Query         gi|254780783|ref|YP_003065196.1| transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 149
No_of_seqs    114 out of 407
Neff          4.8 
Searched_HMMs 13730
Date          Wed Jun  1 06:47:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780783.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1d4ua2 g.39.1.5 (A:1-36) DNA   87.4   0.076 5.5E-06   30.5   0.8   16   74-89      1-16  (36)
  2 d1ubdc2 g.37.1.1 (C:323-350) Y  80.1    0.29 2.1E-05   26.8   1.3   19   79-97      3-24  (28)
  3 d1d5ya2 a.4.1.8 (A:57-121) Rob  72.9    0.52 3.8E-05   25.2   0.9   34   79-112    19-53  (65)
  4 d1wira_ g.37.1.5 (A:) Protein   68.1     2.3 0.00017   21.0   3.4   37   77-113    14-53  (121)
  5 d1bl0a2 a.4.1.8 (A:63-124) Mar  60.7    0.97 7.1E-05   23.5   0.3   32   80-111    20-52  (62)
  6 d2ctda2 g.37.1.1 (A:61-90) Zin  59.8     1.5 0.00011   22.3   1.1   24   78-101     2-28  (30)
  7 d1nexa1 a.157.1.1 (A:116-185)   54.0     3.4 0.00024   20.0   2.2   19   99-117    44-62  (70)
  8 d2ct1a2 g.37.1.1 (A:8-43) Tran  51.0       3 0.00022   20.3   1.6   23   78-100     8-33  (36)
  9 d1x6ha2 g.37.1.1 (A:8-43) Tran  50.4     3.1 0.00023   20.2   1.6   24   77-100     7-33  (36)
 10 d2epra1 g.37.1.1 (A:350-384) P  49.2       4 0.00029   19.5   2.0   28   76-103     3-33  (35)
 11 d1mzba_ a.4.5.42 (A:) Ferric u  46.1     9.8 0.00071   17.0   4.3   85   18-104    19-122 (134)
 12 d1sp1a_ g.37.1.1 (A:) Transcri  43.6     4.5 0.00033   19.2   1.5   20   80-99      4-26  (29)
 13 d1a1ia2 g.37.1.1 (A:132-159) Z  42.6     4.5 0.00033   19.2   1.4   20   79-98      4-26  (28)
 14 d2adra1 g.37.1.1 (A:102-130) A  40.6     4.7 0.00034   19.1   1.2   19   80-98      4-25  (29)
 15 d1wjpa3 g.37.1.1 (A:67-107) Zi  40.2     5.9 0.00043   18.4   1.7   25   77-101     2-29  (41)
 16 d1x6ea2 g.37.1.1 (A:41-66) Zin  38.6     4.7 0.00034   19.1   0.9   18   80-97      4-24  (26)
 17 d2epsa1 g.37.1.1 (A:408-446) P  38.2     5.4 0.00039   18.7   1.2   24   77-100     4-30  (39)
 18 d2o70a1 a.288.1.1 (A:2-166) OH  36.2       6 0.00044   18.4   1.2   12  104-115   108-119 (165)
 19 d1x6ea1 g.37.1.1 (A:8-40) Zinc  34.9     7.2 0.00052   17.9   1.4   22   77-98      6-30  (33)
 20 d1srka_ g.37.1.1 (A:) Zinc fin  34.4     6.4 0.00047   18.2   1.1   23   77-100     6-31  (35)
 21 d2cota2 g.37.1.1 (A:7-44) Zinc  33.7     6.1 0.00044   18.4   0.9   21   77-97     11-34  (38)
 22 d1p7aa_ g.37.1.1 (A:) Kruppel-  32.2     8.5 0.00062   17.4   1.4   21   77-97     10-33  (37)
 23 d2o8ia1 a.288.1.1 (A:1-165) Hy  32.2     7.6 0.00055   17.7   1.2   13  104-116   105-117 (165)
 24 d1bboa1 g.37.1.1 (A:1-28) Enha  32.2     7.7 0.00056   17.7   1.2   22   79-100     2-26  (28)
 25 d2q37a1 a.288.1.1 (A:6-160) OH  29.9     8.8 0.00064   17.3   1.2   12  104-115    96-107 (155)
 26 d2glia5 g.37.1.1 (A:229-257) F  29.5     9.4 0.00068   17.2   1.3   21   80-100     4-29  (29)
 27 d2csha1 g.37.1.1 (A:8-60) Zinc  28.1      11 0.00084   16.6   1.5   11   79-89     31-41  (53)
 28 d2czra1 c.52.4.1 (A:1-218) TBP  27.5      11 0.00081   16.7   1.4   27   78-105   146-174 (218)
 29 d1x6ha1 g.37.1.1 (A:44-80) Tra  26.7      17  0.0013   15.4   2.2   27   76-102     2-31  (37)
 30 d2qfaa1 g.52.1.1 (A:5-141) Ant  23.8      12 0.00087   16.5   0.9   31   75-111    47-77  (137)
 31 d1kl7a_ c.79.1.1 (A:) Threonin  21.9      25  0.0018   14.5   2.8   50   78-128   442-502 (511)
 32 d1bl0a1 a.4.1.8 (A:9-62) MarA   21.7      24  0.0017   14.5   2.2   28   81-108    26-53  (54)
 33 d1dtdb_ g.30.1.1 (B:) Carboxyp  20.2      16  0.0011   15.7   0.9   13   74-86      7-19  (61)

No 1  
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.39  E-value=0.076  Score=30.54  Aligned_cols=16  Identities=31%  Similarity=0.528  Sum_probs=13.6

Q ss_pred             CCCCCEEECCCCHHHH
Q ss_conf             3888459743610002
Q gi|254780783|r   74 IENGCLYCLEDGMQFK   89 (149)
Q Consensus        74 i~~d~iiClecGk~~K   89 (149)
                      +..|+.+|+|||++|-
T Consensus         1 ~e~dy~~C~eCg~~F~   16 (36)
T d1d4ua2           1 MEFDYVICEECGKEFM   16 (36)
T ss_dssp             CCCCCEECTTTCCEES
T ss_pred             CCCCHHHHHHHCCHHH
T ss_conf             9851789988573778


No 2  
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.14  E-value=0.29  Score=26.78  Aligned_cols=19  Identities=42%  Similarity=0.567  Sum_probs=15.6

Q ss_pred             EEECCCCHHHH---HHHHHHHH
Q ss_conf             59743610002---58999867
Q gi|254780783|r   79 LYCLEDGMQFK---SLKRHLKT   97 (149)
Q Consensus        79 iiClecGk~~K---~LkRHL~t   97 (149)
                      -+|-||||.|.   -||||.+-
T Consensus         3 hvc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1398886999989887777510


No 3  
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.89  E-value=0.52  Score=25.18  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             EEECCCCH-HHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf             59743610-00258999867439998999997273
Q gi|254780783|r   79 LYCLEDGM-QFKSLKRHLKTHHNMTPDEYRIKWNL  112 (149)
Q Consensus        79 iiClecGk-~~K~LkRHL~t~hgLtp~eYR~kwGL  112 (149)
                      -|+..||= ....+.|.-...+|+||.+||.....
T Consensus        19 ~IA~~~Gf~~~~~F~r~Fk~~~G~tP~~yRk~~~~   53 (65)
T d1d5ya2          19 DIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW   53 (65)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHSSCHHHHHHCSSE
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCC
T ss_conf             99999789987999999998889099999858254


No 4  
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=68.10  E-value=2.3  Score=21.04  Aligned_cols=37  Identities=27%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             CCEEECCCCHHHHH---HHHHHHHHCCCCHHHHHHHCCCC
Q ss_conf             84597436100025---89998674399989999972737
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKTHHNMTPDEYRIKWNLA  113 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t~hgLtp~eYR~kwGLp  113 (149)
                      ..++||-|-+.|.+   +-.|....|+.+-.+.+.++||-
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LD   53 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLE   53 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCC
T ss_pred             CCCEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf             0131324388257999999998876189999999871897


No 5  
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=60.67  E-value=0.97  Score=23.46  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             EECCCCH-HHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf             9743610-0025899986743999899999727
Q gi|254780783|r   80 YCLEDGM-QFKSLKRHLKTHHNMTPDEYRIKWN  111 (149)
Q Consensus        80 iClecGk-~~K~LkRHL~t~hgLtp~eYR~kwG  111 (149)
                      |+..||= ....+.|.....+|+||.+||....
T Consensus        20 IA~~~Gf~~~~~F~r~Fk~~~g~tP~~~R~~~~   52 (62)
T d1bl0a2          20 LAERYGFESQQTLTRTFKNYFDVPPHKYRMTNM   52 (62)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHSSCHHHHHTCSS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             999987998899999999888909999997636


No 6  
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.82  E-value=1.5  Score=22.33  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=19.2

Q ss_pred             CEEECCCCHHHHHH---HHHHHHHCCC
Q ss_conf             45974361000258---9998674399
Q gi|254780783|r   78 CLYCLEDGMQFKSL---KRHLKTHHNM  101 (149)
Q Consensus        78 ~iiClecGk~~K~L---kRHL~t~hgL  101 (149)
                      -.+|-.|||+.|+|   |-|+.+-|+-
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CEECHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             101303778876303834788503667


No 7  
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.97  E-value=3.4  Score=20.00  Aligned_cols=19  Identities=26%  Similarity=0.658  Sum_probs=17.1

Q ss_pred             CCCCHHHHHHHCCCCCCCC
Q ss_conf             3999899999727379883
Q gi|254780783|r   99 HNMTPDEYRIKWNLASDYP  117 (149)
Q Consensus        99 hgLtp~eYR~kwGLp~dyP  117 (149)
                      -|.||+|-|+.||++.|+.
T Consensus        44 kgkt~eeiR~~f~I~~D~t   62 (70)
T d1nexa1          44 RGRSPEEIRRTFNIVNDFT   62 (70)
T ss_dssp             TTCCHHHHHHHHTCCCCCC
T ss_pred             CCCCHHHHHHHHCCCCCCC
T ss_conf             2599999999959999999


No 8  
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.00  E-value=3  Score=20.28  Aligned_cols=23  Identities=22%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             CEEECCCCHHHH---HHHHHHHHHCC
Q ss_conf             459743610002---58999867439
Q gi|254780783|r   78 CLYCLEDGMQFK---SLKRHLKTHHN  100 (149)
Q Consensus        78 ~iiClecGk~~K---~LkRHL~t~hg  100 (149)
                      --.|=+|||.|.   .|++|++..|+
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CEECCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             97689776411420899977605548


No 9  
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.43  E-value=3.1  Score=20.19  Aligned_cols=24  Identities=25%  Similarity=0.366  Sum_probs=18.2

Q ss_pred             CCEEECCCCHHHH---HHHHHHHHHCC
Q ss_conf             8459743610002---58999867439
Q gi|254780783|r   77 GCLYCLEDGMQFK---SLKRHLKTHHN  100 (149)
Q Consensus        77 d~iiClecGk~~K---~LkRHL~t~hg  100 (149)
                      .--.|-+|||.|.   .|++|.++.|+
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCEECCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             797889987875877688886720479


No 10 
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.25  E-value=4  Score=19.50  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             CCCEEECCCCHHHHH---HHHHHHHHCCCCH
Q ss_conf             884597436100025---8999867439998
Q gi|254780783|r   76 NGCLYCLEDGMQFKS---LKRHLKTHHNMTP  103 (149)
Q Consensus        76 ~d~iiClecGk~~K~---LkRHL~t~hgLtp  103 (149)
                      ...+-|-+|||-|+-   |.||-++.-|-.|
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             1211289998999999988762325577889


No 11 
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.05  E-value=9.8  Score=17.03  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=45.3

Q ss_pred             HHHHHHHHHC--CCCCHHHHHHHH---------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHCCCCCEEECCCC
Q ss_conf             9999999736--888889999999---------99999999502666665557854589985-73651388845974361
Q gi|254780783|r   18 VDIVAAYVSN--HVVPMADIGSLI---------TDVHSALQRVVSRAPCQDNVQPERLKPAV-PIRKSIENGCLYCLEDG   85 (149)
Q Consensus        18 a~IV~A~vs~--n~v~~~el~~lI---------~~v~~aL~~l~~~~~~~~~~~~~~~~PAv-~i~kSi~~d~iiClecG   85 (149)
                      ..|..+....  ..++++||-..+         .+||.+|..|....-..........  .. .....=..++++|-.||
T Consensus        19 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~~~~~~--~~y~~~~~~~h~H~~C~~Cg   96 (134)
T d1mzba_          19 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGH--AVFELADSGHHDHMVCVDTG   96 (134)
T ss_dssp             HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSS--CEEEESSSCCCEEEEETTTC
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEECCCC--EEEEECCCCCCCEEEECCCC
T ss_conf             9999999848999999999999999738884479999999999741378888606871--59973588545179999999


Q ss_pred             HHH-------HHHHHHHHHHCCCCHH
Q ss_conf             000-------2589998674399989
Q gi|254780783|r   86 MQF-------KSLKRHLKTHHNMTPD  104 (149)
Q Consensus        86 k~~-------K~LkRHL~t~hgLtp~  104 (149)
                      +-.       ..+...+...+|.+..
T Consensus        97 ~i~~~~~~~~~~~~~~i~~~~gf~i~  122 (134)
T d1mzba_          97 EVIEFMDAEIEKRQKEIVRERGFELV  122 (134)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCC
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf             99982553289999987887699895


No 12 
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.61  E-value=4.5  Score=19.17  Aligned_cols=20  Identities=40%  Similarity=0.663  Sum_probs=15.8

Q ss_pred             EECCCCHHHH---HHHHHHHHHC
Q ss_conf             9743610002---5899986743
Q gi|254780783|r   80 YCLEDGMQFK---SLKRHLKTHH   99 (149)
Q Consensus        80 iClecGk~~K---~LkRHL~t~h   99 (149)
                      .|-+|||.|.   .|++|.++.-
T Consensus         4 ~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           4 ACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             ECCCCCCEECCHHHHHHHCCCCC
T ss_conf             89908886043578313437647


No 13 
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.57  E-value=4.5  Score=19.17  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=15.8

Q ss_pred             EEECCCCHHHHH---HHHHHHHH
Q ss_conf             597436100025---89998674
Q gi|254780783|r   79 LYCLEDGMQFKS---LKRHLKTH   98 (149)
Q Consensus        79 iiClecGk~~K~---LkRHL~t~   98 (149)
                      -.|-+|||.|..   |++|.++.
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCCCCCCC
T ss_conf             00997869744620051419880


No 14 
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=40.60  E-value=4.7  Score=19.06  Aligned_cols=19  Identities=37%  Similarity=0.597  Sum_probs=15.2

Q ss_pred             EECCCCHHHHH---HHHHHHHH
Q ss_conf             97436100025---89998674
Q gi|254780783|r   80 YCLEDGMQFKS---LKRHLKTH   98 (149)
Q Consensus        80 iClecGk~~K~---LkRHL~t~   98 (149)
                      .|=+|||.|..   |+||.++.
T Consensus         4 ~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           4 VCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCTTTCCCBSCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCHHCCCCCCCC
T ss_conf             9989989988704704300752


No 15 
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.18  E-value=5.9  Score=18.43  Aligned_cols=25  Identities=44%  Similarity=0.399  Sum_probs=19.2

Q ss_pred             CCEEECCCCHHHHHH---HHHHHHHCCC
Q ss_conf             845974361000258---9998674399
Q gi|254780783|r   77 GCLYCLEDGMQFKSL---KRHLKTHHNM  101 (149)
Q Consensus        77 d~iiClecGk~~K~L---kRHL~t~hgL  101 (149)
                      .+++||||-+.||+-   =||--..|+-
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHEECCC
T ss_conf             7111999999987778887765212145


No 16 
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.57  E-value=4.7  Score=19.08  Aligned_cols=18  Identities=39%  Similarity=0.648  Sum_probs=13.5

Q ss_pred             EECCCCHHHH---HHHHHHHH
Q ss_conf             9743610002---58999867
Q gi|254780783|r   80 YCLEDGMQFK---SLKRHLKT   97 (149)
Q Consensus        80 iClecGk~~K---~LkRHL~t   97 (149)
                      .|-||||.|.   .|.+|.+.
T Consensus         4 ~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           4 KCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             ECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCCCCCCCC
T ss_conf             488985823667363668567


No 17 
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.19  E-value=5.4  Score=18.69  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=17.4

Q ss_pred             CCEEECCCCHHHHH---HHHHHHHHCC
Q ss_conf             84597436100025---8999867439
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKTHHN  100 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t~hg  100 (149)
                      .--.|-+|||.|..   |++|.+..|-
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht   30 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHT   30 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf             880199888883876786132817608


No 18 
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=36.15  E-value=6  Score=18.39  Aligned_cols=12  Identities=17%  Similarity=0.423  Sum_probs=9.8

Q ss_pred             HHHHHHCCCCCC
Q ss_conf             999997273798
Q gi|254780783|r  104 DEYRIKWNLASD  115 (149)
Q Consensus       104 ~eYR~kwGLp~d  115 (149)
                      .+|++|||+|-=
T Consensus       108 ~~Y~~kFGfpFI  119 (165)
T d2o70a1         108 SEYKERFGFPFV  119 (165)
T ss_dssp             HHHHHHHSSCCC
T ss_pred             HHHHHHCCCEEE
T ss_conf             999997499369


No 19 
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.94  E-value=7.2  Score=17.90  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=16.4

Q ss_pred             CCEEECCCCHHHHH---HHHHHHHH
Q ss_conf             84597436100025---89998674
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKTH   98 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t~   98 (149)
                      .--.|-+|||.|..   |++|.++.
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CCEECCCCCCEECCHHHHHHHCCCC
T ss_conf             8863899988728667867666506


No 20 
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.41  E-value=6.4  Score=18.19  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=17.3

Q ss_pred             CCEEECCCCHHHHH---HHHHHHHHCC
Q ss_conf             84597436100025---8999867439
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKTHHN  100 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t~hg  100 (149)
                      .--.|-+|||.|..   |++|++. |-
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~-Ht   31 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKV-HT   31 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG-GT
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCC-CC
T ss_conf             460288788965686999987110-47


No 21 
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.68  E-value=6.1  Score=18.35  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=15.9

Q ss_pred             CCEEECCCCHHHHH---HHHHHHH
Q ss_conf             84597436100025---8999867
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKT   97 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t   97 (149)
                      .--.|-+|||.|+.   |++|.++
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCEECCCCCCEEECHHHHHHHCCC
T ss_conf             897258878605077897875853


No 22 
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.20  E-value=8.5  Score=17.41  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=15.9

Q ss_pred             CCEEECCCCHHHHH---HHHHHHH
Q ss_conf             84597436100025---8999867
Q gi|254780783|r   77 GCLYCLEDGMQFKS---LKRHLKT   97 (149)
Q Consensus        77 d~iiClecGk~~K~---LkRHL~t   97 (149)
                      .--.|-+|||.|..   |++|.++
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCEEECCCCCEECCHHHHHHHHHC
T ss_conf             685759999892488999988760


No 23 
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=32.18  E-value=7.6  Score=17.73  Aligned_cols=13  Identities=15%  Similarity=0.197  Sum_probs=10.3

Q ss_pred             HHHHHHCCCCCCC
Q ss_conf             9999972737988
Q gi|254780783|r  104 DEYRIKWNLASDY  116 (149)
Q Consensus       104 ~eYR~kwGLp~dy  116 (149)
                      .+|++|||+|-=.
T Consensus       105 ~~Y~~kFGfpFIi  117 (165)
T d2o8ia1         105 SAYTEKFGFPFII  117 (165)
T ss_dssp             HHHHHHHSSCCCC
T ss_pred             HHHHHHCCCEEEE
T ss_conf             9999974992687


No 24 
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.16  E-value=7.7  Score=17.70  Aligned_cols=22  Identities=36%  Similarity=0.715  Sum_probs=15.7

Q ss_pred             EEECCCCHHH---HHHHHHHHHHCC
Q ss_conf             5974361000---258999867439
Q gi|254780783|r   79 LYCLEDGMQF---KSLKRHLKTHHN  100 (149)
Q Consensus        79 iiClecGk~~---K~LkRHL~t~hg  100 (149)
                      -||-+||...   -+|+.|+++.-|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             4600217643787999999987248


No 25 
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.90  E-value=8.8  Score=17.33  Aligned_cols=12  Identities=17%  Similarity=0.127  Sum_probs=9.9

Q ss_pred             HHHHHHCCCCCC
Q ss_conf             999997273798
Q gi|254780783|r  104 DEYRIKWNLASD  115 (149)
Q Consensus       104 ~eYR~kwGLp~d  115 (149)
                      .+|+.|||+|-=
T Consensus        96 ~~Y~~kFGfpFI  107 (155)
T d2q37a1          96 VLYKKKFGFIFI  107 (155)
T ss_dssp             HHHHHHHSSCCC
T ss_pred             HHHHHHCCCEEE
T ss_conf             999998599468


No 26 
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.53  E-value=9.4  Score=17.15  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=15.8

Q ss_pred             EECC--CCHHH---HHHHHHHHHHCC
Q ss_conf             9743--61000---258999867439
Q gi|254780783|r   80 YCLE--DGMQF---KSLKRHLKTHHN  100 (149)
Q Consensus        80 iCle--cGk~~---K~LkRHL~t~hg  100 (149)
                      +|-.  |+|.|   .+|++|..+.||
T Consensus         4 ~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           4 VCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             24369988665788999998785179


No 27 
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.15  E-value=11  Score=16.58  Aligned_cols=11  Identities=36%  Similarity=0.452  Sum_probs=5.3

Q ss_pred             EEECCCCHHHH
Q ss_conf             59743610002
Q gi|254780783|r   79 LYCLEDGMQFK   89 (149)
Q Consensus        79 iiClecGk~~K   89 (149)
                      -.|-+||+.|.
T Consensus        31 y~C~~C~k~F~   41 (53)
T d2csha1          31 YGCGVCGKKFK   41 (53)
T ss_dssp             EECTTTSCEES
T ss_pred             CCCCCCCCEEC
T ss_conf             70797598925


No 28 
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=27.55  E-value=11  Score=16.66  Aligned_cols=27  Identities=30%  Similarity=0.541  Sum_probs=21.8

Q ss_pred             CEEECCCCH--HHHHHHHHHHHHCCCCHHH
Q ss_conf             459743610--0025899986743999899
Q gi|254780783|r   78 CLYCLEDGM--QFKSLKRHLKTHHNMTPDE  105 (149)
Q Consensus        78 ~iiClecGk--~~K~LkRHL~t~hgLtp~e  105 (149)
                      +--|-.|||  -.-+|.+||+ .||..-.|
T Consensus       146 FYKCe~CgKYvDie~~~~H~k-~HG~~~~e  174 (218)
T d2czra1         146 FYKCEECGKYVDIENLEAHLR-EHGIKLHE  174 (218)
T ss_dssp             EEECTTTCCEEEGGGHHHHHH-TTTCCGGG
T ss_pred             EEEHHHCCCEECHHHHHHHHH-HCCCCHHH
T ss_conf             865254076413899999998-70852544


No 29 
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69  E-value=17  Score=15.42  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             CCCEEECCCCHHHH---HHHHHHHHHCCCC
Q ss_conf             88459743610002---5899986743999
Q gi|254780783|r   76 NGCLYCLEDGMQFK---SLKRHLKTHHNMT  102 (149)
Q Consensus        76 ~d~iiClecGk~~K---~LkRHL~t~hgLt  102 (149)
                      |-..+|-.|||.|.   ++.||--..-|++
T Consensus         2 p~afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           2 PAAFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             CCEEEECCCCCCHHCCHHHHHHHHHCCCCC
T ss_conf             822333003441100037877756067987


No 30 
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.77  E-value=12  Score=16.48  Aligned_cols=31  Identities=16%  Similarity=0.086  Sum_probs=20.4

Q ss_pred             CCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf             8884597436100025899986743999899999727
Q gi|254780783|r   75 ENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWN  111 (149)
Q Consensus        75 ~~d~iiClecGk~~K~LkRHL~t~hgLtp~eYR~kwG  111 (149)
                      .+|.|.|+-||+.++--      ..+=+|-+--+||.
T Consensus        47 ~~D~v~Cf~C~~~l~~W------e~~DdP~~eH~~~~   77 (137)
T d2qfaa1          47 EPDLAQCFFCFKELEGW------EPDDDPIEEHKKHS   77 (137)
T ss_dssp             BTTCEEETTTCCEECCC------CTTCCHHHHHHHHC
T ss_pred             CCCEEEECCCCCCCCCC------CCCCCHHHHHHHHC
T ss_conf             99868966557783788------99999999999988


No 31 
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.85  E-value=25  Score=14.47  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=24.5

Q ss_pred             CEEECCCCHHHHHHHHHHHHHCC----------CCHHHHHHHCCCCCCCCCCCH-HHHHHHH
Q ss_conf             45974361000258999867439----------998999997273798832299-9999999
Q gi|254780783|r   78 CLYCLEDGMQFKSLKRHLKTHHN----------MTPDEYRIKWNLASDYPMVSR-EYATTRS  128 (149)
Q Consensus        78 ~iiClecGk~~K~LkRHL~t~hg----------Ltp~eYR~kwGLp~dyPlvAp-~Ys~~Rs  128 (149)
                      .+|||.|--|.|.-.-=..+ -|          --|++...-+.++..+--+.. ++..-+.
T Consensus       442 p~VvLATAHPaKFpdaV~~A-lg~~~~~~~~~~~LP~~L~~L~~~~e~~~~i~n~d~~~vk~  502 (511)
T d1kl7a_         442 QYISLSTAHPAKFADAVNNA-LSGFSNYSFEKDVLPEELKKLSTLKKKLKFIERADVELVKN  502 (511)
T ss_dssp             EEEEEECBCGGGGHHHHHHH-HTTCSSCCHHHHTSCHHHHSGGGSCCCCCEECSCCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHHH
T ss_conf             68999576845469999998-57776555565567789998863771002225457999999


No 32 
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=21.72  E-value=24  Score=14.54  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             7436100025899986743999899999
Q gi|254780783|r   81 CLEDGMQFKSLKRHLKTHHNMTPDEYRI  108 (149)
Q Consensus        81 ClecGk~~K~LkRHL~t~hgLtp~eYR~  108 (149)
                      |-.+|-.-..|.|......|+||-+|-.
T Consensus        26 A~~~~~s~~~l~r~Fk~~~g~tp~~Yl~   53 (54)
T d1bl0a1          26 SERSGYSKWHLQRMFKKETGHSLGQYIR   53 (54)
T ss_dssp             HHHSSSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf             9998939999999999999919999961


No 33 
>d1dtdb_ g.30.1.1 (B:) Carboxypeptidase inhibitor {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=20.21  E-value=16  Score=15.74  Aligned_cols=13  Identities=8%  Similarity=0.059  Sum_probs=10.6

Q ss_pred             CCCCCEEECCCCH
Q ss_conf             3888459743610
Q gi|254780783|r   74 IENGCLYCLEDGM   86 (149)
Q Consensus        74 i~~d~iiClecGk   86 (149)
                      .+||.+.||+|-.
T Consensus         7 yqpdqvccficrg   19 (61)
T d1dtdb_           7 YQPDQVCCFICRG   19 (61)
T ss_dssp             ECSSCEEEEEEES
T ss_pred             ECCCCEEEEEECC
T ss_conf             2788379999558


Done!