BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter asiaticus str. psy62] (389 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter asiaticus str. psy62] Length = 389 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/389 (100%), Positives = 389/389 (100%) Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF Sbjct: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60 Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF Sbjct: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120 Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI Sbjct: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180 Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT Sbjct: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240 Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV Sbjct: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300 Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL Sbjct: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360 Query: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389 NENASLQDLEDLTCIYENFLQNWFITPSQ Sbjct: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389 >gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 213 IPLLHQLTNIGFDTGNTTFSPTNME-ITTIDVGNPSKNVIPA 253 IPL+ +L D GN + + + IT ID+ + ++ ++ A Sbjct: 353 IPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHA 394 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 3/38 (7%) Query: 19 TPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNL 56 TP+ +F +LV ++ LG SI+ ++ +TKN++ ++ + Sbjct: 1343 TPE---SFNVLVKEMQALGLSIDLENSRTKNSAKMEEI 1377 >gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 360 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 180 IGRRGSLSGEITIHGKQGHVAYP----HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235 I R + + T QG VA P H T N + LI + ++ + G TF P Sbjct: 172 IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK 231 Query: 236 MEITTIDVGNPSKNVIPAQVKMSFN 260 +E T + + I A + N Sbjct: 232 VEDTDDHIMHSEIGFIDAPTAQALN 256 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 210 RGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243 +G I L +L GFD + FSP + ++ + + Sbjct: 103 KGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQI 136 >gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 124 YKNFGSISLLITGDEEGPAING 145 Y ++GS+S I D++ AING Sbjct: 155 YLHYGSVSGNICSDKKATAING 176 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 23.1 bits (48), Expect = 7.3, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 157 GEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEI 190 G+ C V T NH I IKIG R ++ +I Sbjct: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111 >gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 221 NIGFDTGNTTFSPTNMEITTIDV 243 N+GF+T N +PT M + + V Sbjct: 76 NLGFETFNEIVNPTTMRVLVLPV 98 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,487 Number of Sequences: 1233 Number of extensions: 12095 Number of successful extensions: 24 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 9 length of query: 389 length of database: 328,796 effective HSP length: 76 effective length of query: 313 effective length of database: 235,088 effective search space: 73582544 effective search space used: 73582544 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)