RPSBLAST alignment of GI: 254780782 and protein with PDBid: 1ysj

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Length = 404

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 51/325 (15%), Positives = 104/325 (32%), Gaps = 16/325 (4%)

Query: 28  ILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYP 87
            +   L+     I +       T ++  +  +   + P +     ID +P  +  +  + 
Sbjct: 57  KIRRWLEEEQIEILDVPQLK--TGVIAEI--KGREDGPVIAIRADIDALPIQEQTNLPF- 111

Query: 88  PFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGTK 147
              A+  +G ++  G      SI      + +   + +  G++  +    EE       K
Sbjct: 112 ---ASKVDGTMHACGHDFHTASIIGTAMLLNQR--RAELKGTVRFIFQPAEEIA-AGARK 165

Query: 148 KMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTEN 207
            + + +                    IG             EI I GK GH + P+ + +
Sbjct: 166 VLEAGVLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSID 225

Query: 208 PIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLW 267
           PI     ++  L +    + N +     +   T      S NVIP Q +M   +R     
Sbjct: 226 PIAAAGQIISGLQS--VVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEMEGTVRTFQKE 283

Query: 268 NEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIP 327
             + + E +R R+ +GI           +   +  V   +D    +  S++         
Sbjct: 284 ARQAVPEHMR-RVAEGIAAGYGAQAEFKWFPYLPSVQ--NDGTFLNAASEAAARLGYQTV 340

Query: 328 LLSTSGGTSDARFIKDYCPVIEFGL 352
               S G  D    ++  P     +
Sbjct: 341 HAEQSPGGEDFALYQEKIPGFFVWM 365