Query gi|254780783|ref|YP_003065196.1| transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 149 No_of_seqs 114 out of 407 Neff 4.8 Searched_HMMs 13730 Date Wed Jun 1 06:47:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780783.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1d4ua2 g.39.1.5 (A:1-36) DNA 87.4 0.076 5.5E-06 30.5 0.8 16 74-89 1-16 (36) 2 d1ubdc2 g.37.1.1 (C:323-350) Y 80.1 0.29 2.1E-05 26.8 1.3 19 79-97 3-24 (28) 3 d1d5ya2 a.4.1.8 (A:57-121) Rob 72.9 0.52 3.8E-05 25.2 0.9 34 79-112 19-53 (65) 4 d1wira_ g.37.1.5 (A:) Protein 68.1 2.3 0.00017 21.0 3.4 37 77-113 14-53 (121) 5 d1bl0a2 a.4.1.8 (A:63-124) Mar 60.7 0.97 7.1E-05 23.5 0.3 32 80-111 20-52 (62) 6 d2ctda2 g.37.1.1 (A:61-90) Zin 59.8 1.5 0.00011 22.3 1.1 24 78-101 2-28 (30) 7 d1nexa1 a.157.1.1 (A:116-185) 54.0 3.4 0.00024 20.0 2.2 19 99-117 44-62 (70) 8 d2ct1a2 g.37.1.1 (A:8-43) Tran 51.0 3 0.00022 20.3 1.6 23 78-100 8-33 (36) 9 d1x6ha2 g.37.1.1 (A:8-43) Tran 50.4 3.1 0.00023 20.2 1.6 24 77-100 7-33 (36) 10 d2epra1 g.37.1.1 (A:350-384) P 49.2 4 0.00029 19.5 2.0 28 76-103 3-33 (35) 11 d1mzba_ a.4.5.42 (A:) Ferric u 46.1 9.8 0.00071 17.0 4.3 85 18-104 19-122 (134) 12 d1sp1a_ g.37.1.1 (A:) Transcri 43.6 4.5 0.00033 19.2 1.5 20 80-99 4-26 (29) 13 d1a1ia2 g.37.1.1 (A:132-159) Z 42.6 4.5 0.00033 19.2 1.4 20 79-98 4-26 (28) 14 d2adra1 g.37.1.1 (A:102-130) A 40.6 4.7 0.00034 19.1 1.2 19 80-98 4-25 (29) 15 d1wjpa3 g.37.1.1 (A:67-107) Zi 40.2 5.9 0.00043 18.4 1.7 25 77-101 2-29 (41) 16 d1x6ea2 g.37.1.1 (A:41-66) Zin 38.6 4.7 0.00034 19.1 0.9 18 80-97 4-24 (26) 17 d2epsa1 g.37.1.1 (A:408-446) P 38.2 5.4 0.00039 18.7 1.2 24 77-100 4-30 (39) 18 d2o70a1 a.288.1.1 (A:2-166) OH 36.2 6 0.00044 18.4 1.2 12 104-115 108-119 (165) 19 d1x6ea1 g.37.1.1 (A:8-40) Zinc 34.9 7.2 0.00052 17.9 1.4 22 77-98 6-30 (33) 20 d1srka_ g.37.1.1 (A:) Zinc fin 34.4 6.4 0.00047 18.2 1.1 23 77-100 6-31 (35) 21 d2cota2 g.37.1.1 (A:7-44) Zinc 33.7 6.1 0.00044 18.4 0.9 21 77-97 11-34 (38) 22 d1p7aa_ g.37.1.1 (A:) Kruppel- 32.2 8.5 0.00062 17.4 1.4 21 77-97 10-33 (37) 23 d2o8ia1 a.288.1.1 (A:1-165) Hy 32.2 7.6 0.00055 17.7 1.2 13 104-116 105-117 (165) 24 d1bboa1 g.37.1.1 (A:1-28) Enha 32.2 7.7 0.00056 17.7 1.2 22 79-100 2-26 (28) 25 d2q37a1 a.288.1.1 (A:6-160) OH 29.9 8.8 0.00064 17.3 1.2 12 104-115 96-107 (155) 26 d2glia5 g.37.1.1 (A:229-257) F 29.5 9.4 0.00068 17.2 1.3 21 80-100 4-29 (29) 27 d2csha1 g.37.1.1 (A:8-60) Zinc 28.1 11 0.00084 16.6 1.5 11 79-89 31-41 (53) 28 d2czra1 c.52.4.1 (A:1-218) TBP 27.5 11 0.00081 16.7 1.4 27 78-105 146-174 (218) 29 d1x6ha1 g.37.1.1 (A:44-80) Tra 26.7 17 0.0013 15.4 2.2 27 76-102 2-31 (37) 30 d2qfaa1 g.52.1.1 (A:5-141) Ant 23.8 12 0.00087 16.5 0.9 31 75-111 47-77 (137) 31 d1kl7a_ c.79.1.1 (A:) Threonin 21.9 25 0.0018 14.5 2.8 50 78-128 442-502 (511) 32 d1bl0a1 a.4.1.8 (A:9-62) MarA 21.7 24 0.0017 14.5 2.2 28 81-108 26-53 (54) 33 d1dtdb_ g.30.1.1 (B:) Carboxyp 20.2 16 0.0011 15.7 0.9 13 74-86 7-19 (61) No 1 >d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Probab=87.39 E-value=0.076 Score=30.54 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.6 Q ss_pred CCCCCEEECCCCHHHH Q ss_conf 3888459743610002 Q gi|254780783|r 74 IENGCLYCLEDGMQFK 89 (149) Q Consensus 74 i~~d~iiClecGk~~K 89 (149) +..|+.+|+|||++|- T Consensus 1 ~e~dy~~C~eCg~~F~ 16 (36) T d1d4ua2 1 MEFDYVICEECGKEFM 16 (36) T ss_dssp CCCCCEECTTTCCEES T ss_pred CCCCHHHHHHHCCHHH T ss_conf 9851789988573778 No 2 >d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=80.14 E-value=0.29 Score=26.78 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=15.6 Q ss_pred EEECCCCHHHH---HHHHHHHH Q ss_conf 59743610002---58999867 Q gi|254780783|r 79 LYCLEDGMQFK---SLKRHLKT 97 (149) Q Consensus 79 iiClecGk~~K---~LkRHL~t 97 (149) -+|-||||.|. -||||.+- T Consensus 3 hvc~ecgkaf~essklkrh~lv 24 (28) T d1ubdc2 3 HVCAECGKAFVESSKLKRHQLV 24 (28) T ss_dssp EECTTTCCEESSHHHHHHHGGG T ss_pred CHHHHHHHHHHHHHHHHHHHHC T ss_conf 1398886999989887777510 No 3 >d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=72.89 E-value=0.52 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.3 Q ss_pred EEECCCCH-HHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf 59743610-00258999867439998999997273 Q gi|254780783|r 79 LYCLEDGM-QFKSLKRHLKTHHNMTPDEYRIKWNL 112 (149) Q Consensus 79 iiClecGk-~~K~LkRHL~t~hgLtp~eYR~kwGL 112 (149) -|+..||= ....+.|.-...+|+||.+||..... T Consensus 19 ~IA~~~Gf~~~~~F~r~Fk~~~G~tP~~yRk~~~~ 53 (65) T d1d5ya2 19 DIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 53 (65) T ss_dssp HHHHHTTCSCHHHHHHHHHHHHSSCHHHHHHCSSE T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCC T ss_conf 99999789987999999998889099999858254 No 4 >d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=68.10 E-value=2.3 Score=21.04 Aligned_cols=37 Identities=27% Similarity=0.207 Sum_probs=32.1 Q ss_pred CCEEECCCCHHHHH---HHHHHHHHCCCCHHHHHHHCCCC Q ss_conf 84597436100025---89998674399989999972737 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKTHHNMTPDEYRIKWNLA 113 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t~hgLtp~eYR~kwGLp 113 (149) ..++||-|-+.|.+ +-.|....|+.+-.+.+.++||- T Consensus 14 ~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LD 53 (121) T d1wira_ 14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLE 53 (121) T ss_dssp CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCC T ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC T ss_conf 0131324388257999999998876189999999871897 No 5 >d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]} Probab=60.67 E-value=0.97 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.1 Q ss_pred EECCCCH-HHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 9743610-0025899986743999899999727 Q gi|254780783|r 80 YCLEDGM-QFKSLKRHLKTHHNMTPDEYRIKWN 111 (149) Q Consensus 80 iClecGk-~~K~LkRHL~t~hgLtp~eYR~kwG 111 (149) |+..||= ....+.|.....+|+||.+||.... T Consensus 20 IA~~~Gf~~~~~F~r~Fk~~~g~tP~~~R~~~~ 52 (62) T d1bl0a2 20 LAERYGFESQQTLTRTFKNYFDVPPHKYRMTNM 52 (62) T ss_dssp HHHHTTCSCHHHHHHHHHHHHSSCHHHHHTCSS T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCC T ss_conf 999987998899999999888909999997636 No 6 >d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]} Probab=59.82 E-value=1.5 Score=22.33 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.2 Q ss_pred CEEECCCCHHHHHH---HHHHHHHCCC Q ss_conf 45974361000258---9998674399 Q gi|254780783|r 78 CLYCLEDGMQFKSL---KRHLKTHHNM 101 (149) Q Consensus 78 ~iiClecGk~~K~L---kRHL~t~hgL 101 (149) -.+|-.|||+.|+| |-|+.+-|+- T Consensus 2 ~ftc~hcgkqlks~~gmkyhvmadhn~ 28 (30) T d2ctda2 2 MFTCHHCGKQLRSLAGMKYHVMANHNS 28 (30) T ss_dssp CCCCSSSCCCCSSHHHHHHHHHHHTCC T ss_pred CEECHHHHHHHHHCCCCEEEEEECCCC T ss_conf 101303778876303834788503667 No 7 >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=53.97 E-value=3.4 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=17.1 Q ss_pred CCCCHHHHHHHCCCCCCCC Q ss_conf 3999899999727379883 Q gi|254780783|r 99 HNMTPDEYRIKWNLASDYP 117 (149) Q Consensus 99 hgLtp~eYR~kwGLp~dyP 117 (149) -|.||+|-|+.||++.|+. T Consensus 44 kgkt~eeiR~~f~I~~D~t 62 (70) T d1nexa1 44 RGRSPEEIRRTFNIVNDFT 62 (70) T ss_dssp TTCCHHHHHHHHTCCCCCC T ss_pred CCCCHHHHHHHHCCCCCCC T ss_conf 2599999999959999999 No 8 >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=51.00 E-value=3 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.376 Sum_probs=18.6 Q ss_pred CEEECCCCHHHH---HHHHHHHHHCC Q ss_conf 459743610002---58999867439 Q gi|254780783|r 78 CLYCLEDGMQFK---SLKRHLKTHHN 100 (149) Q Consensus 78 ~iiClecGk~~K---~LkRHL~t~hg 100 (149) --.|=+|||.|. .|++|++..|+ T Consensus 8 P~~C~~C~k~F~~~~~L~~H~~~~H~ 33 (36) T d2ct1a2 8 PYECYICHARFTQSGTMKMHILQKHT 33 (36) T ss_dssp SEECTTTCCEESCHHHHHHHHHHHSS T ss_pred CEECCCCCCCCCCHHHHHHHCCCCCC T ss_conf 97689776411420899977605548 No 9 >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=50.43 E-value=3.1 Score=20.19 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=18.2 Q ss_pred CCEEECCCCHHHH---HHHHHHHHHCC Q ss_conf 8459743610002---58999867439 Q gi|254780783|r 77 GCLYCLEDGMQFK---SLKRHLKTHHN 100 (149) Q Consensus 77 d~iiClecGk~~K---~LkRHL~t~hg 100 (149) .--.|-+|||.|. .|++|.++.|+ T Consensus 7 kPy~C~~C~k~F~~~~~L~~H~r~H~~ 33 (36) T d1x6ha2 7 KPYACSHCDKTFRQKQLLDMHFKRYHD 33 (36) T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTC T ss_pred CCEECCCCCCCCCCHHHHHHHCCCCCC T ss_conf 797889987875877688886720479 No 10 >d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Probab=49.25 E-value=4 Score=19.50 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=19.7 Q ss_pred CCCEEECCCCHHHHH---HHHHHHHHCCCCH Q ss_conf 884597436100025---8999867439998 Q gi|254780783|r 76 NGCLYCLEDGMQFKS---LKRHLKTHHNMTP 103 (149) Q Consensus 76 ~d~iiClecGk~~K~---LkRHL~t~hgLtp 103 (149) ...+-|-+|||-|+- |.||-++.-|-.| T Consensus 3 rk~~~ce~cgk~frdvyhlnrhklshs~ekp 33 (35) T d2epra1 3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKP 33 (35) T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 1211289998999999988762325577889 No 11 >d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]} Probab=46.05 E-value=9.8 Score=17.03 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=45.3 Q ss_pred HHHHHHHHHC--CCCCHHHHHHHH---------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHHHCCCCCEEECCCC Q ss_conf 9999999736--888889999999---------99999999502666665557854589985-73651388845974361 Q gi|254780783|r 18 VDIVAAYVSN--HVVPMADIGSLI---------TDVHSALQRVVSRAPCQDNVQPERLKPAV-PIRKSIENGCLYCLEDG 85 (149) Q Consensus 18 a~IV~A~vs~--n~v~~~el~~lI---------~~v~~aL~~l~~~~~~~~~~~~~~~~PAv-~i~kSi~~d~iiClecG 85 (149) ..|..+.... ..++++||-..+ .+||.+|..|....-.......... .. .....=..++++|-.|| T Consensus 19 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~~~~~~--~~y~~~~~~~h~H~~C~~Cg 96 (134) T d1mzba_ 19 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGH--AVFELADSGHHDHMVCVDTG 96 (134) T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSS--CEEEESSSCCCEEEEETTTC T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEECCCC--EEEEECCCCCCCEEEECCCC T ss_conf 9999999848999999999999999738884479999999999741378888606871--59973588545179999999 Q ss_pred HHH-------HHHHHHHHHHCCCCHH Q ss_conf 000-------2589998674399989 Q gi|254780783|r 86 MQF-------KSLKRHLKTHHNMTPD 104 (149) Q Consensus 86 k~~-------K~LkRHL~t~hgLtp~ 104 (149) +-. ..+...+...+|.+.. T Consensus 97 ~i~~~~~~~~~~~~~~i~~~~gf~i~ 122 (134) T d1mzba_ 97 EVIEFMDAEIEKRQKEIVRERGFELV 122 (134) T ss_dssp CEEEECCHHHHHHHHHHHHTTTCCCC T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEE T ss_conf 99982553289999987887699895 No 12 >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=43.61 E-value=4.5 Score=19.17 Aligned_cols=20 Identities=40% Similarity=0.663 Sum_probs=15.8 Q ss_pred EECCCCHHHH---HHHHHHHHHC Q ss_conf 9743610002---5899986743 Q gi|254780783|r 80 YCLEDGMQFK---SLKRHLKTHH 99 (149) Q Consensus 80 iClecGk~~K---~LkRHL~t~h 99 (149) .|-+|||.|. .|++|.++.- T Consensus 4 ~C~~C~k~F~~~s~L~~H~r~Ht 26 (29) T d1sp1a_ 4 ACPECPKRFMRSDHLSKHIKTHQ 26 (29) T ss_dssp CCTTTTCCCSCSHHHHHHHHGGG T ss_pred ECCCCCCEECCHHHHHHHCCCCC T ss_conf 89908886043578313437647 No 13 >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=42.57 E-value=4.5 Score=19.17 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=15.8 Q ss_pred EEECCCCHHHHH---HHHHHHHH Q ss_conf 597436100025---89998674 Q gi|254780783|r 79 LYCLEDGMQFKS---LKRHLKTH 98 (149) Q Consensus 79 iiClecGk~~K~---LkRHL~t~ 98 (149) -.|-+|||.|.. |++|.++. T Consensus 4 y~C~~C~k~F~~~~~L~~H~r~H 26 (28) T d1a1ia2 4 FQCRICMRNFSRSDHLTTHIRTH 26 (28) T ss_dssp EECTTTCCEESCHHHHHHHHHHH T ss_pred CCCCCCCCEECCCCCCCCCCCCC T ss_conf 00997869744620051419880 No 14 >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Probab=40.60 E-value=4.7 Score=19.06 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.2 Q ss_pred EECCCCHHHHH---HHHHHHHH Q ss_conf 97436100025---89998674 Q gi|254780783|r 80 YCLEDGMQFKS---LKRHLKTH 98 (149) Q Consensus 80 iClecGk~~K~---LkRHL~t~ 98 (149) .|=+|||.|.. |+||.++. T Consensus 4 ~C~~C~k~F~~~~~L~~H~r~H 25 (29) T d2adra1 4 VCEVCTRAFARQEHLKRHYRSH 25 (29) T ss_dssp CCTTTCCCBSCHHHHHHHHHTT T ss_pred CCCCCCCCCCCCHHCCCCCCCC T ss_conf 9989989988704704300752 No 15 >d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]} Probab=40.18 E-value=5.9 Score=18.43 Aligned_cols=25 Identities=44% Similarity=0.399 Sum_probs=19.2 Q ss_pred CCEEECCCCHHHHHH---HHHHHHHCCC Q ss_conf 845974361000258---9998674399 Q gi|254780783|r 77 GCLYCLEDGMQFKSL---KRHLKTHHNM 101 (149) Q Consensus 77 d~iiClecGk~~K~L---kRHL~t~hgL 101 (149) .+++||||-+.||+- =||--..|+- T Consensus 2 kkltclecmrtfkssfsiwrhqvevhnq 29 (41) T d1wjpa3 2 KKLTCLECMRTFKSSFSIWRHQVEVHNQ 29 (41) T ss_dssp GGGEEGGGTEECSSHHHHHHHHHHTSCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHEECCC T ss_conf 7111999999987778887765212145 No 16 >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=38.57 E-value=4.7 Score=19.08 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=13.5 Q ss_pred EECCCCHHHH---HHHHHHHH Q ss_conf 9743610002---58999867 Q gi|254780783|r 80 YCLEDGMQFK---SLKRHLKT 97 (149) Q Consensus 80 iClecGk~~K---~LkRHL~t 97 (149) .|-||||.|. .|.+|.+. T Consensus 4 ~C~eCgK~F~~~s~L~~Hqri 24 (26) T d1x6ea2 4 KCLECGKAFSQNSGLINHQRI 24 (26) T ss_dssp ECSSSCCEESSHHHHHHHHHH T ss_pred CCCCCCCEECCCCCCCCCCCC T ss_conf 488985823667363668567 No 17 >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Probab=38.19 E-value=5.4 Score=18.69 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=17.4 Q ss_pred CCEEECCCCHHHHH---HHHHHHHHCC Q ss_conf 84597436100025---8999867439 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKTHHN 100 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t~hg 100 (149) .--.|-+|||.|.. |++|.+..|- T Consensus 4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht 30 (39) T d2epsa1 4 KPYICQSCGKGFSRPDHLNGHIKQVHT 30 (39) T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSC T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCC T ss_conf 880199888883876786132817608 No 18 >d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Probab=36.15 E-value=6 Score=18.39 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=9.8 Q ss_pred HHHHHHCCCCCC Q ss_conf 999997273798 Q gi|254780783|r 104 DEYRIKWNLASD 115 (149) Q Consensus 104 ~eYR~kwGLp~d 115 (149) .+|++|||+|-= T Consensus 108 ~~Y~~kFGfpFI 119 (165) T d2o70a1 108 SEYKERFGFPFV 119 (165) T ss_dssp HHHHHHHSSCCC T ss_pred HHHHHHCCCEEE T ss_conf 999997499369 No 19 >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=34.94 E-value=7.2 Score=17.90 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=16.4 Q ss_pred CCEEECCCCHHHHH---HHHHHHHH Q ss_conf 84597436100025---89998674 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKTH 98 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t~ 98 (149) .--.|-+|||.|.. |++|.++. T Consensus 6 kpy~C~~Cgk~F~~~~~L~~H~r~H 30 (33) T d1x6ea1 6 KPYGCVECGKAFSRSSILVQHQRVH 30 (33) T ss_dssp CCEECSSSCCEESSHHHHHHHHHGG T ss_pred CCEECCCCCCEECCHHHHHHHCCCC T ss_conf 8863899988728667867666506 No 20 >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=34.41 E-value=6.4 Score=18.19 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=17.3 Q ss_pred CCEEECCCCHHHHH---HHHHHHHHCC Q ss_conf 84597436100025---8999867439 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKTHHN 100 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t~hg 100 (149) .--.|-+|||.|.. |++|++. |- T Consensus 6 kPy~C~~C~k~F~~~~~L~~H~r~-Ht 31 (35) T d1srka_ 6 RPFVCRICLSAFTTKANCARHLKV-HT 31 (35) T ss_dssp SCEECSSSCCEESSHHHHHHHHGG-GT T ss_pred CCCCCCCCCCCCCCHHHHHHHCCC-CC T ss_conf 460288788965686999987110-47 No 21 >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.68 E-value=6.1 Score=18.35 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=15.9 Q ss_pred CCEEECCCCHHHHH---HHHHHHH Q ss_conf 84597436100025---8999867 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKT 97 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t 97 (149) .--.|-+|||.|+. |++|.++ T Consensus 11 kpy~C~~CgK~F~~~s~L~~H~r~ 34 (38) T d2cota2 11 RRYKCDECGKSFSHSSDLSKHRRT 34 (38) T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTT T ss_pred CCEECCCCCCEEECHHHHHHHCCC T ss_conf 897258878605077897875853 No 22 >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Probab=32.20 E-value=8.5 Score=17.41 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.9 Q ss_pred CCEEECCCCHHHHH---HHHHHHH Q ss_conf 84597436100025---8999867 Q gi|254780783|r 77 GCLYCLEDGMQFKS---LKRHLKT 97 (149) Q Consensus 77 d~iiClecGk~~K~---LkRHL~t 97 (149) .--.|-+|||.|.. |++|.++ T Consensus 10 KPy~C~~C~k~F~~~~~L~~H~r~ 33 (37) T d1p7aa_ 10 KPFQCPDCDRSFSRSDHLALHRKR 33 (37) T ss_dssp SSBCCTTTCCCBSSHHHHHHHHGG T ss_pred CCEEECCCCCEECCHHHHHHHHHC T ss_conf 685759999892488999988760 No 23 >d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]} Probab=32.18 E-value=7.6 Score=17.73 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=10.3 Q ss_pred HHHHHHCCCCCCC Q ss_conf 9999972737988 Q gi|254780783|r 104 DEYRIKWNLASDY 116 (149) Q Consensus 104 ~eYR~kwGLp~dy 116 (149) .+|++|||+|-=. T Consensus 105 ~~Y~~kFGfpFIi 117 (165) T d2o8ia1 105 SAYTEKFGFPFII 117 (165) T ss_dssp HHHHHHHSSCCCC T ss_pred HHHHHHCCCEEEE T ss_conf 9999974992687 No 24 >d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=32.16 E-value=7.7 Score=17.70 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=15.7 Q ss_pred EEECCCCHHH---HHHHHHHHHHCC Q ss_conf 5974361000---258999867439 Q gi|254780783|r 79 LYCLEDGMQF---KSLKRHLKTHHN 100 (149) Q Consensus 79 iiClecGk~~---K~LkRHL~t~hg 100 (149) -||-+||... -+|+.|+++.-| T Consensus 2 YvC~~Cg~~C~KPSvL~KHIRsHT~ 26 (28) T d1bboa1 2 YICEECGIRAKKPSMLKKHIRTHTD 26 (28) T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSS T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 4600217643787999999987248 No 25 >d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=29.90 E-value=8.8 Score=17.33 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=9.9 Q ss_pred HHHHHHCCCCCC Q ss_conf 999997273798 Q gi|254780783|r 104 DEYRIKWNLASD 115 (149) Q Consensus 104 ~eYR~kwGLp~d 115 (149) .+|+.|||+|-= T Consensus 96 ~~Y~~kFGfpFI 107 (155) T d2q37a1 96 VLYKKKFGFIFI 107 (155) T ss_dssp HHHHHHHSSCCC T ss_pred HHHHHHCCCEEE T ss_conf 999998599468 No 26 >d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.53 E-value=9.4 Score=17.15 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=15.8 Q ss_pred EECC--CCHHH---HHHHHHHHHHCC Q ss_conf 9743--61000---258999867439 Q gi|254780783|r 80 YCLE--DGMQF---KSLKRHLKTHHN 100 (149) Q Consensus 80 iCle--cGk~~---K~LkRHL~t~hg 100 (149) +|-. |+|.| .+|++|..+.|| T Consensus 4 ~Ck~~gC~K~YtdPSSLRKH~k~~HG 29 (29) T d2glia5 4 VCKLPGCTKRYTDPSSLRKHVKTVHG 29 (29) T ss_dssp ECCSTTTCCEESSHHHHHHHHHHSCC T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 24369988665788999998785179 No 27 >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Probab=28.15 E-value=11 Score=16.58 Aligned_cols=11 Identities=36% Similarity=0.452 Sum_probs=5.3 Q ss_pred EEECCCCHHHH Q ss_conf 59743610002 Q gi|254780783|r 79 LYCLEDGMQFK 89 (149) Q Consensus 79 iiClecGk~~K 89 (149) -.|-+||+.|. T Consensus 31 y~C~~C~k~F~ 41 (53) T d2csha1 31 YGCGVCGKKFK 41 (53) T ss_dssp EECTTTSCEES T ss_pred CCCCCCCCEEC T ss_conf 70797598925 No 28 >d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]} Probab=27.55 E-value=11 Score=16.66 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=21.8 Q ss_pred CEEECCCCH--HHHHHHHHHHHHCCCCHHH Q ss_conf 459743610--0025899986743999899 Q gi|254780783|r 78 CLYCLEDGM--QFKSLKRHLKTHHNMTPDE 105 (149) Q Consensus 78 ~iiClecGk--~~K~LkRHL~t~hgLtp~e 105 (149) +--|-.||| -.-+|.+||+ .||..-.| T Consensus 146 FYKCe~CgKYvDie~~~~H~k-~HG~~~~e 174 (218) T d2czra1 146 FYKCEECGKYVDIENLEAHLR-EHGIKLHE 174 (218) T ss_dssp EEECTTTCCEEEGGGHHHHHH-TTTCCGGG T ss_pred EEEHHHCCCEECHHHHHHHHH-HCCCCHHH T ss_conf 865254076413899999998-70852544 No 29 >d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=26.69 E-value=17 Score=15.42 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=19.1 Q ss_pred CCCEEECCCCHHHH---HHHHHHHHHCCCC Q ss_conf 88459743610002---5899986743999 Q gi|254780783|r 76 NGCLYCLEDGMQFK---SLKRHLKTHHNMT 102 (149) Q Consensus 76 ~d~iiClecGk~~K---~LkRHL~t~hgLt 102 (149) |-..+|-.|||.|. ++.||--..-|++ T Consensus 2 p~afvcskcgktftrrntm~rha~nc~g~d 31 (37) T d1x6ha1 2 PAAFVCSKCGKTFTRRNTMARHADNCAGPD 31 (37) T ss_dssp CCCEECSSSCCEESCHHHHHHHHHHCCCCC T ss_pred CCEEEECCCCCCHHCCHHHHHHHHHCCCCC T ss_conf 822333003441100037877756067987 No 30 >d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Probab=23.77 E-value=12 Score=16.48 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=20.4 Q ss_pred CCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 8884597436100025899986743999899999727 Q gi|254780783|r 75 ENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWN 111 (149) Q Consensus 75 ~~d~iiClecGk~~K~LkRHL~t~hgLtp~eYR~kwG 111 (149) .+|.|.|+-||+.++-- ..+=+|-+--+||. T Consensus 47 ~~D~v~Cf~C~~~l~~W------e~~DdP~~eH~~~~ 77 (137) T d2qfaa1 47 EPDLAQCFFCFKELEGW------EPDDDPIEEHKKHS 77 (137) T ss_dssp BTTCEEETTTCCEECCC------CTTCCHHHHHHHHC T ss_pred CCCEEEECCCCCCCCCC------CCCCCHHHHHHHHC T ss_conf 99868966557783788------99999999999988 No 31 >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=21.85 E-value=25 Score=14.47 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=24.5 Q ss_pred CEEECCCCHHHHHHHHHHHHHCC----------CCHHHHHHHCCCCCCCCCCCH-HHHHHHH Q ss_conf 45974361000258999867439----------998999997273798832299-9999999 Q gi|254780783|r 78 CLYCLEDGMQFKSLKRHLKTHHN----------MTPDEYRIKWNLASDYPMVSR-EYATTRS 128 (149) Q Consensus 78 ~iiClecGk~~K~LkRHL~t~hg----------Ltp~eYR~kwGLp~dyPlvAp-~Ys~~Rs 128 (149) .+|||.|--|.|.-.-=..+ -| --|++...-+.++..+--+.. ++..-+. T Consensus 442 p~VvLATAHPaKFpdaV~~A-lg~~~~~~~~~~~LP~~L~~L~~~~e~~~~i~n~d~~~vk~ 502 (511) T d1kl7a_ 442 QYISLSTAHPAKFADAVNNA-LSGFSNYSFEKDVLPEELKKLSTLKKKLKFIERADVELVKN 502 (511) T ss_dssp EEEEEECBCGGGGHHHHHHH-HTTCSSCCHHHHTSCHHHHSGGGSCCCCCEECSCCHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHHH T ss_conf 68999576845469999998-57776555565567789998863771002225457999999 No 32 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=21.72 E-value=24 Score=14.54 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=22.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 7436100025899986743999899999 Q gi|254780783|r 81 CLEDGMQFKSLKRHLKTHHNMTPDEYRI 108 (149) Q Consensus 81 ClecGk~~K~LkRHL~t~hgLtp~eYR~ 108 (149) |-.+|-.-..|.|......|+||-+|-. T Consensus 26 A~~~~~s~~~l~r~Fk~~~g~tp~~Yl~ 53 (54) T d1bl0a1 26 SERSGYSKWHLQRMFKKETGHSLGQYIR 53 (54) T ss_dssp HHHSSSCHHHHHHHHHHHHSSCHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHCCCHHHHHH T ss_conf 9998939999999999999919999961 No 33 >d1dtdb_ g.30.1.1 (B:) Carboxypeptidase inhibitor {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]} Probab=20.21 E-value=16 Score=15.74 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=10.6 Q ss_pred CCCCCEEECCCCH Q ss_conf 3888459743610 Q gi|254780783|r 74 IENGCLYCLEDGM 86 (149) Q Consensus 74 i~~d~iiClecGk 86 (149) .+||.+.||+|-. T Consensus 7 yqpdqvccficrg 19 (61) T d1dtdb_ 7 YQPDQVCCFICRG 19 (61) T ss_dssp ECSSCEEEEEEES T ss_pred ECCCCEEEEEECC T ss_conf 2788379999558 Done!