RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780783|ref|YP_003065196.1| transcription regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
(149 letters)
>gnl|CDD|147562 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein.
This family consists of several ROS/MUCR transcriptional
regulator proteins. The ros chromosomal gene is present
in octopine and nopaline strains of Agrobacterium
tumefaciens as well as in Rhizobium meliloti. This gene
encodes a 15.5-kDa protein that specifically represses
the virC and virD operons in the virulence region of the
Ti plasmid and is necessary for succinoglycan
production. Sinorhizobium meliloti can produce two types
of acidic exopolysaccharides, succinoglycan and
galactoglucan, that are interchangeable for infection of
alfalfa nodules. MucR from Sinorhizobium meliloti acts
as a transcriptional repressor that blocks the
expression of the exp genes responsible for
galactoglucan production therefore allowing the
exclusive production of succinoglycan.
Length = 130
Score = 190 bits (486), Expect = 1e-49
Identities = 68/131 (51%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 8 DSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPA 67
+S LE+T DIV+AYVSN+ VP ++ LI VH+AL + + A + E+ PA
Sbjct: 1 MASSDLLELTADIVSAYVSNNSVPAEELPGLIQSVHAALAGLGAPAAAPA-AEEEKPTPA 59
Query: 68 VPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTR 127
VPI+KS+ + CLEDG +FK+LKRHL+THH +TP+EYR KW L +DYPMV+ YA R
Sbjct: 60 VPIKKSVTPDYIICLEDGKKFKTLKRHLRTHHGLTPEEYRAKWGLPADYPMVAPNYAAAR 119
Query: 128 SKLAKNMGLGR 138
S+LAK +GLGR
Sbjct: 120 SELAKKIGLGR 130
>gnl|CDD|34565 COG4957, COG4957, Predicted transcriptional regulator
[Transcription].
Length = 148
Score = 174 bits (442), Expect = 9e-45
Identities = 75/148 (50%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 1 MDDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQ 60
M + S +S++ +E+T DIV+AYVSN+ VP++++ LI VH+AL A V
Sbjct: 1 MMTETSDESNDLLIELTADIVSAYVSNNPVPVSELPDLIAQVHAALAGTGGPAEPP--VP 58
Query: 61 PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
E+ KPAVPI+KS+ + CLEDG +FKSLKRHL TH+ +TPDEYR KW L DYPMV+
Sbjct: 59 VEKQKPAVPIKKSVTPDYIICLEDGKKFKSLKRHLTTHYGLTPDEYRAKWGLPPDYPMVA 118
Query: 121 REYATTRSKLAKNMGLGRGRKKRVLTSK 148
YA RS+LAK MGLGR RK +
Sbjct: 119 PNYAAARSQLAKAMGLGRKRKAGAPAKR 146
>gnl|CDD|38829 KOG3623, KOG3623, KOG3623, Homeobox transcription factor SIP1
[Transcription].
Length = 1007
Score = 28.2 bits (62), Expect = 0.99
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 64 LKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEY 106
P S C YC + SLK H+K H +
Sbjct: 199 AMQGTPDAFSQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNF 241
>gnl|CDD|133109 cd06252, M14_ASTE_ASPA_like_2, A functionally uncharacterized
subgroup of the Succinylglutamate desuccinylase
(ASTE)/aspartoacylase (ASPA) subfamily which is part of
the M14 family of metallocarboxypeptidases. ASTE
catalyzes the fifth and last step in arginine catabolism
by the arginine succinyltransferase pathway, and
aspartoacylase (ASPA, also known as aminoacylase 2, and
ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid
(NAA) into aspartate and acetate. NAA is abundant in the
brain, and hydrolysis of NAA by ASPA may help maintain
white matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the diagnosis
of CD.
Length = 316
Score = 27.2 bits (61), Expect = 1.7
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 20 IVAAYVSNHVVPMADIGSLITDVHS 44
++A Y++ ++P AD + D+HS
Sbjct: 110 MIAHYLTTELLPRAD---YVIDLHS 131
>gnl|CDD|35125 COG5566, COG5566, Uncharacterized conserved protein [Function
unknown].
Length = 137
Score = 26.9 bits (59), Expect = 2.2
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 37 SLITDVHSALQRVVSRAPCQDNVQPERLKPAV-----------------PIRKSIENGCL 79
SL+++VH + A +DN +P LK IR ++ N +
Sbjct: 37 SLLSEVHEVFLAELEDAGIEDNGKPLALKLVFKLMEYGGGRSFYLPKGDSIRATLRNKQI 96
Query: 80 YCLEDGMQFKSLKRHLK 96
+ DG + L + +
Sbjct: 97 FSDFDGSNYVELAKKYR 113
>gnl|CDD|35782 KOG0562, KOG0562, KOG0562, Predicted hydrolase (HIT family)
[General function prediction only].
Length = 184
Score = 26.9 bits (59), Expect = 2.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 78 CLYCLEDGMQFKSLKRHLKTHHNMTPD 104
C C G F LK HL+ ++ D
Sbjct: 156 CWRCQTFGPHFPKLKAHLREEYDQWLD 182
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase
and is thought to bind ATP..
Length = 293
Score = 25.9 bits (58), Expect = 4.0
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 1 MDDDASFDSSERFLEMTVDIVAAYVSNHVV-----PMADIGSL 38
++D A+ L T D + VV P DIG L
Sbjct: 26 LEDAAALLVGGGRLAFTTD-------SFVVSPLFFPGGDIGKL 61
>gnl|CDD|36695 KOG1482, KOG1482, KOG1482, Zn2+ transporter [Inorganic ion
transport and metabolism].
Length = 379
Score = 25.6 bits (56), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 13 FLEMTVDIVAAYVSNHVVPMADIGSLITDVHS 44
+ M ++V Y +N + M D L++DV S
Sbjct: 83 LVFMIGEVVGGYKANSLAIMTDAAHLLSDVAS 114
>gnl|CDD|31690 COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl
hydrolases [Carbohydrate transport and metabolism].
Length = 772
Score = 25.7 bits (56), Expect = 5.4
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 86 MQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLA 131
QF + + H N R W + + REY R +L
Sbjct: 527 YQFGAFSPIFRLHGNDN--IPREPWAFGEETEEIVREYIQLRYRLL 570
>gnl|CDD|37996 KOG2785, KOG2785, KOG2785, C2H2-type Zn-finger protein [General
function prediction only].
Length = 390
Score = 25.4 bits (55), Expect = 6.9
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 73 SIENGCLYCLEDGMQFKSL---------KRHLKTHHNMTPD-EYRIKWNLASDYPMVSRE 122
I CL+C E G F SL K H K ++ E ++ +S YP ++
Sbjct: 215 GIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKLPYDGEERLELAEFYDFSSSYPDIAEN 274
Query: 123 YATTRSKLAKNMGLGRGRKKRVLT 146
++ L G + LT
Sbjct: 275 QDPDSAEEDPTDELEGGDELYELT 298
>gnl|CDD|30697 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and
biogenesis].
Length = 361
Score = 25.3 bits (55), Expect = 6.9
Identities = 17/67 (25%), Positives = 23/67 (34%)
Query: 74 IENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKN 133
G L ED + +R K E +I +L V RE A R + A+
Sbjct: 167 AREGRLEWAEDEFRLLPTRRTYKVLPEDAWREIKIAHSLDPRELAVLRELAAWREREARE 226
Query: 134 MGLGRGR 140
L R
Sbjct: 227 RDLARNF 233
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.132 0.386
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,716,739
Number of extensions: 80620
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 17
Length of query: 149
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,426,972
Effective search space: 283326208
Effective search space used: 283326208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)