREILDALLPTG---- 255
Query: 288 PKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSD 337
TV F+ V ++ L +I G P L GTSD
Sbjct: 256 -----TVTFTGAVPAYMVSKRTPLARAFRVAIREAGGT-PRLKRKTGTSD 299
>gnl|CDD|179939 PRK05111, PRK05111, acetylornithine deacetylase; Provisional.
Length = 383
Score = 84.9 bits (211), Expect = 3e-17
Identities = 71/225 (31%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 3 PDCLEHLIQLIKCPSVTPQD-----GGAFFI--LVNTLKLLGFSIEEKDFQTKNTSIVKN 55
P +E LI PS++ D I L + LGF++E + T N
Sbjct: 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQ--PVPGTRGKFN 62
Query: 56 LYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIA 115
L A G+ L+ AGH D VP D WT PF+ T +GK+YG G DMKG A FI
Sbjct: 63 LLASLGSGEGGLLLAGHTDTVP-FDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFA-FIL 120
Query: 116 AVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIG 175
R I K + +L T DEE ++ G + ++ E + D I+GEPT +
Sbjct: 121 EALRDIDLTKLKKPLYILATADEE-TSMAGAR---AFAEATAIRPDCAIIGEPTSLKPV- 175
Query: 176 DTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGL--IPLLHQ 218
+G +S I I G+ GH + +P G+ I L+H
Sbjct: 176 ----RAHKGHMSEAIRITGQSGH------SSDPALGVNAIELMHD 210
>gnl|CDD|181544 PRK08737, PRK08737, acetylornithine deacetylase; Provisional.
Length = 364
Score = 82.2 bits (203), Expect = 2e-16
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 6 LEHLIQLIKCPSVTP----QDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFG 61
L+HL L+ + P GG F L +L GF +E D S LYA G
Sbjct: 9 LDHLQALVSFDTRNPPRAITTGGIFDYL--RAQLPGFQVEVIDHGAGAVS----LYAVRG 62
Query: 62 TEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI 121
T P +F H+D VP D HW+ P + ++ G G+ D+KG+ A +AA
Sbjct: 63 T--PKYLFNVHLDTVP--DSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAAN--- 115
Query: 122 PKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIG 181
G + L + DEE L +G ++A +V EPT + + +
Sbjct: 116 ---AGDGDAAFLFSSDEEANDPRCVAAFL----ARGIPYEAVLVAEPTMSEAV-----LA 163
Query: 182 RRGSLSGEITIHGKQGHVAYPH-LTENPI 209
RG S + G+ GH + + + +
Sbjct: 164 HRGISSVLMRFAGRAGHASGKQDPSASAL 192
>gnl|CDD|166979 PRK00466, PRK00466, acetyl-lysine deacetylase; Validated.
Length = 346
Score = 81.4 bits (201), Expect = 3e-16
Identities = 76/323 (23%), Positives = 127/323 (39%), Gaps = 49/323 (15%)
Query: 65 PHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKY 124
++ A H+D VP G I IYGRG VD KG + I +A ++
Sbjct: 61 GDILLASHVDTVP-GYIE--------PKIEGEVIYGRGAVDAKGPLISMI--IAAWLLNE 109
Query: 125 KNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
K + + DEE +I G K+++S KG + IVGEP+ G I + RG
Sbjct: 110 KGI-KVMVSGLADEESTSI-GAKELVS----KGFNFKHIIVGEPSN----GTDIVVEYRG 159
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
S+ +I G H + N I + + ++ + + PT +
Sbjct: 160 SIQLDIMCEGTPEHSSSA--KSNLIVDISKKIIEVYKQPENYDKPSIVPTIIRAGE---- 213
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRL----IKGIQNVPKLSHTVHFSSPV 300
S NV PA++ + F++R+ L EI+ + +K + P + V ++PV
Sbjct: 214 --SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQECGLKIVDETPPVK--VSINNPV 269
Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTM--H 358
+ +LL ++I P L GTSD ++ I G +M H
Sbjct: 270 VKAL------MRALLKQNIK------PRLVRKAGTSDMNILQKITTSIATYGPGNSMLEH 317
Query: 359 ALNENASLQDLEDLTCIYENFLQ 381
E +L ++ Y ++
Sbjct: 318 TNQEKITLDEIYIAVKTYMLAIE 340
>gnl|CDD|162581 TIGR01887, dipeptidaselike, dipeptidase, putative. This model
represents a clade of probable zinc dipeptidases,
closely related to the characterized non-specific
dipeptidase, PepV. Many enzymes in this clade have been
given names including the terms "Xaa-His" and
"carnosinase" due to the early mis-characterization of
the Lactobacillus delbrueckii PepV enzyme. These names
are likely too specific.
Length = 447
Score = 79.7 bits (197), Expect = 1e-15
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 39 SIEEKD-FQTKNTSIVKNL--YARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE 95
+ ++D F T+N V N YA +G +L GH+DVVP GD WT PPF A I +
Sbjct: 42 ELAKRDGFTTEN---VDNYAGYAEYGQGEEYLGILGHLDVVPAGD--GWTSPPFEAEIKD 96
Query: 96 GKIYGRGIVDMKG-SIACFIA 115
G+IYGRG +D KG +IA A
Sbjct: 97 GRIYGRGTLDDKGPTIAALYA 117
Score = 38.5 bits (90), Expect = 0.003
Identities = 46/210 (21%), Positives = 69/210 (32%), Gaps = 34/210 (16%)
Query: 189 EITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN-----------ME 237
IT+ GK H + P N L L QL G F ++
Sbjct: 246 TITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGID 305
Query: 238 ITTIDVGNPSKNV------IPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLS 291
G+ + NV + N+R+ N+ +K
Sbjct: 306 FHDDVSGDLTMNVGVIDYENAEAGLIGLNVRYPVG-NDPDTM-------LKNELAKESGI 357
Query: 292 HTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTG-NIPLLSTSGGTSDARFIKDYCPVIEF 350
V + + P+++ D L L K TG ++ GGT AR +++ + F
Sbjct: 358 VEVTENGYLKPLYVPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGTY-ARLMEN---GVAF 413
Query: 351 G--LVGR--TMHALNENASLQDLEDLTCIY 376
G G TMH NE + DL T IY
Sbjct: 414 GALFPGEEDTMHQANEYIMIDDLLLATAIY 443
>gnl|CDD|181523 PRK08652, PRK08652, acetylornithine deacetylase; Provisional.
Length = 347
Score = 79.8 bits (197), Expect = 1e-15
Identities = 64/260 (24%), Positives = 100/260 (38%), Gaps = 34/260 (13%)
Query: 5 CLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSI-EEKDFQTKNTSIVKNLYARFGTE 63
E L QL+K PS + Q+ ++ L+ LG+ + E D + N IV N
Sbjct: 4 AKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVIN--IVVN-------S 54
Query: 64 APHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPK 123
L H D VP F + +YG G D KG +A + A+ +
Sbjct: 55 KAELFVEVHYDTVPV------RAEFF---VDGVYVYGTGACDAKGGVAAILLALEELGKE 105
Query: 124 YKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRR 183
+++ + + DEE G + + E+ K IV EPT + I
Sbjct: 106 FEDLN-VGIAFVSDEE----EGGRGSALFAERYRPKM--AIVLEPT-----DLKVAIAHY 153
Query: 184 GSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243
G+L + + GK H A P N I +L +L + F P ++ I I
Sbjct: 154 GNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKEL-LKALGKYFDP-HIGIQEIIG 211
Query: 244 GNPSKNVIPAQVKMSFNIRF 263
G+P IPA ++ + R
Sbjct: 212 GSPEY-SIPALCRLRLDARI 230
>gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated.
Length = 421
Score = 79.3 bits (196), Expect = 2e-15
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 33 LKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSAT 92
L+ LGFS+++ D + ++V L+ GH+DV W PF T
Sbjct: 46 LRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPT 105
Query: 93 IAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISL---LI----TGDEEGPAING 145
I +G +YGRG DMKG +A + A+ + I L LI G+E G A G
Sbjct: 106 IKDGWLYGRGAADMKGGLAGALFAIQLL-----HEAGIELPGDLIFQSVIGEEVGEA--G 158
Query: 146 TKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGH 198
T + ++G D +V + + H+ G+ G ++G IT+ Q
Sbjct: 159 TLQCC----ERGYDADFAVVVDTSDLHM------QGQGGVITGWITVKSPQTF 201
>gnl|CDD|180882 PRK07205, PRK07205, hypothetical protein; Provisional.
Length = 444
Score = 76.3 bits (188), Expect = 1e-14
Identities = 114/456 (25%), Positives = 165/456 (36%), Gaps = 116/456 (25%)
Query: 4 DCLEHLIQLIKCPSVTP--QDGGAF-----FILVNTLKL---LGFS--IEEKDFQTKNTS 51
C+ + L+ PSV ++G F +L TL L LGF ++ K +
Sbjct: 12 ACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYG---- 67
Query: 52 IVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKG-SI 110
YA G L H+DVVP GD + W PPF A +G ++GRG D KG S+
Sbjct: 68 -----YAEIGQGEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSM 122
Query: 111 ACFIAAVA------------RFIPKYKNFGS------------------ISLLITGDEEG 140
A A A RFI FG+ ++ D
Sbjct: 123 AALYAVKALLDAGVQFNKRIRFI-----FGTDEETLWRCMNRYNEVEEQATMGFAPDSSF 177
Query: 141 PAINGTKKML-SWIEKKGEKWDACIVGE-------------PTCNHIIGDTIKIGRRGSL 186
P K +L + + G VG+ P + + K+G +
Sbjct: 178 PLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVV 237
Query: 187 SG-EITIHGKQGHVA-YPHLTENPIRGLIPLLHQLTN---------IGFD-TGNTTFSPT 234
E+T+ GK H P IR L+ + IG D TG F
Sbjct: 238 KENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDI 297
Query: 235 NMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKT-LKEEIR-SRLIKGIQNVPKLS- 291
E PS K+SFNI + EK+ ++ +IR L + V +LS
Sbjct: 298 EDE--------PSG-------KLSFNIAGLTITKEKSEIRIDIRIPVLADKEKLVQQLSQ 342
Query: 292 -------HTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY 344
F ++P+++ D +L S L TG+ +SGG + AR +
Sbjct: 343 KAQEYGLTYEEFDY-LAPLYVPLDSELVSTLMSVYQEKTGDDSPAQSSGGATFARTM-PN 400
Query: 345 CPVIEFG--LVGR--TMHALNENASLQDLEDLTCIY 376
C + FG G T H NE+ L+DL IY
Sbjct: 401 C--VAFGALFPGAPQTEHQANEHIVLEDLYRAMDIY 434
>gnl|CDD|180564 PRK06446, PRK06446, hypothetical protein; Provisional.
Length = 436
Score = 74.4 bits (183), Expect = 5e-14
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 4 DCLEHLIQLIKCPSVTPQ----DGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYAR 59
+ L LI+ +K PS++ + A + L +T++ LG I+ +TK +V Y
Sbjct: 3 EELYTLIEFLKKPSISATGEGIEETANY-LKDTMEKLG--IKANIERTKGHPVV---YGE 56
Query: 60 FGTEAPH-LMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVA 118
A L+ H DV P + W PFSATI G+IY RG D KG++ + A+
Sbjct: 57 INVGAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIK 116
Query: 119 RFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIV----------GEP 168
I K+K ++ L G+EE + N + +IEK K A V G P
Sbjct: 117 HLIDKHKLNVNVKFLYEGEEEIGSPN----LEDFIEKNKNKLKADSVIMEGAGLDPKGRP 172
Query: 169 TCNHIIGDTIKIGRRGSLSGEIT--IHGKQGHVAYPHLTENPIRGLIPLLHQL 219
I +G +G L E+ K H + + NP L+ LL L
Sbjct: 173 --------QIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTL 217
>gnl|CDD|180927 PRK07318, PRK07318, dipeptidase PepV; Reviewed.
Length = 466
Score = 74.5 bits (184), Expect = 5e-14
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 39 SIEEKD-FQTKNTSIVKNL--YARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE 95
I E+D F+TKN V N + +G L GH+DVVP GD W P+ I +
Sbjct: 54 EIAERDGFKTKN---VDNYAGHIEYGEGEEVLGILGHLDVVPAGD--GWDTDPYEPVIKD 108
Query: 96 GKIYGRGIVDMKG-SIACFIA 115
GKIY RG D KG ++A + A
Sbjct: 109 GKIYARGTSDDKGPTMAAYYA 129
>gnl|CDD|181666 PRK09133, PRK09133, hypothetical protein; Provisional.
Length = 472
Score = 74.3 bits (183), Expect = 6e-14
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 55 NLYARF---GTEAPHLMFAGHIDVV--PPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGS 109
NL AR + P ++ H+DVV D WT PF G YGRG D K
Sbjct: 90 NLVARLRGTDPKKP-ILLLAHMDVVEAKRED---WTRDPFKLVEENGYFYGRGTSDDKAD 145
Query: 110 IACFIAAVARFIPKYKNFG---SISLLITGDEEGPAINGTKKMLSW-IEKKGEKWDA 162
A ++A + R K + F I L +TGDEEG +NG +W E + DA
Sbjct: 146 AAIWVATLIRL--KREGFKPKRDIILALTGDEEGTPMNGV----AWLAENHRDLIDA 196
>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
Length = 456
Score = 68.6 bits (168), Expect = 2e-12
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 36/237 (15%)
Query: 6 LEHLIQLIKCPSVTP-----QD-GGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYAR 59
LE L + ++ PS++ +D A L L+ G E +T IV YA
Sbjct: 17 LEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEI-METAGHPIV---YAD 72
Query: 60 F--GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV 117
+ P ++ GH DV P N W PPF TI +GK+Y RG D KG + + AV
Sbjct: 73 WLHAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAV 132
Query: 118 ARFIPKYKNFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGD 176
+ ++ I G+EE G+ + S++E++ +K A +V +I D
Sbjct: 133 EALLKVEGTLPVNVKFCIEGEEE----IGSPNLDSFVEEEKDKLAADVV-------LISD 181
Query: 177 T---------IKIGRRGSLSGEITIHGKQGHV---AYPHLTENPIRGLIPLLHQLTN 221
T I G RG + EI + G +G + Y N + L+ LL L +
Sbjct: 182 TTLLGPGKPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHD 238
>gnl|CDD|169481 PRK08554, PRK08554, peptidase; Reviewed.
Length = 438
Score = 67.9 bits (166), Expect = 4e-12
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 56 LYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIA 115
+Y G P L+F H DVVP W PF T+ K YGRG D KG++A +
Sbjct: 55 VYGEIGEGKPKLLFMAHFDVVPVNP-EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVML 113
Query: 116 AVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKK 156
A+ + N G + TGDEE I G M I +K
Sbjct: 114 ALKELSKEPLN-GKVIFAFTGDEE---IGG--AMAMHIAEK 148
>gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional.
Length = 426
Score = 67.2 bits (165), Expect = 7e-12
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 55 NLYARF-GT--EAPHLMFAGHIDVVP--PGDFNHWTYPPFSATIAEGKIYGRGIVDMKGS 109
N+ AR G P L+ GH+DVVP D W+ PFS I +G ++GRG VDMK
Sbjct: 53 NVVARLPGADPSRPALLVHGHLDVVPAEAAD---WSVHPFSGEIRDGYVWGRGAVDMKDM 109
Query: 110 IACFIAAVAR 119
A + AV R
Sbjct: 110 DA-MMLAVVR 118
>gnl|CDD|130955 TIGR01900, dapE-gram_pos, succinyl-diaminopimelate desuccinylase.
This enzyme is involved in the biosynthesis of lysine,
and is related to the enzyme acetylornithine deacetylase
and other amidases and peptidases found within
pfam01546.
Length = 373
Score = 66.6 bits (162), Expect = 9e-12
Identities = 71/285 (24%), Positives = 112/285 (39%), Gaps = 56/285 (19%)
Query: 9 LIQLIKCPSVTPQDG---GAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
L Q++ S + +G +N L+L G + F+ + + + FG +A
Sbjct: 2 LQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEV----FRFGDNVLART---DFG-KAS 53
Query: 66 HLMFAGHIDVVPPGDF--NHWTYPPFS--------ATIAEGKIYGRGIVDMKGSIACFI- 114
++ AGHID VP D W P S A +G ++G G DMK A +
Sbjct: 54 RVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLH 113
Query: 115 --AAVARFIPKYKNFGSISLLITGDEEGPA-INGTKKMLSWIEKKGEKW---DACIVGEP 168
A + P+ + ++L+ EE A NG I W D I+GEP
Sbjct: 114 LAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGH----IRDAHPDWLAADFAIIGEP 169
Query: 169 TCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGN 228
T G I+ G G++ ++T HG H A L +N I ++++L
Sbjct: 170 T-----GGGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKL--------- 215
Query: 229 TTFSPTNMEITTIDV----------GNPSKNVIPAQVKMSFNIRF 263
+ + I +D G + NVIP + +M N RF
Sbjct: 216 AAYEAAEVNIDGLDYREGLNATFCEGGKANNVIPDEARMHLNFRF 260
>gnl|CDD|180938 PRK07338, PRK07338, hypothetical protein; Provisional.
Length = 402
Score = 65.8 bits (161), Expect = 2e-11
Identities = 80/323 (24%), Positives = 124/323 (38%), Gaps = 41/323 (12%)
Query: 63 EAP-HLMFAGHIDVVPPGDFNHWTYPPFSA--TIAEGKIYGRGIVDMKGSIACFIAAVAR 119
EAP ++ GH+D V P D H PF + +G + G G+ DMKG I +AA+
Sbjct: 90 EAPRQVLLTGHMDTVFPAD--H----PFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLA 143
Query: 120 F--IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDT 177
F P G +LI DEE G+ + + A + EP + T
Sbjct: 144 FERSPLADKLG-YDVLINPDEE----IGSPASAPLLAELARGKHAALTYEPA---LPDGT 195
Query: 178 IKIGRRGSLSGEITIHGKQGHVAY-PHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNM 236
+ R+GS + I + G+ H N I L L + T +
Sbjct: 196 LAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALALHALNGQRDGVTVNVAK- 254
Query: 237 EITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVH- 295
ID G P NV+P + FNIR + + E++ +LI + +S +H
Sbjct: 255 ----IDGGGPL-NVVPDNAVLRFNIRPPTPEDAAWAEAELK-KLIAQVNQRHGVSLHLHG 308
Query: 296 -FSSPVSPVFLTHDRKLTSLLSKSIYNTTG---NIPL-LSTSGGTSDARFIKDY-CPVIE 349
F P P+ R L + G + + SGG D + PV++
Sbjct: 309 GFGRPPKPIDAAQQR-LFEAVQA-----CGAALGLTIDWKDSGGVCDGNNLAAAGLPVVD 362
Query: 350 -FGLVGRTMHALNENASLQDLED 371
G+ G +H+ +E L L +
Sbjct: 363 TLGVRGGNIHSEDEFVILDSLVE 385
>gnl|CDD|181650 PRK09104, PRK09104, hypothetical protein; Validated.
Length = 464
Score = 63.8 bits (156), Expect = 8e-11
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 48/220 (21%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFF--------ILVNTLKLLGFSIEEKDFQTKNTSIVK 54
LE L L++ PS++ A+ LV L LGF +D T +V
Sbjct: 17 DASLERLFALLRIPSISTDP--AYAADCRKAADWLVADLASLGFEASVRD--TPGHPMVV 72
Query: 55 NLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE----GK-IYGRGIVDMKGS 109
+ +APH++F GH DV P + W PPF I E K I RG D KG
Sbjct: 73 AHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQ 132
Query: 110 IACFIAAVARF------IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDAC 163
+ F+ A + +P +++L G+EE +G+ ++ ++E E+ A
Sbjct: 133 LMTFVEACRAWKAVTGSLP-----VRVTILFEGEEE----SGSPSLVPFLEANAEELKAD 183
Query: 164 IVGEPTCNHIIGDT---------IKIGRRGSLSGEITIHG 194
+ ++ DT I RG + E+TI
Sbjct: 184 VA-------LVCDTGMWDRETPAITTSLRGLVGEEVTITA 216
>gnl|CDD|130957 TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-acetyl-lysine
deacetylase. This clade of mainly archaeal and related
bacterial species contains two characterized enzymes, an
deacetylase with specificity for both N-acetyl-ornithine
and N-acetyl-lysine from Thermus which is found within a
lysine biosynthesis operon, and a fusion protein with
acetyl-glutamate kinase (an enzyme of ornithine
biosynthesis) from Lactobacillus. It is possible that
all of the sequences within this clade have dual
specificity, or that a mix of specificities have evolved
within this clade.
Length = 336
Score = 62.6 bits (152), Expect = 2e-10
Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 55/285 (19%)
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
G ++ AGH+D VP + P I G +YGRG VD KG + I A
Sbjct: 47 GDGHKKILLAGHVDTVP----GYI--PV---KIEGGLLYGRGAVDAKGPLIAMIFATWLL 97
Query: 121 IPKYKNFGSISLLITG--DEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTI 178
K I ++++G DEE + G ++++ IVGEP+ + I
Sbjct: 98 NEK-----GIKVIVSGLVDEESSSK-GAREVIDKNYPF-----YVIVGEPSG----AEGI 142
Query: 179 KIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEI 238
+G +GSL +I G H + N LI ++ + N + ++
Sbjct: 143 TLGYKGSLQLKIMCEGTPFHSSS---AGNAAELLIDYSKKIIEVYKQPEN--YDKPSIVP 197
Query: 239 TTIDVGNPSKNVIPAQVKMSFNIRF------NDLWNEKTLKEEIRSRLIKGIQNVPKLSH 292
T I G S N PA++++ F++R+ + E T K I ++ + P +
Sbjct: 198 TIIRFGE-SYNDTPAKLELHFDLRYPPNNKPEEAIKEITDKFPIC---LEIVDETP--PY 251
Query: 293 TVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSD 337
V ++P+ F+ RK G P L GTSD
Sbjct: 252 KVSRNNPLVRAFVRAIRKQ------------GMKPRLKKKTGTSD 284
>gnl|CDD|181164 PRK07907, PRK07907, hypothetical protein; Provisional.
Length = 449
Score = 62.2 bits (152), Expect = 2e-10
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 64 APHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPK 123
AP ++ H DV PPGD + W PPF T +G++YGRG D KG IA +AA+
Sbjct: 83 APTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRALGGD 142
Query: 124 YKNFGSISLLITGDEE 139
+++ + G+EE
Sbjct: 143 LPV--GVTVFVEGEEE 156
>gnl|CDD|162584 TIGR01891, amidohydrolases, amidohydrolase. This model represents
a subfamily of amidohydrolases which are a subset of
those sequences detected by pfam01546. Included within
this group are hydrolases of hippurate
(N-benzylglycine), indoleacetic acid (IAA) N-conjugates
of amino acids, N-acetyl-L-amino acids and
aminobenzoylglutamate. These hydrolases are of the
carboxypeptidase-type, most likely utilizing a zinc ion
in the active site.
Length = 363
Score = 60.4 bits (147), Expect = 7e-10
Identities = 59/268 (22%), Positives = 100/268 (37%), Gaps = 37/268 (13%)
Query: 28 ILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAPHLMFA--GHIDVVPPGDFNHWT 85
++ L+ LG + + A G P + A +D +P +
Sbjct: 24 LIAEALESLGIEVRRG-VGGATGVV-----ATIGGGKPGPVVALRADMDALPIQEQTDL- 76
Query: 86 YPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNF--GSISLLITGDEEGPAI 143
P+ +T G ++ G D+ +I A + K + G++ L+ EEG
Sbjct: 77 --PYKSTN-PGVMHACG-HDLHTAIL-LGTAKL--LKKLADLLEGTVRLIFQPAEEGGG- 128
Query: 144 NGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSG----EITIHGKQGHV 199
G KM IE I+G I T+ + ++ E+TIHGK H
Sbjct: 129 -GATKM---IEDGVLDDVDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHA 184
Query: 200 AYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSF 259
A PHL + + L+ L I + + + I+ G NVIP + MS
Sbjct: 185 ARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVV-TVGIIEAGGAP-NVIPDKASMSG 242
Query: 260 NIRFNDLWNEKTLKEEIRSRLIKGIQNV 287
+R +L E+R ++I I+ +
Sbjct: 243 TVR--------SLDPEVRDQIIDRIERI 262
>gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV. This model represents a
small clade of dipeptidase enzymes which are members of
the larger M25 subfamily of metalloproteases. Two
characterized enzymes are included in the seed. One,
from Lactococcus lactis has been shown to act on a wide
range of dipeptides, but not larger peptides. The enzyme
from Lactobacillus delbrueckii was originally
characterized as a Xaa-His dipeptidase, specifically a
carnosinase (beta-Ala-His) by complementation of an E.
coli mutant. Further study, including the
crystallization of the enzyme, has shown it to also be a
non-specific dipeptidase. This group also includes
enzymes from Streptococcus and Enterococcus.
Length = 466
Score = 56.8 bits (137), Expect = 1e-08
Identities = 34/81 (41%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 39 SIEEKD-FQTKNTSIVKNLYAR--FGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE 95
S E+D F TKN N +G L GH+DVVP G+ WT PF I E
Sbjct: 53 SFAERDGFTTKN---FDNYAGHVEYGAGDERLGIIGHMDVVPAGE--GWTRDPFEPEIDE 107
Query: 96 GKIYGRGIVDMKG-SIACFIA 115
G+IY RG D KG S+A + A
Sbjct: 108 GRIYARGASDDKGPSLAAYYA 128
>gnl|CDD|162577 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase.
This model represents a family of eukaryotic
N-acyl-L-amino-acid amidohydrolases active on fatty acid
and acetyl amides of L-amino acids.
Length = 400
Score = 56.3 bits (136), Expect = 1e-08
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYPPFSATI-AEGKIYGRGIVDMKGSIACFIAAVAR-F 120
E P ++ H DVVP HWT+PPFSA +G IY RG DMK ++ AV
Sbjct: 70 ELPSILLNSHTDVVPVFR-EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLK 128
Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKK 148
+K +I + DEE +G +K
Sbjct: 129 ASGFKFKRTIHISFVPDEEIGGHDGMEK 156
>gnl|CDD|162579 TIGR01883, PepT-like, peptidase T-like protein. This model
represents a clade of enzymes closely related to
Peptidase T, an aminotripeptidase found in bacteria.
This clade consists of gram positive bacteria of which
several additionally contain a Peptidase T gene.
Length = 361
Score = 50.3 bits (120), Expect = 9e-07
Identities = 77/374 (20%), Positives = 129/374 (34%), Gaps = 29/374 (7%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF-GT-E 63
++ ++LI+ S + ++ L + LG + + + S NL AR GT +
Sbjct: 3 KKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAE-VSNDNNLIARLPGTVK 61
Query: 64 APHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPK 123
+ F GH+D VPPG T G I G D K +A + A+ +
Sbjct: 62 FDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILG---ADDKAGVAAMLEAMDVLSTE 118
Query: 124 YKNFGSISLLITGDEEGPAINGTKKMLSWIE-KKGEKWDACIVGEPTCNHIIGDTIKIGR 182
G+I + T EE I S I G DA GE +G I++
Sbjct: 119 ETPHGTIEFIFTVKEELGLIGMRLFDESKITAAYGYCLDA--PGE------VG-NIQLAA 169
Query: 183 RGSLSGEITIHGKQGHVAY-PHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTI 241
+ + TI GK H P + I +H + D T I +
Sbjct: 170 PTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRIDEETTA------NIGSF 223
Query: 242 DVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVS 301
G + V Q+ ++ + + + ++++ + Q K T+ + +
Sbjct: 224 SGGVNTNIVQDEQLIVAEARSLSF----RKAEAQVQTMRERFEQAAEKYGATLEEETRLI 279
Query: 302 -PVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHA 359
F H + + K G SGG SDA + + P + H
Sbjct: 280 YEGFKIHPQHPLMNIFKKAAKKIGLKTSEIFSGGGSDANVLNEKGVPTVNLSAGYVHAHT 339
Query: 360 LNENASLQDLEDLT 373
E S++ L L
Sbjct: 340 EKETISIEQLVKLA 353
>gnl|CDD|180826 PRK07079, PRK07079, hypothetical protein; Provisional.
Length = 469
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYP--PFSATIAEGKIYGRGIVDMKGSIACFIAAVA 118
P ++ GH DVV G W P++ T + YGRG D KG +AA+
Sbjct: 84 ALPTVLIYGHGDVVR-GYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALE 140
>gnl|CDD|168961 PRK07473, PRK07473, carboxypeptidase; Provisional.
Length = 376
Score = 37.8 bits (88), Expect = 0.005
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 58 ARF---GTEAPHLMFAGHIDVVPP-GDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACF 113
ARF P ++ AGH+D V P G T K YG GI+DMKG
Sbjct: 66 ARFPHPRQGEPGILIAGHMDTVHPVG-----TLEKLPWRREGNKCYGPGILDMKGGNYLA 120
Query: 114 IAAVARFI-PKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEP 168
+ A+ + I++L T DEE GT IE + + +V EP
Sbjct: 121 LEAIRQLARAGITTPLPITVLFTPDEE----VGTPSTRDLIEAEAARNKYVLVPEP 172
>gnl|CDD|183818 PRK12893, PRK12893, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 32.9 bits (76), Expect = 0.14
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 32/197 (16%)
Query: 189 EITIHGKQGHV-AYP-HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNP 246
E+T+ G+ H P + + + ++ + I + T + V
Sbjct: 218 EVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAALAPDGVA-TVGRL---RVEPN 273
Query: 247 SKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNV---PKLSHTVHFSSPVSPV 303
S+NVIP +V + +IR D + + + L + + TV PV
Sbjct: 274 SRNVIPGKVVFTVDIRHPD----DARLDAMEAALRAACAKIAAARGVQVTVETVWDFPPV 329
Query: 304 FLTHDRKLTSLL---SKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLV------G 354
D L +L+ ++++ + + SG DA F+ P ++ G
Sbjct: 330 --PFDPALVALVEAAAEALGLSHMRMV----SGAGHDAMFLARVAPA---AMIFVPCRGG 380
Query: 355 RTMHALNENASLQDLED 371
+ H E+ DL
Sbjct: 381 IS-HNEAEDTEPADLAA 396
Score = 27.9 bits (63), Expect = 4.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 55 NLYARF-GTE--APHLMFAGHIDVVPPG 79
NL+ R GT+ AP ++ H+D P G
Sbjct: 64 NLFGRRAGTDPDAPPVLIGSHLDTQPTG 91
>gnl|CDD|180432 PRK06156, PRK06156, hypothetical protein; Provisional.
Length = 520
Score = 31.9 bits (73), Expect = 0.28
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 72 HIDVVP--PGDF--NHWTYPPFSATIAEGKIYGRGIVDMKGSIA 111
H DVVP P + + PF T+ ++YGRG D KG+I
Sbjct: 117 HADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIV 160
>gnl|CDD|178296 PLN02693, PLN02693, IAA-amino acid hydrolase.
Length = 437
Score = 31.2 bits (70), Expect = 0.47
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 37/214 (17%)
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIP 122
E P + +D +P + W + GK++ G G +A + A A+ +
Sbjct: 101 EPPFVALRADMDALPIQEAVEWEHKSKIP----GKMHACG---HDGHVAMLLGA-AKILQ 152
Query: 123 KYKNF--GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
++++ G++ L+ EEG ++G KKM E+ K I G +
Sbjct: 153 EHRHHLQGTVVLIFQPAEEG--LSGAKKMR---EEGALKNVEAIFGIH-----LSPRTPF 202
Query: 181 GRRGSLSG---------EITIHGKQGHVAYPHLTENPI---RGLIPLLHQLTNIGFDTGN 228
G+ S +G E I GK GH A P T +P+ ++ L QL + D +
Sbjct: 203 GKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLD 262
Query: 229 TTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIR 262
+ + ++ ++ GN + NVIP + + +R
Sbjct: 263 SKV----VTVSKVNGGN-AFNVIPDSITIGGTLR 291
>gnl|CDD|150098 pfam09319, DUF1976, Domain of unknown function (DUF1976). Members of
this family are found in a set of hypothetical
Mycoplasmal proteins. Their exact function has not, as
yet, been defined.
Length = 1114
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 252 PAQVKMSFNIRFNDLWNEKTLKE 274
Q +SF I F D+ N+K+LKE
Sbjct: 1086 LTQKTVSFKINFEDVTNKKSLKE 1108
>gnl|CDD|181761 PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.
Length = 413
Score = 28.6 bits (65), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 55 NLYARF-GTE--APHLMFAGHIDVVPPG 79
NL+ R G + AP ++ H+D VP G
Sbjct: 61 NLFGRLEGRDPDAPAVLTGSHLDTVPNG 88
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 28.1 bits (63), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 240 TIDVGNPSKNVIPAQVKMSFNIR 262
+D G+PS +IP +V+ SF+ R
Sbjct: 270 ALDPGSPS--IIPGRVEFSFDAR 290
>gnl|CDD|181769 PRK09300, PRK09300, tRNA splicing endonuclease; Reviewed.
Length = 330
Score = 27.2 bits (61), Expect = 6.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 63 EAPHLMFAGHIDVVPPGDF 81
EA +L+F G I++V F
Sbjct: 40 EAAYLLFRGKIEIVDGLGF 58
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,473,218
Number of extensions: 417122
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 61
Length of query: 389
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 294
Effective length of database: 3,941,713
Effective search space: 1158863622
Effective search space used: 1158863622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)