BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate
desuccinylase [Candidatus Liberibacter asiaticus str. psy62]
         (389 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 389

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
           MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF
Sbjct: 1   MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60

Query: 61  GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
           GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF
Sbjct: 61  GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120

Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
           IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI
Sbjct: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180

Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
           GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT
Sbjct: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240

Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
           IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV
Sbjct: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300

Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360
           SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL
Sbjct: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360

Query: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389
           NENASLQDLEDLTCIYENFLQNWFITPSQ
Sbjct: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389


>gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 398

 Score = 26.2 bits (56), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 213 IPLLHQLTNIGFDTGNTTFSPTNME-ITTIDVGNPSKNVIPA 253
           IPL+ +L     D GN   + + +  IT ID+ + ++ ++ A
Sbjct: 353 IPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHA 394


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 19   TPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNL 56
            TP+   +F +LV  ++ LG SI+ ++ +TKN++ ++ +
Sbjct: 1343 TPE---SFNVLVKEMQALGLSIDLENSRTKNSAKMEEI 1377


>gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 360

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 180 IGRRGSLSGEITIHGKQGHVAYP----HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235
           I  R  +  + T    QG VA P    H T N +  LI +  ++  +    G  TF P  
Sbjct: 172 IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK 231

Query: 236 MEITTIDVGNPSKNVIPAQVKMSFN 260
           +E T   + +     I A    + N
Sbjct: 232 VEDTDDHIMHSEIGFIDAPTAQALN 256


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 23.9 bits (50), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 210 RGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243
           +G I L  +L   GFD  +  FSP + ++  + +
Sbjct: 103 KGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQI 136


>gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 351

 Score = 23.5 bits (49), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 124 YKNFGSISLLITGDEEGPAING 145
           Y ++GS+S  I  D++  AING
Sbjct: 155 YLHYGSVSGNICSDKKATAING 176


>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 23.1 bits (48), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 157 GEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEI 190
           G+    C V   T NH I   IKIG R ++  +I
Sbjct: 78  GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111


>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 215

 Score = 23.1 bits (48), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 221 NIGFDTGNTTFSPTNMEITTIDV 243
           N+GF+T N   +PT M +  + V
Sbjct: 76  NLGFETFNEIVNPTTMRVLVLPV 98


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,487
Number of Sequences: 1233
Number of extensions: 12095
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 389
length of database: 328,796
effective HSP length: 76
effective length of query: 313
effective length of database: 235,088
effective search space: 73582544
effective search space used: 73582544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)