HHsearch alignment for GI: 254780783 and conserved domain: COG4957

>COG4957 Predicted transcriptional regulator [Transcription].
Probab=100.00  E-value=0  Score=382.45  Aligned_cols=144  Identities=52%  Similarity=0.819  Sum_probs=130.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEE
Q ss_conf             98655677867899999999999973688888999999999999999502666665557854589985736513888459
Q gi|254780783|r    1 MDDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKSIENGCLY   80 (149)
Q Consensus         1 m~~~~~~~~~~~l~~lta~IV~A~vs~n~v~~~el~~lI~~v~~aL~~l~~~~~~~~~~~~~~~~PAv~i~kSi~~d~ii   80 (149)
T Consensus         1 ~~~~~~~~~~~~liELTA~IVsAYVsnN~vp~~eLP~LI~~vh~aL~~~~~p~~~~--~~~~~~~PAV~~kKSVtpD~Ii   78 (148)
T COG4957           1 MMTETSDESNDLLIELTADIVSAYVSNNPVPVSELPDLIAQVHAALAGTGGPAEPP--VPVEKQKPAVPIKKSVTPDYII   78 (148)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEE
T ss_conf             97433453158999999999999970798781045899999999986038988888--8766668998965465888687


Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             743610002589998674399989999972737988322999999999999981998101005666
Q gi|254780783|r   81 CLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMGLGRGRKKRVLT  146 (149)
Q Consensus        81 ClecGk~~K~LkRHL~t~hgLtp~eYR~kwGLp~dyPlvAp~Ys~~Rs~~Ak~~GLg~~~rk~~~~  146 (149)
T Consensus        79 cLEDGkkfKSLKRHL~t~~gmTPd~YR~KW~LP~dYPMvAPnYAa~RS~LAK~mGLGrk~~~~~~~  144 (148)
T COG4957          79 CLEDGKKFKSLKRHLTTHYGLTPDEYRAKWGLPPDYPMVAPNYAAARSQLAKAMGLGRKRKAGAPA  144 (148)
T ss_pred             EECCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             702685227899987322599979999843999888764647899999999984768787777775