RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate
desuccinylase [Candidatus Liberibacter asiaticus str. psy62]
(389 letters)
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis MC58} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 274 bits (701), Expect = 3e-74
Identities = 165/381 (43%), Positives = 220/381 (57%), Gaps = 13/381 (3%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
LE +LI PSVTP D ++ L +GF+ EE F KN++ R GT+AP
Sbjct: 9 LELAKELISRPSVTPDDRDCQKLMAERLHKIGFAAEEMHFGN-----TKNIWLRRGTKAP 63
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
+ FAGH DVVP G W PPF +G++YGRG DMK SIACF+ A RF+ K+
Sbjct: 64 VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHP 123
Query: 126 NFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
N SI+LLIT DEEG A++GT K++ ++ + E D CIVGEPT +GD IK GRRG
Sbjct: 124 NHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRG 183
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
SLSG +T+ GKQGH+AYPHL NP+ P L +LT +D GN F PT+ +I+ I+ G
Sbjct: 184 SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ NVIP ++ + FN RF+ E LK+ + + L K + + + +S P F
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK-----HGVQYDLQWSCSGQP-F 297
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYC-PVIEFGLVGRTMHALNEN 363
LT KLT + +I T G LST+GGTSD RFIK +IE G T+H +NEN
Sbjct: 298 LTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQELIELGPSNATIHQINEN 357
Query: 364 ASLQDLEDLTCIYENFLQNWF 384
L D+ L+ +YE L
Sbjct: 358 VRLNDIPKLSAVYEGILVRLL 378
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 241 bits (615), Expect = 2e-64
Identities = 76/412 (18%), Positives = 135/412 (32%), Gaps = 41/412 (9%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVK-------- 54
D + L ++++ SV ++ L G+ ++ + +
Sbjct: 26 NDQVAFLQRMVQFRSVRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDTI 85
Query: 55 ------NLYARFGT--EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDM 106
+ A + + L+ GHIDVVP G + W+ PP+ A + +G + GRG DM
Sbjct: 86 DPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWMIGRGAQDM 145
Query: 107 KGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVG 166
KG ++ I A+ + + T EE NG L +G + DAC++
Sbjct: 146 KGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGNGALSTL----MRGYRADACLIP 201
Query: 167 EPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDT 226
EPT + + + G++ + + G HVAY + I + L+ +
Sbjct: 202 EPTGHTLT-----RAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYTKEL 256
Query: 227 GNTTFS---------PTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIR 277
P + I G + A ++ + + I
Sbjct: 257 NAQAVRDPWFGQVKNPIKFNVGIIK-GGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIE 315
Query: 278 SRLIKGIQNVPKLSHT----VHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSG 333
L LS V P +L+ + S
Sbjct: 316 KCLADAQATDSFLSENPAELVWSGFQADPAVCEPGGVAEDVLTAAHKAAFNAPLDARLST 375
Query: 334 GTSDARFIKDY--CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNW 383
+D R+ P + +G G+ HA +E L+ L T F+ W
Sbjct: 376 AVNDTRYYSVDYGIPALCYGPYGQGPHAFDERIDLESLRKTTLSIALFVAEW 427
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2; 2.00A
{Haemophilus influenzae rd KW20} PDB: 3ic1_A
Length = 377
Score = 231 bits (589), Expect = 2e-61
Identities = 155/386 (40%), Positives = 213/386 (55%), Gaps = 13/386 (3%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
M + LI+ PS++P D G I+ L+ LGF IE F NL+A+
Sbjct: 1 MKEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND-----TLNLWAKH 55
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
GT P + FAGH DVVP GD N W+ PPFSA I +G +YGRG DMKGS+A I A +
Sbjct: 56 GTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEY 115
Query: 121 IPKYKNFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
+ N +I+LLIT DEE A +GT ++ + + EK C+VGEP+ +GD +K
Sbjct: 116 VKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVK 175
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
GRRGS++G + I G QGHVAYPHL ENPI L +LT +D GN F PT+++I
Sbjct: 176 NGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPTSLQIA 235
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
I G S NVIPA++ + FN+R+ ++ +K+++ L K L + + ++
Sbjct: 236 NIHAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK-----HNLKYRIEWNLS 290
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMH 358
P FLT KL ++ +I T G P T GGTSD RFI V+EFG + T+H
Sbjct: 291 GKP-FLTKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNSTIH 349
Query: 359 ALNENASLQDLEDLTCIYENFLQNWF 384
+NE S++DL IY L N
Sbjct: 350 KVNECVSVEDLGKCGEIYHKMLVNLL 375
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase,
metal-bindin metalloprotease, protease; 2.30A
{Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Length = 492
Score = 203 bits (518), Expect = 4e-53
Identities = 72/475 (15%), Positives = 129/475 (27%), Gaps = 114/475 (24%)
Query: 3 PDCLEHLIQLIKCPSV----TPQDGGAFFI--------LVNTLKLLGFSIEEKDFQTKNT 50
+ L L+ SV + + GF+ + D
Sbjct: 34 DQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD------ 87
Query: 51 SIVKNL--YARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKG 108
++ G L H+DVVP GD W PF + E I RG +D KG
Sbjct: 88 ----HIAGRIEAGKGNDVLGILCHVDVVPAGD--GWDSNPFEPVVTEDAIIARGTLDDKG 141
Query: 109 SIACFIAAVARFIPKYKNF-----------------GSISLL---------ITGDEEGPA 142
A+ ++ + D E P
Sbjct: 142 PTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPC 201
Query: 143 INGTKKMLSWIEKKG--------------------------EKWDACIVGEPTCNHIIGD 176
I+G K + ++ + + +A ++ + +I D
Sbjct: 202 IHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQD 261
Query: 177 TIKIGRRGSLSG---------EITIHGKQGHVAYPHLTENPIRGLIPLLHQL-------- 219
+ L G +T+ GK H P + N L+ L L
Sbjct: 262 FEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQA 321
Query: 220 ----------TNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNE 269
+ + F M T ++G + N+R+ + +
Sbjct: 322 FVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVIT-YDNENAGLFGINLRYPEGFEF 380
Query: 270 KTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLL 329
+ + + + V P ++ + L + N T ++
Sbjct: 381 EKAMDRFA-------NEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEP 433
Query: 330 STSGGTSDARFIKD-YCPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNW 383
T GG + AR + F MH NE + + L + T IY + +
Sbjct: 434 YTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSL 488
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 165 bits (417), Expect = 2e-41
Identities = 61/450 (13%), Positives = 122/450 (27%), Gaps = 72/450 (16%)
Query: 4 DCLEHLIQLIKCPSVTPQDGGAFFI---LVNTLKLLGFSIEEKDFQTKNTSIVK------ 54
+ L L IK P+ +P + + + + + + IV+
Sbjct: 19 EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTP 78
Query: 55 NLYARF-GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACF 113
L+ G ++ GH+D P P+ + G +YGRG D S
Sbjct: 79 LLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYAS 138
Query: 114 IAAVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHI 173
+ A+ + + L+I EE + ++++ K I + +
Sbjct: 139 LTAIRALEQQGLPYPRCILIIEACEESG-SYDLPFYIELLKERIGKPSLVICLDSGAGNY 197
Query: 174 IGDTIKIGRRGSLSGEITIHGKQGHVAYPH---LTENPIRGLIPLLHQLTNI-------- 222
+ RG+L G++T+ V + + R L+ ++ +
Sbjct: 198 EQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLP 257
Query: 223 ------------------------------------------GFDTGNTTFSPTNME--I 238
N T+ P
Sbjct: 258 QLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGA 317
Query: 239 TTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSS 298
+ NV+ + ++R L + + + L + K+ +
Sbjct: 318 DGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGG 377
Query: 299 PVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGT-SDARFIKDYCPVIEFGLVG--- 354
L S++ GGT + + P +F + G
Sbjct: 378 SKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLG 437
Query: 355 --RTMHALNENASLQDLEDLTCIYENFLQN 382
H NE L ++ LT L +
Sbjct: 438 PHSNAHGPNEFLHLDMVKKLTSCVSYVLYS 467
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, cytoplasm,
hydrolase, metal-binding, metalloprotease, protease,
zinc, structural genomics; HET: SUC; 1.55A {Bacillus
anthracis}
Length = 434
Score = 162 bits (409), Expect = 2e-40
Identities = 55/429 (12%), Positives = 115/429 (26%), Gaps = 67/429 (15%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFF----------ILVNTLKLLGFSIEEKDFQTKNT 50
M + +E + +K + + +D +LV LK +G + D N
Sbjct: 25 MKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMD---DNG 81
Query: 51 SIVKNLYARFGTEAPHLMFAGHIDVVPPGD--------------------------FNHW 84
++ L A + P + F H+D
Sbjct: 82 YVMATLPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPE 141
Query: 85 TYPPFSATIAEGKIYGRGI----VDMKGSIACFIAAVARFIPKYKNF-GSISLLITGDEE 139
+P + I G D K + + A+ I + G I + T DEE
Sbjct: 142 QFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEE 201
Query: 140 GPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHV 199
G +E G + + G P + ++T +G H
Sbjct: 202 IGR--GPAHFD--VEAFGASFAYMMDGGPLGGLEYE------SFNAAGAKLTFNGTNTHP 251
Query: 200 AY-PHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN--MEITTIDVGNPSKNVIPAQVK 256
+ N + + L + + + + + +I +
Sbjct: 252 GTAKNKMRNATKLAMEFNGHLPVEEAPEYTEGYEGFYHLLSLNGDVEQSKAYYIIRDFDR 311
Query: 257 MSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLS 316
+F R N + E + ++ + ++ + R++ +
Sbjct: 312 KNFEARKNTI--------ENIVKQMQEKYGQDAVVLEMNDQYYNMLEKIEPVREIVDIA- 362
Query: 317 KSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALNENASLQDLEDLTCI 375
+ P + G +D + P G H E S+ +E +
Sbjct: 363 YEAMKSLNIEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGENYHGKFEYVSVDVMEKAVQV 422
Query: 376 YENFLQNWF 384
+ +
Sbjct: 423 IIEIARRFE 431
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 155 bits (391), Expect = 2e-38
Identities = 80/471 (16%), Positives = 124/471 (26%), Gaps = 112/471 (23%)
Query: 4 DCLEHLIQLIKCPSVTPQDGG------------AFFILVNTLKLLGFSIEEKDFQTKNTS 51
L+ L +LI S + A ++ K GF E
Sbjct: 15 AILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFA------- 67
Query: 52 IVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE-GKIYGRGIVDMKGSI 110
FG L GH+DVVP G+ WT PF I E G+IYGRG D KG
Sbjct: 68 -NYAGRVNFGAGDKRLGIIGHMDVVPAGE--GWTRDPFKMEIDEEGRIYGRGSADDKGPS 124
Query: 111 ACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLS-----------------WI 153
+ + G E G L
Sbjct: 125 LTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDIVFSPDAEYPIIN 184
Query: 154 EKKGEKW-DACIVGEPTCNHIIGDTIKIGRRGSL-------------------------- 186
++G + + T + D K G ++
Sbjct: 185 GEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLA 244
Query: 187 -------------SGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSP 233
S +I + G+ H + P + +N L L Q G D F
Sbjct: 245 DKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLA 304
Query: 234 TNMEITTI-----------------DVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEI 276
+ + + N+R+ + T+ +++
Sbjct: 305 EVEHEDFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQV 364
Query: 277 RSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTS 336
+ + V ++ P ++ + L K TG GG +
Sbjct: 365 LDKFSGIL--------DVTYNGFEEPHYVPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGT 416
Query: 337 DARFIKDYCPVIEFGLVGR----TMHALNENASLQDLEDLTCIYENFLQNW 383
R + + FG MHA NE L DL IY +
Sbjct: 417 YGRLFER---GVAFGAQPENGPMVMHAANEFMMLDDLILSIAIYAEAIYEL 464
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural genomics, PSI-2; HET: BGC;
1.90A {Streptococcus pneumoniae TIGR4}
Length = 481
Score = 150 bits (378), Expect = 5e-37
Identities = 84/443 (18%), Positives = 145/443 (32%), Gaps = 74/443 (16%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFI---LVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT 62
E L LI SV Q G + L K +G +E + + + A F +
Sbjct: 47 FEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDE-----SYTAPFVMAHFKS 101
Query: 63 E---APHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR 119
A L+F H D VP WT PF+ ++ G +YGRG+ D KG I ++A+ +
Sbjct: 102 SRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRK 161
Query: 120 FIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
++ + + I E A K L K D + + T N + I
Sbjct: 162 YMQHHDDLPVNISFIMEGAEESASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEIS 221
Query: 180 IGRRGSLSGEITIHG--KQGHVAYPHLTENPIRGLIPLLHQLTNI--------------- 222
G +G ++ + + H +Y + E+ L+ L L
Sbjct: 222 GGNKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQE 281
Query: 223 ----------------------------------GFDTGNTTFSPTNMEITTID---VGN 245
F + I I G
Sbjct: 282 PNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQ 341
Query: 246 PSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFL 305
K ++PA+ +R + E+IR +L K + +L +T+ S S +
Sbjct: 342 GVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTLGEMSYRSDM-- 399
Query: 306 THDRKLTSLLSKSIYNTTGN-IPLLSTSGGTSDARFIKDY--CPVIEFGL--VGRTMHAL 360
+ + + +L T+ GT + D P++ FGL H
Sbjct: 400 --SAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFDALEVPMVAFGLGNANSRDHGG 457
Query: 361 NENASLQDLEDLTCIYENFLQNW 383
+EN + D + E ++++
Sbjct: 458 DENVRIADYYTHIELVEELIRSY 480
>1fno_A Peptidase T; metallo peptidase, protease, zinc, hydrolase; 2.40A
{Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
1vix_A
Length = 417
Score = 149 bits (377), Expect = 1e-36
Identities = 53/421 (12%), Positives = 107/421 (25%), Gaps = 64/421 (15%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFF----------ILVNTLKLLGFSIEEKDFQTKNTSIVKN 55
LE + + + + +L L+ +G + +++
Sbjct: 5 LERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLS---EKGTLMAT 61
Query: 56 LYARFGTEAPHLMFAGHIDVVPPGD-------------------------FNHWTYPPFS 90
L A + P + F H+D P + +P
Sbjct: 62 LPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLH 121
Query: 91 ATIAEGKIYGRGIV----DMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGT 146
+ + I G D K +A + A+A G I + T DEE G
Sbjct: 122 QLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPIPHGDIKVAFTPDEEVGK--GA 179
Query: 147 KKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTE 206
K + ++ + S I I G H
Sbjct: 180 KHFDVE----AFGAQWAYT----VDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVM 231
Query: 207 NPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDL 266
L +H T + ++ + +M + IR D
Sbjct: 232 VNALSLAARIHAEVPADEAPETTEGYEGFYHLASM-------KGTVDRAEMHYIIRDFDR 284
Query: 267 WNEKTLKEEIR---SRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTT 323
+ K ++ ++ KG+ + + S + + + +
Sbjct: 285 KQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIA-QQAMRDC 343
Query: 324 GNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
P + G +D + P G H +E +L+ +E + +
Sbjct: 344 HITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAEL 403
Query: 383 W 383
Sbjct: 404 T 404
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structural genomics consortium,
SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 144 bits (364), Expect = 2e-35
Identities = 77/456 (16%), Positives = 150/456 (32%), Gaps = 76/456 (16%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGGAFF--------ILVNTLKLLGFSIEEKDFQTK------ 48
+ ++ L + + S + Q F + +TL+ LG + D +
Sbjct: 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQ 84
Query: 49 NTSIVKNLYARFGT--EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDM 106
+ I + A G+ + F GH+DV P + W P+ T +GK+YGRG D
Sbjct: 85 SLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDN 144
Query: 107 KGSIACFIAAVARFIPKYKNFGSIS-LLITGDEEGPAINGTKKMLSWIEKKGEKWDACIV 165
KG + +I AV+ F ++ +I G EE ++ + + ++ D ++
Sbjct: 145 KGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVI 204
Query: 166 GEPTCNHIIGDTIKIGRRGSLSGEI------------------------------TIHGK 195
+ I G RG+ + ++
Sbjct: 205 SDNLWISQRKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDS 264
Query: 196 QGHVAYPHLTENPIRGLIPLLHQLTNIGFD--------------------TGNTTFSPTN 235
GH+ P + + + ++ I D + +
Sbjct: 265 SGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPS 324
Query: 236 MEITTID---VGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLS- 291
+ I I+ +K VIP +V F+IR N +++++ L +
Sbjct: 325 LSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNK 384
Query: 292 HTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSD-ARFIKDYCP---- 346
V + + P D ++I G P + G T A+ ++
Sbjct: 385 MVVSMTLGLHPWIANIDDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVV 444
Query: 347 VIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
+I G V H+ NE + + + T ++ F
Sbjct: 445 LIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLE 480
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP dipeptidase 2,
bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A
{Mus musculus} PDB: 2zof_A*
Length = 479
Score = 141 bits (356), Expect = 2e-34
Identities = 71/451 (15%), Positives = 139/451 (30%), Gaps = 74/451 (16%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFI------LVNTLKLLGFSIEEKDFQTKNTSIVK----- 54
++ L + + SV+ I ++ LG S+E D +
Sbjct: 23 VKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLP 82
Query: 55 -NLYARFGT--EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIA 111
L + G+ + + GH+DV P + W PF+ EGK+YGRG D KG +A
Sbjct: 83 PILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVA 142
Query: 112 CFIAAVARFIPKYKNF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTC 170
++ A+ + + ++ + G EE + + + + +K + D + +
Sbjct: 143 GWMNALEAYQKTGQEIPVNLRFCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYW 202
Query: 171 NHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTT 230
I G RG I + + + + L+ + + G
Sbjct: 203 LGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKIL 262
Query: 231 FSPTNMEITTI------------------------------------------------- 241
N + +
Sbjct: 263 IPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHG 322
Query: 242 ----DVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRL-IKGIQNVPKLSHTVHF 296
G+ +K VIP +V F+IR + + E++ S L K + V+
Sbjct: 323 IEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYM 382
Query: 297 SSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGT--SDARFIKDYCP---VIEFG 351
P + +++ G P L+ GG+ F + ++ G
Sbjct: 383 GHGGKPWVSDFNHPHYQAGRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVG 442
Query: 352 LVGRTMHALNENASLQDLEDLTCIYENFLQN 382
H+ NE + + + T + +L
Sbjct: 443 SADDGAHSQNEKLNRLNYIEGTKMLAAYLYE 473
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
M20/M25/M40, structural genomics; 2.04A {Bacillus cereus
atcc 10987}
Length = 373
Score = 123 bits (309), Expect = 5e-29
Identities = 61/381 (16%), Positives = 110/381 (28%), Gaps = 23/381 (6%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF---GT 62
+ ++L++ S T + +L LG + E D NL
Sbjct: 9 VNEFMELVQVDSETKFEAEICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKD 68
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIP 122
+ F H+D V PG N I G D K +A A+
Sbjct: 69 GVDTIYFTSHMDTVVPG--NGIKPSIKDGYIVSDGTTILGA-DDKAGLASMFEAIRVLKE 125
Query: 123 KYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGR 182
K G+I +IT EE + A + +G+ +
Sbjct: 126 KNIPHGTIEFIITVGEESGLVGAKALDRER-------ITAKYGYALDSDGKVGEIVVAAP 178
Query: 183 RGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTID 242
+ I P + I + ++ D+ T
Sbjct: 179 TQAKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLGRIDSETTAN-------IGRF 231
Query: 243 VGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSP 302
G N++ V++ R + +++ + + H + + P
Sbjct: 232 EGGTQTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGG--HADVEVNVMYP 289
Query: 303 VFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALN 361
F D ++K G P L SGG SDA I + P + + +H N
Sbjct: 290 GFKFADGDHVVEVAKRAAEKIGRTPSLHQSGGGSDANVIAGHGIPTVNLAVGYEEIHTTN 349
Query: 362 ENASLQDLEDLTCIYENFLQN 382
E +++L + ++
Sbjct: 350 EKIPVEELAKTAELVVAIIEE 370
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Length = 346
Score = 122 bits (307), Expect = 1e-28
Identities = 29/386 (7%), Positives = 84/386 (21%), Gaps = 59/386 (15%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
+ + + L++L + + + + ++ + +L
Sbjct: 3 LKMETGKLLMELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRH--------GSLIGYK 54
Query: 61 -GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR 119
G L F H+D + + + + +
Sbjct: 55 KGKGIGKLAFFAHVD----------EIGFVVSKVEGQFARLEPVGGVDPKVVY------- 97
Query: 120 FIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
S + T + + G ++ + E + + +
Sbjct: 98 --------ASKVRIYTKNGIERGVIGMLA--PHLQDSESRKKVPTYDEIFVDLSLCERGV 147
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
++ + V L+ +L L E
Sbjct: 148 RVGDIAVIDQTAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETG 207
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
+ + + P + ++ ++ + G L + +
Sbjct: 208 CLGALTGAYEINPDAAIVMDVTFASEPPFSDHIELGKGPVIGLGPVVDRNLVQKIIEIAK 267
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY---CPVIEFGLVGRT 356
V L + ++ F++ + +
Sbjct: 268 KHNVSLQEE--------------------AVGGRSGTETDFVQLVRNGVRTSLISIPLKY 307
Query: 357 MHALNENASLQDLEDLTCIYENFLQN 382
MH E +D+E+L +
Sbjct: 308 MHTPVEMVDPRDVEELARLLSLVAVE 333
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 198
Score = 122 bits (307), Expect = 1e-28
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 13/192 (6%)
Query: 6 LEHLIQLIKCPSVTPQD--GGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTE 63
+ Q ++ +V P+ G A T + LG ++ + V +
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTV-LTWPGTNPT 71
Query: 64 APHLMFAGHIDVVPPGDFNHWTYPPFSAT-IAEGKIYGRGIVDMKGSIACFIAAVARFIP 122
++ H DVVP HW++ PF A +EG IY RG DMK ++ AV R
Sbjct: 72 LSSILLNSHTDVVPV-FKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKV 130
Query: 123 -KYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACI---VGEPTCNHIIGDTI 178
++ +I + DEE G + + E + + + PT T+
Sbjct: 131 EGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTD----AFTV 186
Query: 179 KIGRRGSLSGEI 190
R +
Sbjct: 187 FYSERSPWWVRV 198
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown
function; HET: MSE; 1.90A {Bacillus subtilis} SCOP:
b.49.3.1 c.56.5.4
Length = 373
Score = 118 bits (296), Expect = 2e-27
Identities = 39/384 (10%), Positives = 91/384 (23%), Gaps = 45/384 (11%)
Query: 4 DCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF--G 61
+ L L L + + ++ + ++ + +L A+
Sbjct: 8 ETLTMLKDLTDAKGIPGNEREVRQVMKSYIEPFADEVTTDRL--------GSLIAKKTGA 59
Query: 62 TEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFI 121
P +M AGH+D V + +G I + + + V
Sbjct: 60 ENGPKIMIAGHLDEVGF---------MVTQITDKGFIRFQTVGGWWAQVMLA-QRVTIVT 109
Query: 122 PKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIG 181
K + G I A + ++ + I + +
Sbjct: 110 KKGEITGVIGSKPPHILSPEARKKSVEI--------KDMFIDIGASSREEALEWGVLPGD 161
Query: 182 RRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTI 241
++ ++ +A I +L L N E+
Sbjct: 162 MIVPHFEFTVMNNEKFLLAKAWDNRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLR 221
Query: 242 DVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVS 301
+ + P D + + V
Sbjct: 222 GAKTAAHTIQPDIAFGVDVGIAGDTPGIS--------------EKEAQSKMGKGPQIIVY 267
Query: 302 PVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI---KDYCPVIEFGLVGRTMH 358
+ + L + + + +GG +D+ I + P + + R +H
Sbjct: 268 DASMVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDSGAIHLTANGVPALSITIATRYIH 327
Query: 359 ALNENASLQDLEDLTCIYENFLQN 382
D E+ + ++
Sbjct: 328 THAAMLHRDDYENAVKLITEVIKK 351
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer,
hydrolase; 3.00A {Vibrio alginolyticus}
Length = 490
Score = 118 bits (297), Expect = 2e-27
Identities = 38/292 (13%), Positives = 83/292 (28%), Gaps = 34/292 (11%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT--- 62
+ ++ P + + +V GF + N++ +
Sbjct: 17 WQFFDKICSIPHPSKHEEALAQYIVTWATEQGFDVRRDP--------TGNVFIKKPATPG 68
Query: 63 --EAPHLMFAGHIDVVPPGD---FNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV 117
++ HID+VP + + +T P I + +G + + +
Sbjct: 69 MENKKGVVLQAHIDMVPQKNEDTDHDFTQDPIQPYIDGEWVTAKGTTLGADNGIGMASCL 128
Query: 118 ARFIPKYKNFGSISLLITGDEEG---------PAINGTKKMLSWIEKKGEKWDACIVGEP 168
A K G I +L+T DEE +L+ ++ + G
Sbjct: 129 AVLASKEIKHGPIEVLLTIDEEAGMTGAFGLEAGWLKGDILLNTDSEQEGEVYMGCAGGI 188
Query: 169 TCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGN 228
T G ++ ++T+ G +G H + G +
Sbjct: 189 DGAMTFDITRDAIPAGFITRQLTLKGLKGG----HSGCDIHTGRGNANKLIGRFLAG--- 241
Query: 229 TTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRL 280
++ + G+ N IP + ++ + + L L
Sbjct: 242 -HAQELDLRLVEFRGGSLR-NAIPREAFVTVALPAENQDKLAELFNYYTELL 291
Score = 72.1 bits (176), Expect = 2e-13
Identities = 22/197 (11%), Positives = 52/197 (26%), Gaps = 15/197 (7%)
Query: 189 EITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSK 248
+I ++ + I L+ G S + +
Sbjct: 301 DIVTFNEEVATDAQVFAIADQQRFIAALN-----ACPNGVMRMSDEVEGVVETSLNVGVI 355
Query: 249 NVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHD 308
+V + IR ++ ++S + FS D
Sbjct: 356 TTEENKVTVLCLIRSLIDSGRSQVEGMLQSVA-------ELAGAQIEFSGAYPGWKPDAD 408
Query: 309 RKLTSLLSKSIYNTTGNIPLLSTS-GGTSDARFIKDY--CPVIEFGLVGRTMHALNENAS 365
++ ++ G+ P + G F + Y ++ FG + H+ +E
Sbjct: 409 SEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDMVSFGPTIKFPHSPDEKVK 468
Query: 366 LQDLEDLTCIYENFLQN 382
+ ++ L+
Sbjct: 469 IDTVQLFWDQMVALLEA 485
>1z2l_A Allantoate amidohydrolase; ALLC, purine catabolism, allantoin
utilization, structural genomics, PSI, protein structure
initiative; HET: 1AL; 2.25A {Escherichia coli K12} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 117 bits (293), Expect = 4e-27
Identities = 49/389 (12%), Positives = 113/389 (29%), Gaps = 34/389 (8%)
Query: 16 PSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF---GTEAPHLMFAGH 72
+P+ + G + V NLY R ++ H
Sbjct: 32 LLYSPEWLETQQQFKKRMAASGLETRFDE--------VGNLYGRLNGTEYPQEVVLSGSH 83
Query: 73 IDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV--ARFIPKYKNFGSI 130
ID V G + +A +A + + ++ +A +RF + +I
Sbjct: 84 IDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNI 143
Query: 131 SLLIT-------GDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRR 183
L D +G + K + + HI +
Sbjct: 144 FGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNG 203
Query: 184 GSLSGEITIHGKQGHVAYPHLTEN--------PIRGLIPLLHQLTNIGFDTGNTTFSPTN 235
S+ I G++ + + N R + ++ + + P
Sbjct: 204 QSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLV 263
Query: 236 MEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVH 295
+ ++ + NV+P + + + R D + +++ + ++ +
Sbjct: 264 LTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLEND---MRAICDEMDIGID 320
Query: 296 FSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCP-VIEFG-LV 353
+ + +++L + L++ N ++ SG DA+ P + F +
Sbjct: 321 IDLWMDEEPVPMNKELVATLTELCEREKLNYRVM-HSGAGHDAQIFAPRVPTCMIFIPSI 379
Query: 354 GRTMHALNENASLQDLEDLTCIYENFLQN 382
H E ++ DL + L
Sbjct: 380 NGISHNPAERTNITDLAEGVKTLALMLYQ 408
>2cf4_A Protein PH0519, phtet1-12S; aminopeptidase, metalloprotein,
hyperthermophIle, archaea, tetrahedral, hydrolase; 3.08A
{Pyrococcus horikoshii}
Length = 332
Score = 117 bits (293), Expect = 4e-27
Identities = 47/377 (12%), Positives = 96/377 (25%), Gaps = 50/377 (13%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
+E L + + P ++ + ++ +K + + NL G
Sbjct: 5 IEKLKKFTQIPGISGYEERIREEIIREIKDFADYKVDA---------IGNLIVELGEGEE 55
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
++F H+D + + G +D + + V K
Sbjct: 56 RILFMAHMDEIGLLITGITDEGKL-------RFRKVGGIDDRLLYGRHVNVVTE---KGI 105
Query: 126 NFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGS 185
G I + +D I + +K
Sbjct: 106 LDGVIGATPPHLSLERDKSVIPW-----------YDLVIDIGAESKEEALELVKPLDFAV 154
Query: 186 LSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGN 245
++ + + LI + L + + G F+ T E +
Sbjct: 155 FKKHFSVLNGKYVSTRGLDDRFGVVALIEAIKDLVDHELE-GKVIFAFTVQEEVGLKGAK 213
Query: 246 PSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFL 305
N Q + + +K V + S ++
Sbjct: 214 FLANHYYPQYAFAIDSFACCSPLTGDVKLGK---------------GPVIRAVDNSAIYS 258
Query: 306 THDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHALNENAS 365
+ SI G + +GG +DA +D + + + +H+ E
Sbjct: 259 RDLARKV----WSIAEKNGIEIQIGVTGGGTDASAFQDRSKTLALSVPIKYLHSEVETLH 314
Query: 366 LQDLEDLTCIYENFLQN 382
L DLE L + E
Sbjct: 315 LNDLEKLVKLIEALAFE 331
>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP:
b.49.3.1 c.56.5.4
Length = 349
Score = 116 bits (290), Expect = 9e-27
Identities = 43/388 (11%), Positives = 92/388 (23%), Gaps = 49/388 (12%)
Query: 2 TPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF- 60
T + +E + +L+ PS + + N + + + L
Sbjct: 5 TKETMELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRNNKG--------ALILTVK 56
Query: 61 -GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR 119
+A H + H+D + G +
Sbjct: 57 GKNDAQHRLLTAHVDT-------LGAMVKEIKPDGRLSLSMIGGFRWNSVEGEYCEIETS 109
Query: 120 FIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
Y G+I + T K+ IE + ++ E I
Sbjct: 110 SGKTYT--GTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERV-FSADEVRELGIEVGD-- 164
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
S + I + + + L+ L+ +L + TT +
Sbjct: 165 ---FVSFDPRVQITESGYIKSRHLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEE 221
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
+G + IP + + L + + E S K + H
Sbjct: 222 ---IGYGGNSNIPEETVEYLAVDMGALGDGQASDEYTVSICAKDSSGPYHYALRKHLVEL 278
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY--CPVIEFGLVGRTM 357
+ + + G+ + I+ G +
Sbjct: 279 AKTNHIEYKVD------------------IYPYYGSDASAAIRAGFDVKHALIGAGIDSS 320
Query: 358 HALNENASLQDLEDLTCIYENFLQNWFI 385
HA E + + ++ + I
Sbjct: 321 HA-FERTHESSIAHTEALVYAYVMSNLI 347
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function,
protease, thermophilic, SELF-compartmentalising,
hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A
Length = 354
Score = 116 bits (290), Expect = 9e-27
Identities = 53/381 (13%), Positives = 116/381 (30%), Gaps = 50/381 (13%)
Query: 6 LEHLIQLIKCPSVTPQ-DGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEA 64
+ + ++I+ P V+ G I+V+ LK + ++ N+ A F +
Sbjct: 12 WKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKL--------GNVIAHFKGSS 63
Query: 65 PHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKY 124
P +M A H+D + + +G ++ I + K
Sbjct: 64 PRIMVAAHMDKIGVMVNHID---------KDGYLHIVPIGGVLPETLVAQRIRFFTE-KG 113
Query: 125 KNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
+ +G + +L G G+K I VG + ++G G
Sbjct: 114 ERYGVVGVLPPHLRRGQEDKGSKIDWDQI--------VVDVGASSKEEAEEMGFRVGTVG 165
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
+ T + + L ++ +G + + E +
Sbjct: 166 EFAPNFTRLNEHRFATPYL---DDRICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGA 222
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ I +V ++ ++ F ++K +I L KG + + V
Sbjct: 223 RVASYAINPEVGIAMDVTFAKQPHDK---GKIVPELGKGPVMDVGPNINPKLRAFADEVA 279
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY---CPVIEFGLVGRTMHALN 361
++ L S +DA ++ + R MH+
Sbjct: 280 KKYEIPLQ--------------VEPSPRPTGTDANVMQINKEGVATAVLSIPIRYMHSQV 325
Query: 362 ENASLQDLEDLTCIYENFLQN 382
E A +D+++ + + L+
Sbjct: 326 ELADARDVDNTIKLAKALLEE 346
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 115 bits (288), Expect = 2e-26
Identities = 74/388 (19%), Positives = 127/388 (32%), Gaps = 26/388 (6%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGG---AFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYAR 59
P ++ L +L+ + T G A L LK LGF++ + + N+ +
Sbjct: 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSK--SAGLVVGDNIVGK 76
Query: 60 F-GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVA 118
G +L+ H+D V PF K YG GI D KG A + +
Sbjct: 77 IKGRGGKNLLLMSHMDTVYLKG--ILAKAPFRVEG--DKAYGPGIADDKGGNAVILHTLK 132
Query: 119 RFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTI 178
IT G+ I+++ + D + EPT ++
Sbjct: 133 LLKEYGVRDYGT---ITVLFNTDEEKGSFGSRDLIQEEAKLADYVLSFEPTSAGDEKLSL 189
Query: 179 KIGRRGSLSGEITIHGKQGHV-AYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNME 237
G ++ I GK H A P L N + L+ + N +
Sbjct: 190 G--TSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN------IDDKAKNLRF 241
Query: 238 ITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFS 297
TI N+IPA ++ ++R+ + + + R + + V
Sbjct: 242 NWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTRG 301
Query: 298 SPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI-KDYCPVIE-FGLVGR 355
P +KL G + + +GG +DA + PVIE GL G
Sbjct: 302 RPA-FNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIESLGLPGF 360
Query: 356 TMHALN-ENASLQDLEDLTCIYENFLQN 382
H+ E + + + + +
Sbjct: 361 GYHSDKAEYVDISAIPRRLYMAARLIMD 388
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic
metallopeptidase, peptidase family M20/M25/M40,
structural genomics; HET: MSE PGE PG4; 1.60A
{Desulfovibrio desulfuricans subsp}
Length = 364
Score = 109 bits (273), Expect = 9e-25
Identities = 69/385 (17%), Positives = 124/385 (32%), Gaps = 38/385 (9%)
Query: 3 PDCLEHLIQLIKCPSVTPQDGG---AFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYAR 59
+E LI+ PS+ + +++ G E D + ++
Sbjct: 6 QHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMDHDG-----IPSVMVL 60
Query: 60 FGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR 119
L+ HIDVV D G + V + + +
Sbjct: 61 PEKGRAGLLLMAHIDVVDAEDDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALK 120
Query: 120 FIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
+ + ++ LLITGDEE +NG K L I + +
Sbjct: 121 AAGRSQKDMALGLLITGDEEIGGMNGAAKALPLIRADYVVA---------LDGGNPQQVI 171
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
+G + ++T GK H A P + N + L+ +L + + + T
Sbjct: 172 TKEKGIIDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFAEENEDHWHRTVNLGR 231
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
S N +P + FNIR + + + ++ K + + TV
Sbjct: 232 IRA--GESTNKVPDVAEGWFNIRVTEHDD----PGALIDKIRKTVSGTVSIVRTVPV--- 282
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVG-RTM 357
FL D T L T G + G SDAR++ + + +G G T+
Sbjct: 283 ----FLAADSPYTERLLALSGATAG------KAHGASDARYLGENGLTGVVWGAEGFNTL 332
Query: 358 HALNENASLQDLEDLTCIYENFLQN 382
H+ +E + L+ + +
Sbjct: 333 HSRDECLHIPSLQSIYDPLMQLARE 357
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI;
1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4
PDB: 1y0r_A* 1xfo_A
Length = 353
Score = 109 bits (272), Expect = 1e-24
Identities = 52/381 (13%), Positives = 104/381 (27%), Gaps = 46/381 (12%)
Query: 6 LEHLIQLIKCPSVTPQ-DGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEA 64
E L ++++ P V+ G +++ +K ++ N+ A E
Sbjct: 9 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKL--------GNVIAHKKGEG 60
Query: 65 PHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKY 124
P +M A H+D + ++ G VD K IA
Sbjct: 61 PKVMIAAHMDQIGLMV-------THIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFI 113
Query: 125 KNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
+G + + ++ +G + +KIG
Sbjct: 114 --YGVGASVPPHIQKPEDRKKAPDWDQIF---------IDIGAESKEEAEDMGVKIGTVI 162
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
+ G + GK V+ + +L + + F T E +
Sbjct: 163 TWDGRLERLGKHRFVSIAFDDRIAV---YTILEVAKQLKDAKADVYFVATVQEEVGLRGA 219
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
S I + ++ +++ + S H +
Sbjct: 220 RTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEE 279
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI---KDYCPVIEFGLVGRTMHALN 361
L ++ L GG +DA I K P + R +H+
Sbjct: 280 LAKKHEI-------------PYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNT 326
Query: 362 ENASLQDLEDLTCIYENFLQN 382
E +D++ + L+N
Sbjct: 327 EVVDERDVDATVELMTKALEN 347
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20/M25/M40, structural
genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 106 bits (264), Expect = 1e-23
Identities = 82/383 (21%), Positives = 136/383 (35%), Gaps = 39/383 (10%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
MT + + L LI PS++ ++ A L N ++ G K + V L F
Sbjct: 9 MTAEAVSLLKSLISIPSISREETQAADFLQNYIEAEGMQTGRKG------NNVWCLSPMF 62
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
+ P ++ HID V P + W PF+ GK+YG G D S+ + +
Sbjct: 63 DLKKPTILLNSHIDTVKPVN--GWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQL 120
Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
+N+ I L +E K+ + + IVGEPT I
Sbjct: 121 CRTSQNYNLIYLASCEEEVSG-----KEGIESVLPGLPPVSFAIVGEPTEMQPA-----I 170
Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
+G + ++T GK GH A + L + + F+ + P M +T
Sbjct: 171 AEKGLMVLDVTATGKAGHAARDEGDNAIYKVLNDIAWF-RDYRFEKESPLLGPVKMSVTV 229
Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
I+ G NV+P + +IR N+L++ + L EIR + S +
Sbjct: 230 INAGTQH-NVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIAC---------DAKARSFRL 279
Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFG-LVGRTMHA 359
+ + K G S SD + ++ G H
Sbjct: 280 NSSRIDEKHPFVQKAVKMGRIPFG-------SPTLSDQALMS--FASVKIGPGRSSRSHT 330
Query: 360 LNENASLQDLEDLTCIYENFLQN 382
E L+++E+ IY + L
Sbjct: 331 AEEYIMLKEIEEAIGIYLDLLDG 353
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI-2; 2.11A {Haemophilus somnus 129PT}
Length = 487
Score = 104 bits (258), Expect = 5e-23
Identities = 40/307 (13%), Positives = 93/307 (30%), Gaps = 30/307 (9%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT--- 62
+ Q+ P + ++ ++N K GF E + V N+ R
Sbjct: 14 WQWFDQICAIPHPSYKEEQLAQFIINWAKTKGFFAERDE--------VGNVLIRKPATVG 65
Query: 63 --EAPHLMFAGHIDVVPPGD---FNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV 117
++ H+D+VP + +++ P I + +G + +A+
Sbjct: 66 MENRKPVVLQAHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASAL 125
Query: 118 ARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKK------GEKWDACIVGEPTCN 171
A + +L+T EE +W+ + E+ +G
Sbjct: 126 AVLESNDIAHPELEVLLTMTEERGMEGAIGLRPNWLRSEILINTDTEENGEIYIGCAGGE 185
Query: 172 HII--GDTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNT 229
+ ++ + G +G + + + LL L + + +
Sbjct: 186 NADLELPIEYQVNNFEHCYQVVLKGLRGGHSGVDIHTGRANAIKVLLRFLAELQQNQPHF 245
Query: 230 TFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPK 289
F+ N+ +I N IP + + + + +++ + P
Sbjct: 246 DFTLANIRGGSIR------NAIPRESVATLVFNGDITVLQSAVQKFADVIKAELALTEPN 299
Query: 290 LSHTVHF 296
L T+
Sbjct: 300 LIFTLEK 306
Score = 65.1 bits (157), Expect = 2e-11
Identities = 18/165 (10%), Positives = 39/165 (23%), Gaps = 10/165 (6%)
Query: 221 NIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRL 280
G S + + V+ + +R + + ++S
Sbjct: 326 LNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLVRSLIESGKSYVASLLKSLA 385
Query: 281 IKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIP-LLSTSGGTSDAR 339
++ S + L G P + G
Sbjct: 386 -------SLAQGNINLSGDYPGWEPQSHSDILDLTKTIYAQVLGTDPEIKVIHAGLECGL 438
Query: 340 FIKDY--CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
K Y ++ G R H+ +E + +E + L +
Sbjct: 439 LKKIYPTIDMVSIGPTIRNAHSPDEKVHIPAVETYWKVLTGILAH 483
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase,
substrate specificity, metallopeptidase M42, hydrolase;
2.70A {Streptococcus pneumoniae R6}
Length = 355
Score = 100 bits (250), Expect = 4e-22
Identities = 31/387 (8%), Positives = 81/387 (20%), Gaps = 50/387 (12%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
MT + ++ + +V+ + L L + ++
Sbjct: 2 MT-TLFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGL--------GGIFGIK 52
Query: 61 ---GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV 117
+AP ++ A H+D V ++ G + + +
Sbjct: 53 HSEAVDAPRVLVASHMDEVGFMV-------SEIKPDGTFRVVEIGGWNPMVVSSQRFKLL 105
Query: 118 ARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDT 177
R + + G + + G
Sbjct: 106 TRDGHEI--PVISGSVPPHLTRGKGGPTMPAIADIV---------FDGGFADKAEAESFG 154
Query: 178 IKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNME 237
I+ G + + ++ ++ L + + E
Sbjct: 155 IRPGDTIVPDSSAILTANEKNIISKAWDNRYGVLMVSELAEALSGQKLGNELYLGSNVQE 214
Query: 238 ITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFS 297
+ + S +V ++ + G +
Sbjct: 215 EVGLRGAHTSTTKFDPEVFLAVDCSPA------------------GDVYGGQGKIGDGTL 256
Query: 298 SPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY--CPVIEFGLVGR 355
+ L + GGT P G+ R
Sbjct: 257 IRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGKGGTDAGAAHLKNGGVPSTTIGVCAR 316
Query: 356 TMHALNENASLQDLEDLTCIYENFLQN 382
+H+ ++ D + + ++
Sbjct: 317 YIHSHQTLYAMDDFLEAQAFLQALVKK 343
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, complex with N-carbamyl-beta-alanine,
hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB:
2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 100 bits (248), Expect = 9e-22
Identities = 50/394 (12%), Positives = 99/394 (25%), Gaps = 37/394 (9%)
Query: 16 PSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFG--TEAPHLMFAGHI 73
+ T DG N + LG ++ + N++A + H+
Sbjct: 63 LAGTALDGAMRDWFTNECESLGCKVKVDK--------IGNMFAVYPGKNGGKPTATGSHL 114
Query: 74 DVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV--ARFIPKYKNF---- 127
D P + V ARF
Sbjct: 115 DTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGARFARSCTGSSVWS 174
Query: 128 GSISLLITGDEEGPAINGTKKMLSWIEKKGEKW-----------DACIVGEPTCNHIIGD 176
+SL + + + ++ G DA I+ D
Sbjct: 175 HDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILED 234
Query: 177 TIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN- 235
K + H H P R L + +
Sbjct: 235 ENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGL 294
Query: 236 MEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVH 295
ID S N+IP +V + + R T+ +E + + I+ + +
Sbjct: 295 FTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYE 354
Query: 296 FSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLS-TSGGTSDARFIKDYCPVIEFGLV- 353
+ + +S+S + + SG D+ + P ++
Sbjct: 355 SETLQVSPAVNFHEVCIECVSRSAFAQFKKDQVRQIWSGAGHDSCQTAPHVPT---SMIF 411
Query: 354 ----GRTMHALNENASLQDLEDLTCIYENFLQNW 383
H E +S +++E+ + + N+
Sbjct: 412 IPSKDGLSHNYYEYSSPEEIENGFKVLLQAIINY 445
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A
{Xanthomonas campestris} PDB: 2f8h_A
Length = 369
Score = 99 bits (247), Expect = 9e-22
Identities = 67/389 (17%), Positives = 112/389 (28%), Gaps = 35/389 (8%)
Query: 1 MTPDCLEHLIQLIKCPSVTP-----QDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKN 55
+ LEHL L+ + P +GG F L L GF +E D +
Sbjct: 7 LLASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLP--GFQVEVIDHGDG----AVS 60
Query: 56 LYARFGTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIA 115
LYA GT P +F H+D VP HW+ P E ++ G G+ D+KG+ A
Sbjct: 61 LYAVRGT--PKYLFNVHLDTVPDSP--HWSADPHVMRRTEDRVIGLGVCDIKGAAAAL-- 114
Query: 116 AVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIG 175
G + L + DEE L+ G +DA +V EPT + +
Sbjct: 115 ----VAAANAGDGDAAFLFSSDEEANDPRCIAAFLAR----GLPYDAVLVAEPTMSEAV- 165
Query: 176 DTIKIGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235
+ RG S + G+ GH + ++
Sbjct: 166 ----LAHRGISSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHVESLAHARFGGL 221
Query: 236 MEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVH 295
+ + + + G +
Sbjct: 222 TGLRFNIGRVDGGIKANMIAPAAELRFGFRPLPSMDVDGLL--ATFAGFADPAAAHFEET 279
Query: 296 FSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVG 354
F P P + L ++ + + + T +A + +G
Sbjct: 280 FRGPSLPSGDIARAEERRLAARDVADALDLPIGNAVDFWT-EASLFSAGGYTALVYGPGD 338
Query: 355 -RTMHALNENASLQDLEDLTCIYENFLQN 382
H +E +L L+ +
Sbjct: 339 IAQAHTADEFVTLAQLQRYVESVNRIING 367
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI,
protein structure initiative, midwest center for
structural genomics; 2.15A {Shigella flexneri 2a str}
SCOP: b.49.3.1 c.56.5.4
Length = 348
Score = 99.0 bits (245), Expect = 2e-21
Identities = 42/380 (11%), Positives = 98/380 (25%), Gaps = 53/380 (13%)
Query: 6 LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF-GTEA 64
L L L + ++ + IL+ L + ++ R +
Sbjct: 6 LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGL--------GSVLIRLNESTG 57
Query: 65 PHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKY 124
P +M H+D V + EG I + +++ + +
Sbjct: 58 PKVMICAHMDEVGFM---------VRSISREGAIDVLPVGNVRMAARQLQPVRITTREEC 108
Query: 125 KNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
K G + G++ +G T + ++ I+ G R
Sbjct: 109 KIPGLLDGDRQGNDVSA-------------------MRVDIGARTYDEVMQAGIRPGDRV 149
Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
+ + Q + L+ LL +L + ++ E + G
Sbjct: 150 TFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDA-ELPAEVWLVASSSEEVGLRGG 208
Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
+ + V + + + + + ++ ++
Sbjct: 209 QTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSD---KSLIAPPKLTAWI 265
Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY--CPVIEFGLVGRTMHALNE 362
T + + ++GGT P + G R H
Sbjct: 266 ETVAAE----------IGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAAS 315
Query: 363 NASLQDLEDLTCIYENFLQN 382
A +D+ + + +Q
Sbjct: 316 IADCRDILQMEQLLSALIQR 335
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative
PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} SCOP:
b.49.3.1 c.56.5.4
Length = 340
Score = 96.8 bits (239), Expect = 8e-21
Identities = 41/381 (10%), Positives = 93/381 (24%), Gaps = 59/381 (15%)
Query: 8 HLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF--GTEAP 65
+L +L P V+ +G + + ++ L ++ NL A +
Sbjct: 3 YLKELSMMPGVSGDEGKVRDFIKSKIEGLVDNLYTDVL--------GNLIALKRGRDSSK 54
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
L+ + H+D V +++ + G+ G + I K
Sbjct: 55 KLLVSAHMDEVGFV-------------VSKIEKDGKVSFLPVGGVDPRILPGKVVQVKNL 101
Query: 126 NF--GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRR 183
G + + DEE + + ++ + + + K GR
Sbjct: 102 KGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYVSIGDYVSFVSDYIEKNGRA 161
Query: 184 GSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243
+ + +T F T E T +
Sbjct: 162 VGKAFDDRAGCSVLIDVLESGVSPA------------------YDTYFVFTVQEETGLRG 203
Query: 244 GNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPV 303
+ + E ++ + + + V
Sbjct: 204 SAVVVEQLKPTCAIVVETTTAGDNPELEERKWATHLGDGPAITFYHRGYVIPKEIFQTIV 263
Query: 304 FLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI---KDYCPVIEFGLVGRTMHAL 360
+ + + + G +DA P R +H+
Sbjct: 264 DTAKNNDIP-------------FQMKRRTAGGTDAGRYARTAYGVPAGVISTPARYIHSP 310
Query: 361 NENASLQDLEDLTCIYENFLQ 381
N L D E+ + + ++
Sbjct: 311 NSIIDLNDYENTKKLIKVLVE 331
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Length = 343
Score = 91.0 bits (224), Expect = 4e-19
Identities = 35/378 (9%), Positives = 93/378 (24%), Gaps = 53/378 (14%)
Query: 7 EHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAPH 66
E + +L + + ++ I++ L+ NL G+
Sbjct: 15 ELIRKLTEAFGPSGREEEVRSIILEELEGHIDGHRIDGLG--------NLIVWKGSGEKK 66
Query: 67 LMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKN 126
++ HID + + G ++ G ++ ++ R
Sbjct: 67 VILDAHIDEIGVV-------------VTNVDDKGFLTIEPVGGVSPYMLLGKRIR----- 108
Query: 127 FGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSL 186
G + G + +D + + + +
Sbjct: 109 ------FENGTIGVVGMEGETTEERQENVRKLSFDKLFIDIGANSREEAQKMCPIGSFGV 162
Query: 187 SGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNP 246
+ +V+ ++ + + + E + +
Sbjct: 163 YDSGFVEVSGKYVSKAMDDRIGCAVIVEVFKR----IKPAVTLYGVFSVQEEVGLVGASV 218
Query: 247 SKNVIPAQVKMSFNIRF-NDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFL 305
+ +PA ++ ++ D S + + +
Sbjct: 219 AGYGVPADEAIAIDVTDSADTPKAIKRHAMRLSGGPALKVKDRASISSKRILENLIEIAE 278
Query: 306 THDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY--CPVIEFGLVGRTMHALNEN 363
D K + T GGT+ + + P + R +H+ +E
Sbjct: 279 KFDIKYQ--------------MEVLTFGGTNAMGYQRTREGIPSATVSIPTRYVHSPSEM 324
Query: 364 ASLQDLEDLTCIYENFLQ 381
+ D+E + +L
Sbjct: 325 IAPDDVEATVDLLIRYLG 342
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structural genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 83.5 bits (205), Expect = 7e-17
Identities = 35/385 (9%), Positives = 89/385 (23%), Gaps = 82/385 (21%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
+ ++ L +L + + + ++ ++ S + + + +
Sbjct: 15 LYFQGMQLLKELCSIHAPSGNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQ-DCIVLV 73
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
P H+D + + P + K
Sbjct: 74 FGN-PRTAVFAHMDSIGFTVSYNNHLHPIGSP------------SAKEGYRLVG------ 114
Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
+ + + D + E G +
Sbjct: 115 -------------KDSNGDIEGVLKI-------------VDEEWMLETDRLIDRGTEVTF 148
Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
G+ + L L L + + T E
Sbjct: 149 KPDFREEGDFILT----PYLDDRLGVWTALELAKTLE----------HGIIAFTCWEEHG 194
Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
S + + +F+++ + + + + E + + I
Sbjct: 195 ----GGSVAYLARWIYETFHVKQSLICDITWVTEGVEAGKGVAISM-------------- 236
Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFI---KDYCPVIEFGLVGRTM 357
+ +K + + + T L G SD R + G +
Sbjct: 237 -RDRMIPRKKYVNRIIELARQTDIPFQLEVEGAGASDGRELQLSPYPWDWCFIGAPEKDA 295
Query: 358 HALNENASLQDLEDLTCIYENFLQN 382
H NE +D+E + +Y+ ++
Sbjct: 296 HTPNECVHKKDIESMVGLYKYLMEK 320
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein
structure initiative, CESG, AT5G56660, ILL2,
indole-3-acetic acid, auxin; 2.00A {Arabidopsis
thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Length = 418
Score = 53.8 bits (128), Expect = 7e-08
Identities = 39/251 (15%), Positives = 71/251 (28%), Gaps = 19/251 (7%)
Query: 28 ILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT-EAPHLMFAGHIDVVPPGDFNHWTY 86
++ + L+L+G T + GT E P + +D +P + W +
Sbjct: 53 LIRSELELIGIKYRYPVAIT-------GVIGYIGTGEPPFVALRADMDALPIQEGVEWEH 105
Query: 87 PPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGT 146
A + G + + A + +LI E
Sbjct: 106 KSKIAGKMHACGH-------DGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAK 158
Query: 147 KKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTE 206
K K E + G+ E I GK GH A P T
Sbjct: 159 KMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTI 218
Query: 207 NPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDL 266
+P+ ++ L + + S + G + NVIP + +
Sbjct: 219 DPVVAASSIVLSLQQLVSRETDPLDSKVVT--VSKVNGGNAFNVIPDSITIGGT--LRAF 274
Query: 267 WNEKTLKEEIR 277
L++ ++
Sbjct: 275 TGFTQLQQRVK 285
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 5e-07
Identities = 64/395 (16%), Positives = 116/395 (29%), Gaps = 171/395 (43%)
Query: 45 FQTKNTSIVKNLYARFGTEAPHLMFAGHIDVVPPGDFN-----HWTYPPFS----ATIAE 95
F+ + L A FG + G+ D F + TY AE
Sbjct: 146 FRAVGEGNAQ-LVAIFGGQ-------GNTDDY----FEELRDLYQTYHVLVGDLIKFSAE 193
Query: 96 ------------GKIYGRGIVD----MKGSIAC----FIAAVARFIPKYKNFGSISLLIT 135
K++ +G+ + ++ ++ ++ IS
Sbjct: 194 TLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIP-----------ISC--- 238
Query: 136 GDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGR-RGSLSGEITIHG 194
P I G ++ + + T ++G T G R L G T H
Sbjct: 239 -----PLI-GVIQLAHY----------VV----TA-KLLGFT--PGELRSYLKG-ATGH- 273
Query: 195 KQGHVA---------YPHLTENPIRGLIPLLHQLTNIGF----DTGNTTFSPTNMEITTI 241
QG V + + + + L IG NT+ P+ +E ++
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGVRCYEAYPNTSLPPSILE-DSL 328
Query: 242 DVGN--PSKNVIPAQVKMSFNIRFNDLWNEKTLKEEI--------RSR-----LIKGIQN 286
+ PS P M +I +L ++ +++ + + L+ G +N
Sbjct: 329 ENNEGVPS----P----M-LSIS--NL-TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 287 V----PKLS-------------------HTVHFSS----------PVSPVFLTH------ 307
+ P S + FS PV+ F +H
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 308 DRKLTSLLSKSIYNTTGN---IPLLSTSGGTSDAR 339
D L+ ++ + IP+ T G SD R
Sbjct: 437 DLINKDLVKNNV-SFNAKDIQIPVYDTFDG-SDLR 469
Score = 40.3 bits (94), Expect = 8e-04
Identities = 51/325 (15%), Positives = 86/325 (26%), Gaps = 138/325 (42%)
Query: 66 HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAV---ARFIP 122
H + + PG+ + G + +G+V A IA F
Sbjct: 248 HYVVTAKLLGFTPGELRSY----LKGA--TG--HSQGLV-----TAVAIAETDSWESF-- 292
Query: 123 KYKN--------F--G----------SISLLITGD--EEGPAINGTKK-MLSWIEKKG-- 157
+ + F G S+ I D E G MLS I
Sbjct: 293 -FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLS-I--SNLT 345
Query: 158 ----EKWDACIVGEPTCNHIIGDTIKI------GRR-----G---SLSG------EITIH 193
+ V + N + ++ G + G SL G +
Sbjct: 346 QEQVQD----YVNK--TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 194 GK--QGHVAYPHLTE------N---PIRG------LIP----LLHQLTNIGFDTGNTTFS 232
Q + P +E N P+ L+P + L +F+
Sbjct: 400 SGLDQSRI--PF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-----SFN 451
Query: 233 PTNMEI------TTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQN 286
+++I D+ S ++ V + W E T
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--W-ETTT-------------- 494
Query: 287 VPKLSHTVHF----SSPVSPVFLTH 307
K +H + F +S + LTH
Sbjct: 495 QFKATHILDFGPGGASGLGV--LTH 517
Score = 32.2 bits (73), Expect = 0.23
Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 59/166 (35%)
Query: 232 SPTNMEITTIDVG-NPSKNVIPAQVKMSF-NIRFNDLWNEKTLKE--------EIRSRLI 281
+P N+ TI G K + M F I L EK KE RS
Sbjct: 1668 NPVNL---TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-- 1722
Query: 282 KGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIY---NTTGNIPLLSTSGGTSDA 338
KG+ LS T F+ P LT L+ K+ + + G IP +DA
Sbjct: 1723 KGL-----LSAT-QFTQPA----------LT-LMEKAAFEDLKSKGLIP--------ADA 1757
Query: 339 RFIKDYCPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNWF 384
F G H+L E A+L L D+ I E+ ++ F
Sbjct: 1758 TF------------AG---HSLGEYAALASLADVMSI-ESLVEVVF 1787
Score = 29.9 bits (67), Expect = 0.99
Identities = 34/210 (16%), Positives = 52/210 (24%), Gaps = 88/210 (41%)
Query: 29 LVNTLKLLGF--SIEEKDFQTKNTSIVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTY 86
LV K LG+ S+ E + ++ F + D+ H
Sbjct: 60 LV--GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-----YLEGNDI-------H--- 102
Query: 87 PPFSATIAE-GKIYGRGIVDMKGSIACFIAAVA---RFIPKYKNFGSISLLITGDEEGPA 142
A A+ + +V K I +I A R K S S L EG A
Sbjct: 103 ----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK----KSNSALFRAVGEGNA 154
Query: 143 INGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHV--- 199
++ + I G QG+
Sbjct: 155 ------------------------------------QL---------VAIFGGQGNTDDY 169
Query: 200 ---------AYPHLTENPIRGLIPLLHQLT 220
Y L + I+ L +L
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Score = 29.5 bits (66), Expect = 1.2
Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 50/183 (27%)
Query: 253 AQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPV--FLTH--- 307
++ + + L+E+ L + + + ++P V FL +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG---FAADDEPTTPAELVGKFLGYVSS 70
Query: 308 -----DRKLTSLLSKSIYNT-------TGNI-----PLLSTSGGTSDAR--FIKDY---C 345
+ +I LL + T IK+Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 346 PVIEFGLVGRTMHAL-----NENASL--------------QDLEDLTCIYENFLQNWFIT 386
+ + ++ AL NA L ++L DL Y + + I
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD-LIK 189
Query: 387 PSQ 389
S
Sbjct: 190 FSA 192
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 88
Score = 45.7 bits (108), Expect = 2e-05
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 323 TGNIPLLSTSGGTSDARFIKDYC-PVIEFGLVGRT---MHALNENASLQDLEDLTCIYEN 378
D R+I+ P + F + RT +H +E IY
Sbjct: 14 MNLTLEPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTR 73
Query: 379 FLQN 382
L
Sbjct: 74 LLPA 77
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding,
structural genomics, PSI, protein structure initiative;
2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Length = 404
Score = 42.6 bits (99), Expect = 2e-04
Identities = 51/325 (15%), Positives = 104/325 (32%), Gaps = 16/325 (4%)
Query: 28 ILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAPHLMFAGHIDVVPPGDFNHWTYP 87
+ L+ I + T ++ + + + P + ID +P + + +
Sbjct: 57 KIRRWLEEEQIEILDVPQLK--TGVIAEI--KGREDGPVIAIRADIDALPIQEQTNLPF- 111
Query: 88 PFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAINGTK 147
A+ +G ++ G SI + + + + G++ + EE K
Sbjct: 112 ---ASKVDGTMHACGHDFHTASIIGTAMLLNQR--RAELKGTVRFIFQPAEEIA-AGARK 165
Query: 148 KMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHLTEN 207
+ + + IG EI I GK GH + P+ + +
Sbjct: 166 VLEAGVLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSID 225
Query: 208 PIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLW 267
PI ++ L + + N + + T S NVIP Q +M +R
Sbjct: 226 PIAAAGQIISGLQS--VVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEMEGTVRTFQKE 283
Query: 268 NEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIP 327
+ + E +R R+ +GI + + V +D + S++
Sbjct: 284 ARQAVPEHMR-RVAEGIAAGYGAQAEFKWFPYLPSVQ--NDGTFLNAASEAAARLGYQTV 340
Query: 328 LLSTSGGTSDARFIKDYCPVIEFGL 352
S G D ++ P +
Sbjct: 341 HAEQSPGGEDFALYQEKIPGFFVWM 365
>3l6s_A Aspartyl aminopeptidase; hydrolase, structural genomics consortium,
SGC, metal-binding, metalloprotease, protease, zinc;
HET: SD3; 2.20A {Homo sapiens}
Length = 485
Score = 34.3 bits (78), Expect = 0.044
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 331 TSGGTSDARFIKDY--CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNW 383
T GT+ + V++ G MH++ E A + +++ F + +
Sbjct: 421 TPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELF 475
>1ypx_A Putative vitamin-B12 independent methionine synthase family
protein; alpha-beta protein, whose fold resembles A
TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e}
Length = 375
Score = 32.5 bits (73), Expect = 0.19
Identities = 24/205 (11%), Positives = 58/205 (28%), Gaps = 16/205 (7%)
Query: 85 TYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEGPAIN 144
P Y + D + A + I + + G L + D+ +
Sbjct: 137 IPSPAMLHYRGDIEYQPYLDDAEKFANDLATAYQKAIQAFYDAGCRYLQL--DDTSWSYL 194
Query: 145 GTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEITIHGKQGHVAYPHL 204
+ + + ++G + + + IT+H +G+ +
Sbjct: 195 CSDEQREVVRQRGFDPETL------QETYKNLINEAIKHKPADMVITMHICRGNFRSTWI 248
Query: 205 TENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFN 264
E + L NI + V P ++ + +
Sbjct: 249 AEGGYGPVAETLFGKLNIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLI----TSKTG 304
Query: 265 DLWNEKTLKEEIRSRLIKGIQNVPK 289
+L + + I++R+ + + VP
Sbjct: 305 ELED----EAAIKARIEEASEIVPL 325
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2,
structural genomics, PSI, protein structure initiative;
3.00A {Pseudomonas aeruginosa}
Length = 428
Score = 31.6 bits (71), Expect = 0.31
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 331 TSGGTSDARFIKDY--CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQNW 383
G++ ++ GL MH++ E A DL L + F +
Sbjct: 371 MGCGSTIGPITASQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASS 425
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC,
structural genomics, PSI, protein structure initiative;
3.20A {Clostridium acetobutylicum}
Length = 461
Score = 30.8 bits (69), Expect = 0.54
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 346 PVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
VI+ G+ MHA E +S D+ + Y FL N
Sbjct: 425 QVIDCGVALLNMHAPWEISSKADIYETKNGYSAFLNN 461
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia
burgdorferi B31, YSCI, structural genomics, PSI; 3.20A
{Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Length = 458
Score = 30.0 bits (67), Expect = 0.90
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 331 TSGGTSDARFIKDY-CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQ 381
GG + A+F+ Y I+ G +MH+ E S DL + Y+ F +
Sbjct: 406 EGGGGTVAKFLAGYGIRTIDMGPAVISMHSPMEITSKFDLYNAYLAYKAFYR 457
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural
genomics, PSI, protein structure initiative; 2.80A
{Thermotoga maritima}
Length = 450
Score = 29.6 bits (66), Expect = 1.1
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 331 TSGGTSDARFIKDY-CPVIEFGLVGRTMHALNENASLQDLEDLTCIYENFLQN 382
GG + A+F + VI+ G MH+ E +S DL + Y + ++
Sbjct: 397 QGGGGTIAKFFAERGSDVIDMGPALLGMHSPFEISSKADLFETYVAYRSLMEK 449
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 1.1
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 131 SLLITGDEEGP--AINGTKKM 149
SL + D+ P AI T M
Sbjct: 28 SLKLYADDSAPALAIKAT--M 46
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation,
open conformation; 2.70A {Eubacterium barkeri}
Length = 391
Score = 29.1 bits (65), Expect = 1.6
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 224 FDTGNTT----FSPTNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLK---EEI 276
TGN S +++++ +DV NP V V M+ + + L EEI
Sbjct: 178 LPTGNVVDVLSTSKGDIDVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEI 237
Query: 277 RSR------LIKGIQNVPKLSHTVHFSSPVSP 302
R++ + + + S + V+
Sbjct: 238 RAKCCVKIGMAATEKEASEKSPAFPMIAFVTK 269
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus}
SCOP: b.61.6.1
Length = 178
Score = 28.5 bits (63), Expect = 2.7
Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 15/148 (10%)
Query: 126 NFGSISLLITGDEEGPAINGTKKM-LSWIEKKGEKWDACIVGEPTCNHIIGDTIKI---- 180
+ +S + DE G I + + I + D + + I+
Sbjct: 27 SLKVLSGSVETDEAGRPIQVEAVIDAASIATGEPQRDGHLRSADFLHAEQYPEIRFVSTQ 86
Query: 181 -----GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235
G R + G +TI V + I + + + + +
Sbjct: 87 IEPLGGNRYRIQGNLTIRDITKPVTLEAE----VSAPIKDPWGMQRVAAS-ASGQINRKD 141
Query: 236 MEITTIDVGNPSKNVIPAQVKMSFNIRF 263
+T V ++ +VK + +
Sbjct: 142 WNLTWNQVLELGALLVGEEVKFNLEVEA 169
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel,
protein-DNA complex, double helix, DNA encirclement,
transcription/DNA complex; 2.86A {Homo sapiens} SCOP:
b.1.18.1 b.2.5.3
Length = 281
Score = 27.8 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 273 KEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTT 323
K+ R+RL+ + + K T+ +P SP+ T + +L KS+++ +
Sbjct: 143 KKSTRARLVFRVNIMRKDGSTLTLQTPSSPILCTQPAGVPEILKKSLHSCS 193
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,475,484
Number of extensions: 162056
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 61
Length of query: 389
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 295
Effective length of database: 3,414,294
Effective search space: 1007216730
Effective search space used: 1007216730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)